ISPa13
- Family IS4
- Group ISH8
Isoform Synonym(s) ISPa24
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Pseudomonas aeruginosa | Providencia stuartii Pseudomonas aeruginosa RNL-1 |
DNA section
IS Length : 1387 bp
Ends
IR Length : 11
IRL : TCATAGGTATGATCTTTAGGAGTTGAAGAGGTGCTTCATTCGTGATCTAA
IRR : TCATACGTATGACCTTAACGACCTAACCCAATGATTTATTTGTGTTATTA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|
DNA sequence
TCATAGGTATGATCTTTAGGAGTTGAAGAGGTGCTTCATTCGTGATCTAATTGATTTACCAGAAAAAAAAGATCACCTTTGCAGGAAAAACGAATGAAGC
AACAACAAGATACCCGATTTTCGAGCGCTTTTGAACGATTTTTTTCAGCAGCAGAGCTTGATGCGCTTGGCAAGCAATCAGGCTTTATGAAGCGGCGGCG
GCAGGTGACGCCACAGAAGTTTTGCATGGCGCTGGTCAGTGCGCTGGGTGCAGGAACAACGAATTCGATTGCCGATGTGCACCGGCAATTTAACCATATG
CACTCAACGGACATAAAGCTTAAACCCTTTCATAAACAGTTGGTTAAAATGGCTGCTCCTGAATTTATGCGTGAAGTGTTTGAAAAGGCGCTGGCTCTGC
ATCTCCCTGATATGTTTGCTATCAGGAATAAATATCAGGACATGTTCAAGCGCATTATTTTACAAGATGGCACCAGTTTCGCTGTACATGACGACTTAAT
GTTCTATTTTCCAGGACGTTTTAATGAAAATAGTCCGGCAGCGGTTGAGTTACATGTCACTTATGACGTGTTTAAGGGGCAACCTGACGGTGTTAGTCTG
ACTGAGGACACGGCACCCGAGCGGGACTATTTGCCTTCACCCGCCTCTTTATCAGGCTGCTTATTTATGGCAGATGCAGGTTATTTTTCAAAAGCTTATA
TACAACAGCTTCAAGAAGCCTGCGCGTATTTTATTATGCGGATGTGTAACCGTGTTAATCCAATGGCGGTTTGTACTAAGACTCAGCAGATGAAGCCGCT
GAAAACATGGTTAAAAGAATTACCCAATGCAGGTGTATTGGATTTAGATGTGCAGTGGCCGAATGGCCCGGTTTATCGTTGCGTTGCATTTGCAGCATTA
GATCACAAAAAACGTCATGTATTGGTCTGCACTAACCTTGACCGTGAGCAGTTTCCTCCAGCTGTTGTGGGTGATTTTTATCGTGTTCGCTGGCAAATAG
AATTATTATTCAAAGAGTGGAAGTCGATGAATAATTTAAATAAATTCGATACAGGTCATGCCACAATCGTTGAGACATTAATTTGGGGTAGCTTGCTGGC
AGCAACCTTAAAACGCTGGCTAATCAACGCGGCACAAAAGAAGTATAACCGGGTGTTGTCGCTTTTTACCGGAGCAAAAACTGCCCATATGTGGTGGATA
CCATTTTGCTTTGATATAGCCATGAGTCGTGGTACGGATTTAGCAAAAGCCATGAATAACGCGCTGGCATTTTTAGCGCAACATTGCCAACGGCAAAATG
TTAAACGAGACCAAATAAGTGGCGTATATAAGCTGCTTAATAACACAAATAAATCATTGGGTTAGGTCGTTAAGGTCATACGTATGA
AACAACAAGATACCCGATTTTCGAGCGCTTTTGAACGATTTTTTTCAGCAGCAGAGCTTGATGCGCTTGGCAAGCAATCAGGCTTTATGAAGCGGCGGCG
GCAGGTGACGCCACAGAAGTTTTGCATGGCGCTGGTCAGTGCGCTGGGTGCAGGAACAACGAATTCGATTGCCGATGTGCACCGGCAATTTAACCATATG
CACTCAACGGACATAAAGCTTAAACCCTTTCATAAACAGTTGGTTAAAATGGCTGCTCCTGAATTTATGCGTGAAGTGTTTGAAAAGGCGCTGGCTCTGC
ATCTCCCTGATATGTTTGCTATCAGGAATAAATATCAGGACATGTTCAAGCGCATTATTTTACAAGATGGCACCAGTTTCGCTGTACATGACGACTTAAT
GTTCTATTTTCCAGGACGTTTTAATGAAAATAGTCCGGCAGCGGTTGAGTTACATGTCACTTATGACGTGTTTAAGGGGCAACCTGACGGTGTTAGTCTG
ACTGAGGACACGGCACCCGAGCGGGACTATTTGCCTTCACCCGCCTCTTTATCAGGCTGCTTATTTATGGCAGATGCAGGTTATTTTTCAAAAGCTTATA
TACAACAGCTTCAAGAAGCCTGCGCGTATTTTATTATGCGGATGTGTAACCGTGTTAATCCAATGGCGGTTTGTACTAAGACTCAGCAGATGAAGCCGCT
GAAAACATGGTTAAAAGAATTACCCAATGCAGGTGTATTGGATTTAGATGTGCAGTGGCCGAATGGCCCGGTTTATCGTTGCGTTGCATTTGCAGCATTA
GATCACAAAAAACGTCATGTATTGGTCTGCACTAACCTTGACCGTGAGCAGTTTCCTCCAGCTGTTGTGGGTGATTTTTATCGTGTTCGCTGGCAAATAG
AATTATTATTCAAAGAGTGGAAGTCGATGAATAATTTAAATAAATTCGATACAGGTCATGCCACAATCGTTGAGACATTAATTTGGGGTAGCTTGCTGGC
AGCAACCTTAAAACGCTGGCTAATCAACGCGGCACAAAAGAAGTATAACCGGGTGTTGTCGCTTTTTACCGGAGCAAAAACTGCCCATATGTGGTGGATA
CCATTTTGCTTTGATATAGCCATGAGTCGTGGTACGGATTTAGCAAAAGCCATGAATAACGCGCTGGCATTTTTAGCGCAACATTGCCAACGGCAAAATG
TTAAACGAGACCAAATAAGTGGCGTATATAAGCTGCTTAATAACACAAATAAATCATTGGGTTAGGTCGTTAAGGTCATACGTATGA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1271 bp | 424 aa | 94 | 1364 | + | No |
Chemistry : DDE
ORF sequence :
MKQQQDTRFSSAFERFFSAAELDALGKQSGFMKRRRQVTPQKFCMALVSALGAGTTNSIADVHRQFNHMHSTDIKLKPFHKQLVKMAAPEFMREVFEKAL
ALHLPDMFAIRNKYQDMFKRIILQDGTSFAVHDDLMFYFPGRFNENSPAAVELHVTYDVFKGQPDGVSLTEDTAPERDYLPSPASLSGCLFMADAGYFSK
AYIQQLQEACAYFIMRMCNRVNPMAVCTKTQQMKPLKTWLKELPNAGVLDLDVQWPNGPVYRCVAFAALDHKKRHVLVCTNLDREQFPPAVVGDFYRVRW
QIELLFKEWKSMNNLNKFDTGHATIVETLIWGSLLAATLKRWLINAAQKKYNRVLSLFTGAKTAHMWWIPFCFDIAMSRGTDLAKAMNNALAFLAQHCQR
QNVKRDQISGVYKLLNNTNKSLG
ALHLPDMFAIRNKYQDMFKRIILQDGTSFAVHDDLMFYFPGRFNENSPAAVELHVTYDVFKGQPDGVSLTEDTAPERDYLPSPASLSGCLFMADAGYFSK
AYIQQLQEACAYFIMRMCNRVNPMAVCTKTQQMKPLKTWLKELPNAGVLDLDVQWPNGPVYRCVAFAALDHKKRHVLVCTNLDREQFPPAVVGDFYRVRW
QIELLFKEWKSMNNLNKFDTGHATIVETLIWGSLLAATLKRWLINAAQKKYNRVLSLFTGAKTAHMWWIPFCFDIAMSRGTDLAKAMNNALAFLAQHCQR
QNVKRDQISGVYKLLNNTNKSLG
Blast result :
Comments
ISPa13 is 63% aa similar to ISPa12. They have the same IRs except for one mismatch in IRL of ISPa13. ISPa13 and ISPa12 flank a beta-lactamase gene in direct orientation. This structure is probably a composite tranposon since there are no DRs flanking the individual ISs but the entire structure is flanked by 8 bp ( GGCGTAAA ). ISPa12 and ISPa13 are clarely related.
ISPa13 insertion site : TATTTACGCC(ISPa13)AGTGCCTCTA.
ISPa13 insertion site : TATTTACGCC(ISPa13)AGTGCCTCTA.
References