ISBthe1
- Family IS4
- Group IS4Sa
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_004663 | ND | Bacteroides thetaiotaomicron | Bacteroides thetaiotaomicron VPI-5482 |
DNA section
IS Length : 1317 bp
Ends
IR Length : 20
IRL : CATTGCTGTCCCATTAAAATCTAAAAGAGTTCTTTGAAATATTTGAAATT
IRR : CATTAGTGTCCCATTAAAATTGGGACGAATTAAAAATTAAATAAACTTGG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|
DNA sequence
CATTGCTGTCCCATTAAAATCTAAAAGAGTTCTTTGAAATATTTGAAATTTAGTTAGTTACAGCGATTTTCCGAGCGAACGGACTTGAATTTGTAGCTTT
GCATCAGATTAATCCGATGGCATATGTTCCAAGACAAATACGTTTTCGCTCAATTGGCTTCATTTCTGAATCGAAGTAAGTTTAACCGCATAGTCACCAA
GTATGATGGTGATAAATATGTGAAGCACTTCACCTGCTGGAATCAACTACTTGCTTTGATGTTTGGTCAACTTTCTAATCGTGAAAGTCTGCGAGATTTG
ATAGTTGCTCTTGAAGCTCATCATTCCAAATGTTATCATTTAGGAATGGGTAAAAATGTATCAAAGTCATCGCTGGCAAGAGCAAATCAAGATAGAGACT
ATCACATCTTTGAAGAATATGCTTACTACCTGGTTAGCGAAGCACGACAAAAGTGTGCTAATCATATTTTCAAACTTGGCGGTAACGTTTATGCTTTCGA
TTCGACAACTATTGACCTGTGCCTTTCAGTCTTTTGGTGGGCAAAATTCCGCAAAAAGAAAGGTGGTATCAAAGTGCATACATTATATGATGTGGAAACA
CAGATTCCTGCATTCTTTCATATCACGGAAGCATCCGTACACGATTACTAAAGTTATGATTGAAATTCCTTATGAACCAAGCTCTTATTACATCTTTGAC
CGCGGTTATAACAACTTCAAAATGCTGTATAAAATTCATCAAATTGAAGCCTACTTTGTTGTCAGAGCAAAAAAGAATCTTCAATACAAATCCATCCAAT
GGAAACGTAGACTGCCTAAGAATGTGCTTTCAGACGCAAGTGTACTTCTGACAGGATTCTATCCTAAACAATATTACCCAAAGCCACTTAGACTGGTTAA
ATATTGGGATGAAGAACAAGAACGAGAATTTACATTCATAACCAATGCGATGCATATATCTGCGCTTCAAGTTGCTGAACTTTATAAAAATCGCTGGCAG
GTAGAGCTGTTTTTCAAATGGCTCAAGCAGCACCTTAAAATCAAAAGATTTTGGGGAACTACAGAGAATGCTGTTCGAATACAGATATATGCTGCTATAT
GCGCTTACTGTTTGGTGGCAATCATTCAACACGATATGCAACTGGACAGAAGTACATATGAAGTGTTACAAATACTGAGCATCTCATTGACTGATAAGAC
TCATCTGAGAGACCTCTTTGATAAAACTAAATTTCAAAATGACAAAGAACGATTCGGACCAAATGGGCCAAGTTTATTTAATTTTTAATTCGTCCCAATT
TTAATGGGACACTAATG
GCATCAGATTAATCCGATGGCATATGTTCCAAGACAAATACGTTTTCGCTCAATTGGCTTCATTTCTGAATCGAAGTAAGTTTAACCGCATAGTCACCAA
GTATGATGGTGATAAATATGTGAAGCACTTCACCTGCTGGAATCAACTACTTGCTTTGATGTTTGGTCAACTTTCTAATCGTGAAAGTCTGCGAGATTTG
ATAGTTGCTCTTGAAGCTCATCATTCCAAATGTTATCATTTAGGAATGGGTAAAAATGTATCAAAGTCATCGCTGGCAAGAGCAAATCAAGATAGAGACT
ATCACATCTTTGAAGAATATGCTTACTACCTGGTTAGCGAAGCACGACAAAAGTGTGCTAATCATATTTTCAAACTTGGCGGTAACGTTTATGCTTTCGA
TTCGACAACTATTGACCTGTGCCTTTCAGTCTTTTGGTGGGCAAAATTCCGCAAAAAGAAAGGTGGTATCAAAGTGCATACATTATATGATGTGGAAACA
CAGATTCCTGCATTCTTTCATATCACGGAAGCATCCGTACACGATTACTAAAGTTATGATTGAAATTCCTTATGAACCAAGCTCTTATTACATCTTTGAC
CGCGGTTATAACAACTTCAAAATGCTGTATAAAATTCATCAAATTGAAGCCTACTTTGTTGTCAGAGCAAAAAAGAATCTTCAATACAAATCCATCCAAT
GGAAACGTAGACTGCCTAAGAATGTGCTTTCAGACGCAAGTGTACTTCTGACAGGATTCTATCCTAAACAATATTACCCAAAGCCACTTAGACTGGTTAA
ATATTGGGATGAAGAACAAGAACGAGAATTTACATTCATAACCAATGCGATGCATATATCTGCGCTTCAAGTTGCTGAACTTTATAAAAATCGCTGGCAG
GTAGAGCTGTTTTTCAAATGGCTCAAGCAGCACCTTAAAATCAAAAGATTTTGGGGAACTACAGAGAATGCTGTTCGAATACAGATATATGCTGCTATAT
GCGCTTACTGTTTGGTGGCAATCATTCAACACGATATGCAACTGGACAGAAGTACATATGAAGTGTTACAAATACTGAGCATCTCATTGACTGATAAGAC
TCATCTGAGAGACCTCTTTGATAAAACTAAATTTCAAAATGACAAAGAACGATTCGGACCAAATGGGCCAAGTTTATTTAATTTTTAATTCGTCCCAATT
TTAATGGGACACTAATG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
933 bp | 310 aa | 356 | 1288 | + | No |
Chemistry : DDE
ORF sequence :
MYQSHRWQEQIKIETITSLKNMLTTWLAKHDKSVLIIFSNLAVTFMLSIRQLLTCAFQSFGGQNSAKRKVVSKCIHYMMWKHRFLHSFISRKHPYTITKV
MEIPYEPSSYYIFDRGYNNFKMLYKIHQIEAYFVVRAKKNLQYKSIQWKRRLPKNVLSDASVLLTGFYPKQYYPKPLRLVKYWDEEQEREFTFITNAMHI
SALQVAELYKNRWQVELFFKWLKQHLKIKRFWGTTENAVRIQIYAAICAYCLVAIIQHDMQLDRSTYEVLQILSISLTDKTHLRDLFDKTKFQNDKERFG
PNGPSLFNF
MEIPYEPSSYYIFDRGYNNFKMLYKIHQIEAYFVVRAKKNLQYKSIQWKRRLPKNVLSDASVLLTGFYPKQYYPKPLRLVKYWDEEQEREFTFITNAMHI
SALQVAELYKNRWQVELFFKWLKQHLKIKRFWGTTENAVRIQIYAAICAYCLVAIIQHDMQLDRSTYEVLQILSISLTDKTHLRDLFDKTKFQNDKERFG
PNGPSLFNF
Blast result :
Comments
References
1] Xu,J., Bjursell,M.K., Himrod,J., Deng,S., Carmichael,L.K., Chiang,H.C., Hooper,L.V. and Gordon,J.I. (2002) Direct submission