ISBlo8

  • Family IS256
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_004307 ND Bifidobacterium longum
Bifidobacterium longum NCC2705
DNA section
IS Length : 1408 bp

Ends


IR Length : 27/32

IRL : GGGACTGTCTCTCGAAGTGTGTAACTGGCCTTAACTGGCCGGTCGTGTGG
IRR : GGGCCTGTCTCGTTAAGTGTGTAACTGGCGTTTTCATTGTTGTGTTCCCT

Insertion site


Left flankDirect repeatRight flankDR Length

DNA sequence

GGGACTGTCTCTCGAAGTGTGTAACTGGCCTTAACTGGCCGGTCGTGTGGCCGGTCGGAAAGGCTGGTGGACGATGTCTGCTGGGACAAGGGGAAACATG
ACACCGACGAAGAAGCCGGACGCGGAAAAACGCAACGCCGAGCGGGAGGCGGCGCTCACATTCGTGCGCATGGCCAAGGAAAAAGGACTGGACCTGACAG
GGCCCGACGGACTGCTCAAACAGTTCACCAAAAGCGTGCTGGAGACGGCCCTGGACGAGGAGATGACCGAGCACCTGGGCCGCGCCAAGCACAAGAAATC
CAAGGACGGCAGGGCCGCGAACACGCGCAACGGCACCACCGCCAAGACCGTGGTCACCGATTCGGTAGGTCCGGTCGGGATCGAGGTGCCGCGAGACCGC
GATGGCTCGTTCGAGCCGGTCGTCGTCAGGAAACGGCAGCGGCGGCTGCCCGGGGTGGACGAGGTGGTGCTGTCCCTGTATGCCAGGGGCCTGACCACCG
GCGAGATCAGCGCCCACTTCCAGGAGATCTACGGGGCGGACGTGTCCAGGGAGACCGTCAGTCGCATCACCGAGCGGGTCGTGGCCGAGAAGGACGAATG
GTGCTCGCGTCCCCTGGATCGTGTGTACGCGGCCGTGTTCATCGACGCGACCGTCGTCAAGGTGCGCGACGGGCAGGTCGCCAACCGCGCGTTCTACGTG
GCCGTTGGCGTGGATCTGGAGGGCGGCCGCGACGTGCTGGGCATCTGGGCGTCGCCCGCCGCGGAGGGCGCACGCTATTGGCTGTCGGTGCTCACCGAGC
TGAAGAACCGGGGCGTGGACGATGTGTTCTTCCTGATCTGCGACGGGCTCAAAGGCCTGCCCGACGCGGTGGGCGCGGTATGGCCTCTGGCCATCGTGCA
GACCTGCGTGGTGCATCTGCTGCGCAACACGTTCCGCTACGCGTCGAAGAAGGACTGGGACGCCATCAAACGCGATGTCAAACCCATCTACACCGCGCCG
AGCGCCGCCGCCGCGGCGGCGGCCCGCGACGCGATGCTGGACAAGTGGGAGGCGAGATATCCCGCGATCCGCAGGCTGTGGATGGACGCGTGGGAACGGT
TCATACCGTTCCTGGACTATGACGTGGAGATCCGGCGCGTGATCTGCACGACCAACGCCATCGAATCGCTCAACGCGAGATTCAAGCGCTCCATCCGCGC
CCGCGGCCACTTCCCCGACGAGCAGGCCGCGCTCAAGTGCATGTACCTGACCGTCCGCTCGCTGGACCCCACCGGCAAGGGACGGATACGATGGAGCGCG
CGCTGGAAGCCCGCGCTCAACGCCTTTGCCATCACCTTCGCCGACCGCTGGCCAAGCGAGGGAACACAACAATGAAAACGCCAGTTACACACTTAACGAG
ACAGGCCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1302 bp425 aa741375+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MTPTKKPDAEKRNAEREAALTFVRMAKEKGLDLTGPDGLLKQFTKSVLETALDEEMTEHLGRAKHKKSKDGRAANTRNGTTAKTVVTDSVGPVGIEVPRD
RDGSFEPVVVRKRQRRLPGVDEVVLSLYARGLTTGEISAHFQEIYGADVSRETVSRITERVVAEKDEWCSRPLDRVYAAVFIDATVVKVRDGQVANRAFY
VAVGVDLEGGRDVLGIWASPAAEGARYWLSVLTELKNRGVDDVFFLICDGLKGLPDAVGAVWPLAIVQTCVVHLLRNTFRYASKKDWDAIKRDVKPIYTA
PSAAAAAAARDAMLDKWEARYPAIRRLWMDAWERFIPFLDYDVEIRRVICTTNAIESLNARFKRSIRARGHFPDEQAALKCMYLTVRSLDPTGKGRIRWS
ARWKPALNAFAITFADRWPSEGTQQ

 

Blast result :
Comments
As this element is unique in the genome of NCC2705, its limits have been found by comparison with IS1554 (65.5% identity at the DNA level).

Coordinates:
ISBlo8a 2124740..2126147
References
1] Schell,M.A., Karmirantzou,M., Snel,B., Vilanova,D., Berger,B., Pessi,G., Zwahlen,M.-C., Desiere,F., Bork,P., Delley,M., Pridmore,D. and Arigoni,F. (2002)Proc. Natl. Acad. Sci. U.S.A. 99 (22), 14422-14427