ISBthe1

  • Family IS4
  • Group IS4Sa
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_004663 ND Bacteroides thetaiotaomicron
Bacteroides thetaiotaomicron VPI-5482
DNA section
IS Length : 1317 bp

Ends


IR Length : 20

IRL : CATTGCTGTCCCATTAAAATCTAAAAGAGTTCTTTGAAATATTTGAAATT
IRR : CATTAGTGTCCCATTAAAATTGGGACGAATTAAAAATTAAATAAACTTGG

Insertion site


Left flankDirect repeatRight flankDR Length

DNA sequence

CATTGCTGTCCCATTAAAATCTAAAAGAGTTCTTTGAAATATTTGAAATTTAGTTAGTTACAGCGATTTTCCGAGCGAACGGACTTGAATTTGTAGCTTT
GCATCAGATTAATCCGATGGCATATGTTCCAAGACAAATACGTTTTCGCTCAATTGGCTTCATTTCTGAATCGAAGTAAGTTTAACCGCATAGTCACCAA
GTATGATGGTGATAAATATGTGAAGCACTTCACCTGCTGGAATCAACTACTTGCTTTGATGTTTGGTCAACTTTCTAATCGTGAAAGTCTGCGAGATTTG
ATAGTTGCTCTTGAAGCTCATCATTCCAAATGTTATCATTTAGGAATGGGTAAAAATGTATCAAAGTCATCGCTGGCAAGAGCAAATCAAGATAGAGACT
ATCACATCTTTGAAGAATATGCTTACTACCTGGTTAGCGAAGCACGACAAAAGTGTGCTAATCATATTTTCAAACTTGGCGGTAACGTTTATGCTTTCGA
TTCGACAACTATTGACCTGTGCCTTTCAGTCTTTTGGTGGGCAAAATTCCGCAAAAAGAAAGGTGGTATCAAAGTGCATACATTATATGATGTGGAAACA
CAGATTCCTGCATTCTTTCATATCACGGAAGCATCCGTACACGATTACTAAAGTTATGATTGAAATTCCTTATGAACCAAGCTCTTATTACATCTTTGAC
CGCGGTTATAACAACTTCAAAATGCTGTATAAAATTCATCAAATTGAAGCCTACTTTGTTGTCAGAGCAAAAAAGAATCTTCAATACAAATCCATCCAAT
GGAAACGTAGACTGCCTAAGAATGTGCTTTCAGACGCAAGTGTACTTCTGACAGGATTCTATCCTAAACAATATTACCCAAAGCCACTTAGACTGGTTAA
ATATTGGGATGAAGAACAAGAACGAGAATTTACATTCATAACCAATGCGATGCATATATCTGCGCTTCAAGTTGCTGAACTTTATAAAAATCGCTGGCAG
GTAGAGCTGTTTTTCAAATGGCTCAAGCAGCACCTTAAAATCAAAAGATTTTGGGGAACTACAGAGAATGCTGTTCGAATACAGATATATGCTGCTATAT
GCGCTTACTGTTTGGTGGCAATCATTCAACACGATATGCAACTGGACAGAAGTACATATGAAGTGTTACAAATACTGAGCATCTCATTGACTGATAAGAC
TCATCTGAGAGACCTCTTTGATAAAACTAAATTTCAAAATGACAAAGAACGATTCGGACCAAATGGGCCAAGTTTATTTAATTTTTAATTCGTCCCAATT
TTAATGGGACACTAATG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
933 bp310 aa3561288+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MYQSHRWQEQIKIETITSLKNMLTTWLAKHDKSVLIIFSNLAVTFMLSIRQLLTCAFQSFGGQNSAKRKVVSKCIHYMMWKHRFLHSFISRKHPYTITKV
MEIPYEPSSYYIFDRGYNNFKMLYKIHQIEAYFVVRAKKNLQYKSIQWKRRLPKNVLSDASVLLTGFYPKQYYPKPLRLVKYWDEEQEREFTFITNAMHI
SALQVAELYKNRWQVELFFKWLKQHLKIKRFWGTTENAVRIQIYAAICAYCLVAIIQHDMQLDRSTYEVLQILSISLTDKTHLRDLFDKTKFQNDKERFG
PNGPSLFNF

 

Blast result :
Comments
References
1] Xu,J., Bjursell,M.K., Himrod,J., Deng,S., Carmichael,L.K., Chiang,H.C., Hooper,L.V. and Gordon,J.I. (2002) Direct submission