ISPpa3
- Family IS5
- Group IS903
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AY177681 | Y | Paracoccus pantotrophus | Paracoccus pantotrophus DSM 11072 Paracoccus bengalensis DSM 17099 |
DNA section
IS Length : 1054 bp
Ends
IR Length : 19/21
IRL : GGCGTTGTTGCAGAACTCCGTTTTCTGAGGGATTCACACTGCGAATCCAG
IRR : GGCGTTGTTGCAGAAGTCAGTGTGTTATCGCAGTTTTCCCTTTCCGCGTT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AAACAGGGTA | CTCATACTC | ATACTCACTT | 9 |
AAATGGTACC | TGTTCACTG | ACTCCCGCGG | 9 |
DNA sequence
GGCGTTGTTGCAGAACTCCGTTTTCTGAGGGATTCACACTGCGAATCCAGTGGGCTAAGGGGCGAGTATGAGCAAGCCTGAGCCGACCCGCTACCGCACG
ATGAACTGGAAGTCCTACAACGATGCCTTGAAGCAGCGCGGGTCCCTTCTGATCTGGCTGGACAAGGACATGGTTTGGCGCGCACCCAAATCCGGATGCA
ATGGTCGGCCGCCGGTCTTCTCTGATGCCGCGATCCAGTTCTGCTTGATGGTGAAGGTTCTGTTCGGCCTGCCTTTGCGGCAAACGACAGGGATGGTGGC
GAGCATCCTTTCGATGGCCGGGCTCGACTGGCGGGTGCCCGATTTCTCGACCCTGAGCCGCAGGCAGAAGCGCATCACGGTTCAGATCACGAGCCGCCGT
GCGCCGGGGCCGCTGAACCTGCTGGTGGACAGCACCGGGATCAAGTTTCTTGGTGATGGGGAATGGCTTGCCCGCAAGCATGGCCCGCATCGCCGACGCC
AATATCGTAAGGTTCATCTGGCGATGGACACGGCTACAGGTGACATCCGCGCCGTCGAATTCACCTCAAGCCGTGAAGGCGACAGCCCTGTTCTGCCCGA
CCTGCTCAACCAGATCCCAGAGGATGAACAGATCGGCACCGTCACCGGCGACGGTGCCTTTGACACCCGACGCTGCCACACCGCGATCCTGGATCGAGGC
GGCACCGCCATCATCCCGATCCGGAGGAATGGCCGTCTCTGGAAGGAGGATTGCCCCGCAGCCAGGGCGCGCAACGAGATCCTCCGGGCAACCCAGCGCT
TGGGCAGGGCCATATGGAAGCGCTGGTCAGGTTATCACGTCCGAAGCAGGATCGAGGCAAGGATGCGCTGCCTCAAGGCCTTCGGTGAACGCATCTCATC
ACGAGACCCGGACCGCCAGACCGCCGAAATCCATATCCGCATCGCCCTCATGAACCGCTTCAATGCCCTCGGATCCGCCGAGATCAAACGCGTGGCATGA
ACTCAACGCGGAAAGGGAAAACTGCGATAACACACTGACTTCTGCAACAACGCC
ATGAACTGGAAGTCCTACAACGATGCCTTGAAGCAGCGCGGGTCCCTTCTGATCTGGCTGGACAAGGACATGGTTTGGCGCGCACCCAAATCCGGATGCA
ATGGTCGGCCGCCGGTCTTCTCTGATGCCGCGATCCAGTTCTGCTTGATGGTGAAGGTTCTGTTCGGCCTGCCTTTGCGGCAAACGACAGGGATGGTGGC
GAGCATCCTTTCGATGGCCGGGCTCGACTGGCGGGTGCCCGATTTCTCGACCCTGAGCCGCAGGCAGAAGCGCATCACGGTTCAGATCACGAGCCGCCGT
GCGCCGGGGCCGCTGAACCTGCTGGTGGACAGCACCGGGATCAAGTTTCTTGGTGATGGGGAATGGCTTGCCCGCAAGCATGGCCCGCATCGCCGACGCC
AATATCGTAAGGTTCATCTGGCGATGGACACGGCTACAGGTGACATCCGCGCCGTCGAATTCACCTCAAGCCGTGAAGGCGACAGCCCTGTTCTGCCCGA
CCTGCTCAACCAGATCCCAGAGGATGAACAGATCGGCACCGTCACCGGCGACGGTGCCTTTGACACCCGACGCTGCCACACCGCGATCCTGGATCGAGGC
GGCACCGCCATCATCCCGATCCGGAGGAATGGCCGTCTCTGGAAGGAGGATTGCCCCGCAGCCAGGGCGCGCAACGAGATCCTCCGGGCAACCCAGCGCT
TGGGCAGGGCCATATGGAAGCGCTGGTCAGGTTATCACGTCCGAAGCAGGATCGAGGCAAGGATGCGCTGCCTCAAGGCCTTCGGTGAACGCATCTCATC
ACGAGACCCGGACCGCCAGACCGCCGAAATCCATATCCGCATCGCCCTCATGAACCGCTTCAATGCCCTCGGATCCGCCGAGATCAAACGCGTGGCATGA
ACTCAACGCGGAAAGGGAAAACTGCGATAACACACTGACTTCTGCAACAACGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
933 bp | 310 aa | 68 | 1000 | + | No |
Chemistry : DDE
ORF sequence :
MSKPEPTRYRTMNWKSYNDALKQRGSLLIWLDKDMVWRAPKSGCNGRPPVFSDAAIQFCLMVKVLFGLPLRQTTGMVASILSMAGLDWRVPDFSTLSRRQ
KRITVQITSRRAPGPLNLLVDSTGIKFLGDGEWLARKHGPHRRRQYRKVHLAMDTATGDIRAVEFTSSREGDSPVLPDLLNQIPEDEQIGTVTGDGAFDT
RRCHTAILDRGGTAIIPIRRNGRLWKEDCPAARARNEILRATQRLGRAIWKRWSGYHVRSRIEARMRCLKAFGERISSRDPDRQTAEIHIRIALMNRFNA
LGSAEIKRVA
KRITVQITSRRAPGPLNLLVDSTGIKFLGDGEWLARKHGPHRRRQYRKVHLAMDTATGDIRAVEFTSSREGDSPVLPDLLNQIPEDEQIGTVTGDGAFDT
RRCHTAILDRGGTAIIPIRRNGRLWKEDCPAARARNEILRATQRLGRAIWKRWSGYHVRSRIEARMRCLKAFGERISSRDPDRQTAEIHIRIALMNRFNA
LGSAEIKRVA
Blast result :
Comments
References
1] Bartosik,D., Sochacka,M. and Baj,J. (2003) J. Bacteriol. 185 (13), 3753-3763
2] Bartosik,D.(2003) Direct submission
2] Bartosik,D.(2003) Direct submission