ISPrst1
- Family IS4
- Group IS50
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Providencia stuartii | Providencia stuartii BEN |
DNA section
IS Length : 1512 bp
Ends
IR Length : 18/21
IRL : CTGTCTCTTATACACAAATCATTATTTCTGGAACTTTAACGACATTCATA
IRR : CTGTCTCTTGATCACAAATCAAAAATGAAGTCTTGGGTTATTCGATATCC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ACAAAAGGGG | AAGCCACTG | AACCTAATAA | 9 |
DNA sequence
CTGTCTCTTATACACAAATCATTATTTCTGGAACTTTAACGACATTCATAGATCAGATCTTCCATTGATGAGTCTGAATTAAGGAATAAACATGATTGTC
AAAGCTGCTGAGTGGGCACAGAATAATTTTGGTAATGCTGAGCTAGGTGATAAAAGACGGACAAAACGACTCGTTACTTTAGTTACTGACTTAGTCAGTA
ACATTGGTATGTCGGTTGTAAAATCATCACAAACATCGGACAAAATTGAGGCTGCTTATCGCTTTATTCGAAATGAAAAAATTAAGGCTCAAGATATTGA
AACGTCAGCATTTAACGCTACAGCAGAGCTCGTTAACAATTATGATTTATTGCTTGCTTTAGAAGATACAACATCCCTTAATTTCAGTTATAAATCCGTC
AAGCCTGAACTTGGCCCTTTAGGGAATAGTACAAAAGCTAGGGGGATGATGGCTCATTCTGTATTGTTATTTGCACCAAATGAACAAAATGTTGTGGGCC
TTATCGAACAACAGCGTTGGTGCCGAAGCCTCTCCTCTCATGGTAGAGGAAGTAAACATTTAGAATATAAATATGAAGATAAAGAAAGCTTTAAATGGCA
AAGAGCTTCAACTCATGTTGCCAAGAGACTTAAATCGAATATGAGTAAAGTTATATCTGTCTGCGATCGTGAGGCAGATATTTATGAATATCTTCGATAT
AAAACTCAAAATAACCATCGTTTTGTTGTTCGTTCGATGCAAAGTCGGAGACTCACAGAGGAAAACAATAAACTCTATTCTTTTTCAGAAAATTTAGTCA
GTGTTGCTCAAAGAACCATTTGCATATCTCAAAGAGGCGCAACAAAAACCTCAGCAGCTAGGAAAAAGAGATTAGTAAACTGCGATATCAAATACTCACC
TGTTACATTAAAAGTTCCGGGAAATAAGCGCGGTAATCTTGAAGATATAAGTCTTTATTATGTTGGCTGCCATGAGAACTCAACTGGCTCTAAAGAGCCA
TTGAGATGGCATTTATTGACTTCTGAAAAAATCAATAATGCTGATGACGCAAAGCGAATCATAGAGTTCTATGAGAAAAGGTGGCTAATTGAGGACTACC
ATAAAGCTTGGAAGTCTGGGGGGACAAAAGTCGAATCATTACGCATGCAGACAAAAAATAGCCTTGAAAAAATGACTGTCATATTGTCATTTATTGCTAT
TAGGATTCAGCAACTTAGGTATGTAGGGTTAAATAAAGATAAAGCTAAAAATACCAGTTGTGAAACACTATTGACGCCTTTGGAGTGGAAGTTACTTTGG
ATAAAAGTTGAAGGTGTACAACCTCCTAAATTAACGCCCAATATTCATTGGGCTTACATTAGCCTAGGTAAATTAGCAGGTTGGAACAATAGTAAACTAA
CAGGGAGAATAAGTTGGATCACCCTATGGGAAGGATGGTTTAAGTTGCAGACTTTGGTTGAAGGATATCGAATAACCCAAGACTTCATTTTTGATTTGTG
ATCAAGAGACAG
AAAGCTGCTGAGTGGGCACAGAATAATTTTGGTAATGCTGAGCTAGGTGATAAAAGACGGACAAAACGACTCGTTACTTTAGTTACTGACTTAGTCAGTA
ACATTGGTATGTCGGTTGTAAAATCATCACAAACATCGGACAAAATTGAGGCTGCTTATCGCTTTATTCGAAATGAAAAAATTAAGGCTCAAGATATTGA
AACGTCAGCATTTAACGCTACAGCAGAGCTCGTTAACAATTATGATTTATTGCTTGCTTTAGAAGATACAACATCCCTTAATTTCAGTTATAAATCCGTC
AAGCCTGAACTTGGCCCTTTAGGGAATAGTACAAAAGCTAGGGGGATGATGGCTCATTCTGTATTGTTATTTGCACCAAATGAACAAAATGTTGTGGGCC
TTATCGAACAACAGCGTTGGTGCCGAAGCCTCTCCTCTCATGGTAGAGGAAGTAAACATTTAGAATATAAATATGAAGATAAAGAAAGCTTTAAATGGCA
AAGAGCTTCAACTCATGTTGCCAAGAGACTTAAATCGAATATGAGTAAAGTTATATCTGTCTGCGATCGTGAGGCAGATATTTATGAATATCTTCGATAT
AAAACTCAAAATAACCATCGTTTTGTTGTTCGTTCGATGCAAAGTCGGAGACTCACAGAGGAAAACAATAAACTCTATTCTTTTTCAGAAAATTTAGTCA
GTGTTGCTCAAAGAACCATTTGCATATCTCAAAGAGGCGCAACAAAAACCTCAGCAGCTAGGAAAAAGAGATTAGTAAACTGCGATATCAAATACTCACC
TGTTACATTAAAAGTTCCGGGAAATAAGCGCGGTAATCTTGAAGATATAAGTCTTTATTATGTTGGCTGCCATGAGAACTCAACTGGCTCTAAAGAGCCA
TTGAGATGGCATTTATTGACTTCTGAAAAAATCAATAATGCTGATGACGCAAAGCGAATCATAGAGTTCTATGAGAAAAGGTGGCTAATTGAGGACTACC
ATAAAGCTTGGAAGTCTGGGGGGACAAAAGTCGAATCATTACGCATGCAGACAAAAAATAGCCTTGAAAAAATGACTGTCATATTGTCATTTATTGCTAT
TAGGATTCAGCAACTTAGGTATGTAGGGTTAAATAAAGATAAAGCTAAAAATACCAGTTGTGAAACACTATTGACGCCTTTGGAGTGGAAGTTACTTTGG
ATAAAAGTTGAAGGTGTACAACCTCCTAAATTAACGCCCAATATTCATTGGGCTTACATTAGCCTAGGTAAATTAGCAGGTTGGAACAATAGTAAACTAA
CAGGGAGAATAAGTTGGATCACCCTATGGGAAGGATGGTTTAAGTTGCAGACTTTGGTTGAAGGATATCGAATAACCCAAGACTTCATTTTTGATTTGTG
ATCAAGAGACAG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1410 bp | 469 aa | 92 | 1501 | + | No |
Chemistry : DDE
ORF sequence :
MIVKAAEWAQNNFGNAELGDKRRTKRLVTLVTDLVSNIGMSVVKSSQTSDKIEAAYRFIRNEKIKAQDIETSAFNATAELVNNYDLLLALEDTTSLNFSY
KSVKPELGPLGNSTKARGMMAHSVLLFAPNEQNVVGLIEQQRWCRSLSSHGRGSKHLEYKYEDKESFKWQRASTHVAKRLKSNMSKVISVCDREADIYEY
LRYKTQNNHRFVVRSMQSRRLTEENNKLYSFSENLVSVAQRTICISQRGATKTSAARKKRLVNCDIKYSPVTLKVPGNKRGNLEDISLYYVGCHENSTGS
KEPLRWHLLTSEKINNADDAKRIIEFYEKRWLIEDYHKAWKSGGTKVESLRMQTKNSLEKMTVILSFIAIRIQQLRYVGLNKDKAKNTSCETLLTPLEWK
LLWIKVEGVQPPKLTPNIHWAYISLGKLAGWNNSKLTGRISWITLWEGWFKLQTLVEGYRITQDFIFDL
KSVKPELGPLGNSTKARGMMAHSVLLFAPNEQNVVGLIEQQRWCRSLSSHGRGSKHLEYKYEDKESFKWQRASTHVAKRLKSNMSKVISVCDREADIYEY
LRYKTQNNHRFVVRSMQSRRLTEENNKLYSFSENLVSVAQRTICISQRGATKTSAARKKRLVNCDIKYSPVTLKVPGNKRGNLEDISLYYVGCHENSTGS
KEPLRWHLLTSEKINNADDAKRIIEFYEKRWLIEDYHKAWKSGGTKVESLRMQTKNSLEKMTVILSFIAIRIQQLRYVGLNKDKAKNTSCETLLTPLEWK
LLWIKVEGVQPPKLTPNIHWAYISLGKLAGWNNSKLTGRISWITLWEGWFKLQTLVEGYRITQDFIFDL
Blast result :
Comments
ISPrst1 is 54% aa similar to IS50R.
There is only one copy of this IS in the genome.
There is only one copy of this IS in the genome.
References
1] Laurent Poirel. (2004) Direct submission