ISUnCu1

  • Family IS110
  • Group IS1111
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AY139602 ND uncultured bacterium
uncultured bacterium plasmid pSp7
DNA section
IS Length : 1381 bp

Ends


IR Length : 11/12

IRL : tgctgtaATGGACTCCCCCGCACCACCCTTATATACCAGGCATCGTGGTG
IRR : ----tatATGGACTCTCCCCACAAGTAGTGAGCAAAGCATTGCTTTTGCA

Insertion site


Left flankDirect repeatRight flankDR Length

DNA sequence

TGCTGTAATGGACTCCCCCGCACCACCCTTATATACCAGGCATCGTGGTGGCTGAAATTGGGAGAGGCGATATGAAACGCATTGCAGTTGATCTGGCCAA
GTCCGTTTACCAAGTTGCCGAGAGTGTCCGTTCCGGCCAGGTGGTGCAGCGCAAGCGGCTGAACCGAGAGGCGTTCCGGCGATATATACAGGAGCAGGCC
GAACCGGTCGAGTGGGTGATGGAGGCCTGTGGCACGGCCCACTACTGGGGACGTGTAGCGCAAGCCCTGGGGCATCAGGTGAGGCTGCTGCATCCGCGCT
ACGTGCGGCCCTATCGCCGCCGCAACAAGACCGATCGCAATGACTGCGACGCCATGCTCGAAGCGACGCGCTGCACCGATATTCATCCCGTGCCGGTGAA
AAGCCACGACCAGCAACAGCTGCAACAGTTGCACGGGCTGCGGGAAACCTGGAAGAAAAGCCGCACCCAGCGGATCAACCTGCTGCGCGGCCTCTTGCGT
GAAGCTGGTATCGAGGCCCCCGCCTCGACCGCTGCCTTCATCCGCGCCGCCAGCGAGCGGGTTGACCAGCCCGAGCTCGCACCCCTGAGCCGTCTGCTGC
ATATCGTCCTGGCCGAAATCAACCTGTATGAACAGTGCATGGCCGAGTGCGAGCAGCAGCTCAAGCGCTGGCATGCCGACGATGACATCGTACGCAAGCT
GGATGAGGTCAGCGGCATTGGGCTGCTGACCGCCAGCGCCCTGACAGCCGCCGTTGGCAGGCCCGAGCGCTTTGCCAGTGGTCGCCAGCTCAGTGCCTGG
CTGGGCATGACCCCGCGCGAGTTCAGCAGTGGCGAGCGCCGCAAGCTCGGCCACATCAGCCGACAGGGCAACGTCTATGTGCGTACCCTGCTAATCCATG
GCTCACGGGCAGCCTTGCTGGCTGCACAACGCTGTCAGGCACGCACCCCGGAAAAAGCTGACGCAACTGCAACGCTGGGCCGTGGCAACGGCGGCGCGCA
TCGGCCACAACAAGGCAGCGGTAGCCCTGGCCAACAAACTGGTGCGGATCTGCTGGGCCGTGTGGTGCCATGAGCGGCGCTTCAATGGCAATTGGCAAAG
CACAAAGCCCGCCTGACGGCGGGAGTAATCAGAACGGCAAGATGGTTTTCAGGTGGTTGTGGTGAACAGCAGCACTGTCGGAACAGGCGAGTCCTGCAGC
GGAATAAGGCCGATAACAATCATGATCCGCGTGATCGATTGAACGCTTGGCCCCCGCTGCGCGAACTACAGATTGGCCAGGGCGGAAAAGCCCACAACAG
GCCGGATATACGAATGCAACCGCGCTGACGACAGGTGCAAAAGCAATGCTTTGCTCACTACTTGTGGGGAGAGTCCATATA
Protein section
ORF number : 0

 

Comments
The IR of this IS are not at its termini. In the IS sequence as given 7 nt separate IRl from the left-hand end of the element and 3 nt separate IRr from the right-hand end. Unlike most IS1111 family elements, the first nt of the sequence shown (T) does not match the 4th nt to the right of IRr (C; not shown in above sequence).

This IS is found within the 59-base element of the aadA1 gene cassette.

The transposase protein has frameshifts.
Found in uncultured bacterium from activated sludge plasmid pSp7.
References
1] Tennstedt et al. (2003) FEMS Microbiol. Ecol. 45, 239-252
2] Partridge and Hall (2003) J. Bacteriol. 185, 6371-6384