ISPrst1

  • Family IS4
  • Group IS50
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Providencia stuartii
Providencia stuartii BEN
DNA section
IS Length : 1512 bp

Ends


IR Length : 18/21

IRL : CTGTCTCTTATACACAAATCATTATTTCTGGAACTTTAACGACATTCATA
IRR : CTGTCTCTTGATCACAAATCAAAAATGAAGTCTTGGGTTATTCGATATCC

Insertion site


Left flankDirect repeatRight flankDR Length
ACAAAAGGGGAAGCCACTGAACCTAATAA9

DNA sequence

CTGTCTCTTATACACAAATCATTATTTCTGGAACTTTAACGACATTCATAGATCAGATCTTCCATTGATGAGTCTGAATTAAGGAATAAACATGATTGTC
AAAGCTGCTGAGTGGGCACAGAATAATTTTGGTAATGCTGAGCTAGGTGATAAAAGACGGACAAAACGACTCGTTACTTTAGTTACTGACTTAGTCAGTA
ACATTGGTATGTCGGTTGTAAAATCATCACAAACATCGGACAAAATTGAGGCTGCTTATCGCTTTATTCGAAATGAAAAAATTAAGGCTCAAGATATTGA
AACGTCAGCATTTAACGCTACAGCAGAGCTCGTTAACAATTATGATTTATTGCTTGCTTTAGAAGATACAACATCCCTTAATTTCAGTTATAAATCCGTC
AAGCCTGAACTTGGCCCTTTAGGGAATAGTACAAAAGCTAGGGGGATGATGGCTCATTCTGTATTGTTATTTGCACCAAATGAACAAAATGTTGTGGGCC
TTATCGAACAACAGCGTTGGTGCCGAAGCCTCTCCTCTCATGGTAGAGGAAGTAAACATTTAGAATATAAATATGAAGATAAAGAAAGCTTTAAATGGCA
AAGAGCTTCAACTCATGTTGCCAAGAGACTTAAATCGAATATGAGTAAAGTTATATCTGTCTGCGATCGTGAGGCAGATATTTATGAATATCTTCGATAT
AAAACTCAAAATAACCATCGTTTTGTTGTTCGTTCGATGCAAAGTCGGAGACTCACAGAGGAAAACAATAAACTCTATTCTTTTTCAGAAAATTTAGTCA
GTGTTGCTCAAAGAACCATTTGCATATCTCAAAGAGGCGCAACAAAAACCTCAGCAGCTAGGAAAAAGAGATTAGTAAACTGCGATATCAAATACTCACC
TGTTACATTAAAAGTTCCGGGAAATAAGCGCGGTAATCTTGAAGATATAAGTCTTTATTATGTTGGCTGCCATGAGAACTCAACTGGCTCTAAAGAGCCA
TTGAGATGGCATTTATTGACTTCTGAAAAAATCAATAATGCTGATGACGCAAAGCGAATCATAGAGTTCTATGAGAAAAGGTGGCTAATTGAGGACTACC
ATAAAGCTTGGAAGTCTGGGGGGACAAAAGTCGAATCATTACGCATGCAGACAAAAAATAGCCTTGAAAAAATGACTGTCATATTGTCATTTATTGCTAT
TAGGATTCAGCAACTTAGGTATGTAGGGTTAAATAAAGATAAAGCTAAAAATACCAGTTGTGAAACACTATTGACGCCTTTGGAGTGGAAGTTACTTTGG
ATAAAAGTTGAAGGTGTACAACCTCCTAAATTAACGCCCAATATTCATTGGGCTTACATTAGCCTAGGTAAATTAGCAGGTTGGAACAATAGTAAACTAA
CAGGGAGAATAAGTTGGATCACCCTATGGGAAGGATGGTTTAAGTTGCAGACTTTGGTTGAAGGATATCGAATAACCCAAGACTTCATTTTTGATTTGTG
ATCAAGAGACAG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1410 bp469 aa921501+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MIVKAAEWAQNNFGNAELGDKRRTKRLVTLVTDLVSNIGMSVVKSSQTSDKIEAAYRFIRNEKIKAQDIETSAFNATAELVNNYDLLLALEDTTSLNFSY
KSVKPELGPLGNSTKARGMMAHSVLLFAPNEQNVVGLIEQQRWCRSLSSHGRGSKHLEYKYEDKESFKWQRASTHVAKRLKSNMSKVISVCDREADIYEY
LRYKTQNNHRFVVRSMQSRRLTEENNKLYSFSENLVSVAQRTICISQRGATKTSAARKKRLVNCDIKYSPVTLKVPGNKRGNLEDISLYYVGCHENSTGS
KEPLRWHLLTSEKINNADDAKRIIEFYEKRWLIEDYHKAWKSGGTKVESLRMQTKNSLEKMTVILSFIAIRIQQLRYVGLNKDKAKNTSCETLLTPLEWK
LLWIKVEGVQPPKLTPNIHWAYISLGKLAGWNNSKLTGRISWITLWEGWFKLQTLVEGYRITQDFIFDL

 

Blast result :
Comments
ISPrst1 is 54% aa similar to IS50R.
There is only one copy of this IS in the genome.
References
1] Laurent Poirel. (2004) Direct submission