ISPlu1
- Family IS30
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_005126 | ND | Photorhabdus luminescens | Photorhabdus luminescens subsp. laumondii TTO1 |
DNA section
IS Length : 1077 bp
Ends
IR Length : 18/21
IRL : GGATTCGACTAATAAGTGCAATTTTTCAGAAGGGCGGTCAGTTGCTATAG
IRR : GGATTCACATAATAAGTGCAACATCGTTAATCTGGAAGTAAACATGTTCG
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|
DNA sequence
GGATTCGACTAATAAGTGCAATTTTTCAGAAGGGCGGTCAGTTGCTATAGTAGGCATCTTTCTCGCCAAAGGAAAATGCACTATGGCCTATACACAACTG
ACCGAAACAGAAAGATACCAGATTTCCAGTTTAAGAGAAGCGGGTTTTTCACAGCTTTTTATTGCGAAGTCACTTAAGCGAAGCCCATCGACCATCAGCA
GAGAATTGAAGAGAAATCAAGAAGTCCAGACATACTGCCCTGAACAGGCTCATTTGAAGGTATTGGCGCGTCGTCATTTTGCTAAAAAGGCCGTGAAAAT
AACGCCGGAAGTAAAAAGATGGATAAAACGGTTAATTTGGAAAGATTTAAGCCCTGAACAGGTGGCTGATTATTTGAAGCAACATAAAGGGATATCTTTG
CATCATGAGACGATTTATAGACTGATTTATCAAGATAAAAGAGAGGGGGGTGATTTATGGCAACATCTGCGAATAGCCAGAAAACCCTATCGCAAACGCT
ATGGTCGCTATGAAAGAAGAGGTAAAATTAAAAATCGGGTCAGTATTGATGAACGCCCGGAAATTGTTGATAAAAAAGAACGTATTGGGGACTGGGAAGG
AGATACGATAATAGGGAAAGATAAAAAAAGTGTCTTATTAACATTGGTTGACCGCAAGACGCTGTATACAATTATCGTTAAACTTGATAGCAAGCAGGCA
TCAGAAGTCGCGAAAGCAGCAGTGAAAGTATTATACCCGTTAAAACAAAAGGTTAAGACCATCACGTTCGATAACGGTTTGGAGTTCGCAGATCATGAAA
TCATCGGTGAAGAATTAGAAACCCAAATTTACTTTGCTCACCCTTATTCGCCTTGGGAAAGAGGGATCAATGAGAATATCAATGGGTTAATCAGACAATA
CTTTCCAAAGGGAACCAATTTTAATGAAATCTCTGATCAGGAAATAAATTTTGTGGTAAACCGATTAAATAATCGTCCTCGAAAAACACGGGGTGGGAAA
ACACCGAATGAATTATTTAAAGGAATACGAACATGTTTACTTCCAGATTAACGATGTTGCACTTATTATGTGAATCC
ACCGAAACAGAAAGATACCAGATTTCCAGTTTAAGAGAAGCGGGTTTTTCACAGCTTTTTATTGCGAAGTCACTTAAGCGAAGCCCATCGACCATCAGCA
GAGAATTGAAGAGAAATCAAGAAGTCCAGACATACTGCCCTGAACAGGCTCATTTGAAGGTATTGGCGCGTCGTCATTTTGCTAAAAAGGCCGTGAAAAT
AACGCCGGAAGTAAAAAGATGGATAAAACGGTTAATTTGGAAAGATTTAAGCCCTGAACAGGTGGCTGATTATTTGAAGCAACATAAAGGGATATCTTTG
CATCATGAGACGATTTATAGACTGATTTATCAAGATAAAAGAGAGGGGGGTGATTTATGGCAACATCTGCGAATAGCCAGAAAACCCTATCGCAAACGCT
ATGGTCGCTATGAAAGAAGAGGTAAAATTAAAAATCGGGTCAGTATTGATGAACGCCCGGAAATTGTTGATAAAAAAGAACGTATTGGGGACTGGGAAGG
AGATACGATAATAGGGAAAGATAAAAAAAGTGTCTTATTAACATTGGTTGACCGCAAGACGCTGTATACAATTATCGTTAAACTTGATAGCAAGCAGGCA
TCAGAAGTCGCGAAAGCAGCAGTGAAAGTATTATACCCGTTAAAACAAAAGGTTAAGACCATCACGTTCGATAACGGTTTGGAGTTCGCAGATCATGAAA
TCATCGGTGAAGAATTAGAAACCCAAATTTACTTTGCTCACCCTTATTCGCCTTGGGAAAGAGGGATCAATGAGAATATCAATGGGTTAATCAGACAATA
CTTTCCAAAGGGAACCAATTTTAATGAAATCTCTGATCAGGAAATAAATTTTGTGGTAAACCGATTAAATAATCGTCCTCGAAAAACACGGGGTGGGAAA
ACACCGAATGAATTATTTAAAGGAATACGAACATGTTTACTTCCAGATTAACGATGTTGCACTTATTATGTGAATCC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 969 bp | 322 aa | 83 | 1051 | + | No |
Chemistry : DDE
ORF sequence :
MAYTQLTETERYQISSLREAGFSQLFIAKSLKRSPSTISRELKRNQEVQTYCPEQAHLKVLARRHFAKKAVKITPEVKRWIKRLIWKDLSPEQVADYLKQ
HKGISLHHETIYRLIYQDKREGGDLWQHLRIARKPYRKRYGRYERRGKIKNRVSIDERPEIVDKKERIGDWEGDTIIGKDKKSVLLTLVDRKTLYTIIVK
LDSKQASEVAKAAVKVLYPLKQKVKTITFDNGLEFADHEIIGEELETQIYFAHPYSPWERGINENINGLIRQYFPKGTNFNEISDQEINFVVNRLNNRPR
KTRGGKTPNELFKGIRTCLLPD
HKGISLHHETIYRLIYQDKREGGDLWQHLRIARKPYRKRYGRYERRGKIKNRVSIDERPEIVDKKERIGDWEGDTIIGKDKKSVLLTLVDRKTLYTIIVK
LDSKQASEVAKAAVKVLYPLKQKVKTITFDNGLEFADHEIIGEELETQIYFAHPYSPWERGINENINGLIRQYFPKGTNFNEISDQEINFVVNRLNNRPR
KTRGGKTPNELFKGIRTCLLPD
Blast result :
Comments
There are 6 copies and 14 partial copies of this IS.ISPlu1 is 67% aa similar to IS1655
References
1] Duchaud,E., Rusniok,C., Frangeul,L., Buchrieser,C., Taourit,S., Bocs,S., Boursaux-Eude,C., Chandler,M., Dassa,E., Derose,R.,Derzelle,S., Freyssinet,G., Gaudriault,S., Givaudan,A., Glaser,P.,Medigue,C., Lanois,A., Powell,K., Siguier,P., Wingate,V.,Zouine,M., Boemare,N., Danchin,A. and Kunst,(2003) F.Nat. Biotechnol.