ISUnCu1
- Family IS110
- Group IS1111
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AY139602 | ND | uncultured bacterium | uncultured bacterium plasmid pSp7 |
DNA section
IS Length : 1381 bp
Ends
IR Length : 11/12
IRL : tgctgtaATGGACTCCCCCGCACCACCCTTATATACCAGGCATCGTGGTG
IRR : ----tatATGGACTCTCCCCACAAGTAGTGAGCAAAGCATTGCTTTTGCA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|
DNA sequence
TGCTGTAATGGACTCCCCCGCACCACCCTTATATACCAGGCATCGTGGTGGCTGAAATTGGGAGAGGCGATATGAAACGCATTGCAGTTGATCTGGCCAA
GTCCGTTTACCAAGTTGCCGAGAGTGTCCGTTCCGGCCAGGTGGTGCAGCGCAAGCGGCTGAACCGAGAGGCGTTCCGGCGATATATACAGGAGCAGGCC
GAACCGGTCGAGTGGGTGATGGAGGCCTGTGGCACGGCCCACTACTGGGGACGTGTAGCGCAAGCCCTGGGGCATCAGGTGAGGCTGCTGCATCCGCGCT
ACGTGCGGCCCTATCGCCGCCGCAACAAGACCGATCGCAATGACTGCGACGCCATGCTCGAAGCGACGCGCTGCACCGATATTCATCCCGTGCCGGTGAA
AAGCCACGACCAGCAACAGCTGCAACAGTTGCACGGGCTGCGGGAAACCTGGAAGAAAAGCCGCACCCAGCGGATCAACCTGCTGCGCGGCCTCTTGCGT
GAAGCTGGTATCGAGGCCCCCGCCTCGACCGCTGCCTTCATCCGCGCCGCCAGCGAGCGGGTTGACCAGCCCGAGCTCGCACCCCTGAGCCGTCTGCTGC
ATATCGTCCTGGCCGAAATCAACCTGTATGAACAGTGCATGGCCGAGTGCGAGCAGCAGCTCAAGCGCTGGCATGCCGACGATGACATCGTACGCAAGCT
GGATGAGGTCAGCGGCATTGGGCTGCTGACCGCCAGCGCCCTGACAGCCGCCGTTGGCAGGCCCGAGCGCTTTGCCAGTGGTCGCCAGCTCAGTGCCTGG
CTGGGCATGACCCCGCGCGAGTTCAGCAGTGGCGAGCGCCGCAAGCTCGGCCACATCAGCCGACAGGGCAACGTCTATGTGCGTACCCTGCTAATCCATG
GCTCACGGGCAGCCTTGCTGGCTGCACAACGCTGTCAGGCACGCACCCCGGAAAAAGCTGACGCAACTGCAACGCTGGGCCGTGGCAACGGCGGCGCGCA
TCGGCCACAACAAGGCAGCGGTAGCCCTGGCCAACAAACTGGTGCGGATCTGCTGGGCCGTGTGGTGCCATGAGCGGCGCTTCAATGGCAATTGGCAAAG
CACAAAGCCCGCCTGACGGCGGGAGTAATCAGAACGGCAAGATGGTTTTCAGGTGGTTGTGGTGAACAGCAGCACTGTCGGAACAGGCGAGTCCTGCAGC
GGAATAAGGCCGATAACAATCATGATCCGCGTGATCGATTGAACGCTTGGCCCCCGCTGCGCGAACTACAGATTGGCCAGGGCGGAAAAGCCCACAACAG
GCCGGATATACGAATGCAACCGCGCTGACGACAGGTGCAAAAGCAATGCTTTGCTCACTACTTGTGGGGAGAGTCCATATA
GTCCGTTTACCAAGTTGCCGAGAGTGTCCGTTCCGGCCAGGTGGTGCAGCGCAAGCGGCTGAACCGAGAGGCGTTCCGGCGATATATACAGGAGCAGGCC
GAACCGGTCGAGTGGGTGATGGAGGCCTGTGGCACGGCCCACTACTGGGGACGTGTAGCGCAAGCCCTGGGGCATCAGGTGAGGCTGCTGCATCCGCGCT
ACGTGCGGCCCTATCGCCGCCGCAACAAGACCGATCGCAATGACTGCGACGCCATGCTCGAAGCGACGCGCTGCACCGATATTCATCCCGTGCCGGTGAA
AAGCCACGACCAGCAACAGCTGCAACAGTTGCACGGGCTGCGGGAAACCTGGAAGAAAAGCCGCACCCAGCGGATCAACCTGCTGCGCGGCCTCTTGCGT
GAAGCTGGTATCGAGGCCCCCGCCTCGACCGCTGCCTTCATCCGCGCCGCCAGCGAGCGGGTTGACCAGCCCGAGCTCGCACCCCTGAGCCGTCTGCTGC
ATATCGTCCTGGCCGAAATCAACCTGTATGAACAGTGCATGGCCGAGTGCGAGCAGCAGCTCAAGCGCTGGCATGCCGACGATGACATCGTACGCAAGCT
GGATGAGGTCAGCGGCATTGGGCTGCTGACCGCCAGCGCCCTGACAGCCGCCGTTGGCAGGCCCGAGCGCTTTGCCAGTGGTCGCCAGCTCAGTGCCTGG
CTGGGCATGACCCCGCGCGAGTTCAGCAGTGGCGAGCGCCGCAAGCTCGGCCACATCAGCCGACAGGGCAACGTCTATGTGCGTACCCTGCTAATCCATG
GCTCACGGGCAGCCTTGCTGGCTGCACAACGCTGTCAGGCACGCACCCCGGAAAAAGCTGACGCAACTGCAACGCTGGGCCGTGGCAACGGCGGCGCGCA
TCGGCCACAACAAGGCAGCGGTAGCCCTGGCCAACAAACTGGTGCGGATCTGCTGGGCCGTGTGGTGCCATGAGCGGCGCTTCAATGGCAATTGGCAAAG
CACAAAGCCCGCCTGACGGCGGGAGTAATCAGAACGGCAAGATGGTTTTCAGGTGGTTGTGGTGAACAGCAGCACTGTCGGAACAGGCGAGTCCTGCAGC
GGAATAAGGCCGATAACAATCATGATCCGCGTGATCGATTGAACGCTTGGCCCCCGCTGCGCGAACTACAGATTGGCCAGGGCGGAAAAGCCCACAACAG
GCCGGATATACGAATGCAACCGCGCTGACGACAGGTGCAAAAGCAATGCTTTGCTCACTACTTGTGGGGAGAGTCCATATA
Protein section
ORF number : 0
Comments
The IR of this IS are not at its termini. In the IS sequence as given 7 nt separate IRl from the left-hand end of the element and 3 nt separate IRr from the right-hand end. Unlike most IS1111 family elements, the first nt of the sequence shown (T) does not match the 4th nt to the right of IRr (C; not shown in above sequence).
This IS is found within the 59-base element of the aadA1 gene cassette.
The transposase protein has frameshifts.
Found in uncultured bacterium from activated sludge plasmid pSp7.
This IS is found within the 59-base element of the aadA1 gene cassette.
The transposase protein has frameshifts.
Found in uncultured bacterium from activated sludge plasmid pSp7.
References
1] Tennstedt et al. (2003) FEMS Microbiol. Ecol. 45, 239-252
2] Partridge and Hall (2003) J. Bacteriol. 185, 6371-6384
2] Partridge and Hall (2003) J. Bacteriol. 185, 6371-6384