ISBlo8
- Family IS256
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_004307 | ND | Bifidobacterium longum | Bifidobacterium longum NCC2705 |
DNA section
IS Length : 1408 bp
Ends
IR Length : 27/32
IRL : GGGACTGTCTCTCGAAGTGTGTAACTGGCCTTAACTGGCCGGTCGTGTGG
IRR : GGGCCTGTCTCGTTAAGTGTGTAACTGGCGTTTTCATTGTTGTGTTCCCT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|
DNA sequence
GGGACTGTCTCTCGAAGTGTGTAACTGGCCTTAACTGGCCGGTCGTGTGGCCGGTCGGAAAGGCTGGTGGACGATGTCTGCTGGGACAAGGGGAAACATG
ACACCGACGAAGAAGCCGGACGCGGAAAAACGCAACGCCGAGCGGGAGGCGGCGCTCACATTCGTGCGCATGGCCAAGGAAAAAGGACTGGACCTGACAG
GGCCCGACGGACTGCTCAAACAGTTCACCAAAAGCGTGCTGGAGACGGCCCTGGACGAGGAGATGACCGAGCACCTGGGCCGCGCCAAGCACAAGAAATC
CAAGGACGGCAGGGCCGCGAACACGCGCAACGGCACCACCGCCAAGACCGTGGTCACCGATTCGGTAGGTCCGGTCGGGATCGAGGTGCCGCGAGACCGC
GATGGCTCGTTCGAGCCGGTCGTCGTCAGGAAACGGCAGCGGCGGCTGCCCGGGGTGGACGAGGTGGTGCTGTCCCTGTATGCCAGGGGCCTGACCACCG
GCGAGATCAGCGCCCACTTCCAGGAGATCTACGGGGCGGACGTGTCCAGGGAGACCGTCAGTCGCATCACCGAGCGGGTCGTGGCCGAGAAGGACGAATG
GTGCTCGCGTCCCCTGGATCGTGTGTACGCGGCCGTGTTCATCGACGCGACCGTCGTCAAGGTGCGCGACGGGCAGGTCGCCAACCGCGCGTTCTACGTG
GCCGTTGGCGTGGATCTGGAGGGCGGCCGCGACGTGCTGGGCATCTGGGCGTCGCCCGCCGCGGAGGGCGCACGCTATTGGCTGTCGGTGCTCACCGAGC
TGAAGAACCGGGGCGTGGACGATGTGTTCTTCCTGATCTGCGACGGGCTCAAAGGCCTGCCCGACGCGGTGGGCGCGGTATGGCCTCTGGCCATCGTGCA
GACCTGCGTGGTGCATCTGCTGCGCAACACGTTCCGCTACGCGTCGAAGAAGGACTGGGACGCCATCAAACGCGATGTCAAACCCATCTACACCGCGCCG
AGCGCCGCCGCCGCGGCGGCGGCCCGCGACGCGATGCTGGACAAGTGGGAGGCGAGATATCCCGCGATCCGCAGGCTGTGGATGGACGCGTGGGAACGGT
TCATACCGTTCCTGGACTATGACGTGGAGATCCGGCGCGTGATCTGCACGACCAACGCCATCGAATCGCTCAACGCGAGATTCAAGCGCTCCATCCGCGC
CCGCGGCCACTTCCCCGACGAGCAGGCCGCGCTCAAGTGCATGTACCTGACCGTCCGCTCGCTGGACCCCACCGGCAAGGGACGGATACGATGGAGCGCG
CGCTGGAAGCCCGCGCTCAACGCCTTTGCCATCACCTTCGCCGACCGCTGGCCAAGCGAGGGAACACAACAATGAAAACGCCAGTTACACACTTAACGAG
ACAGGCCC
ACACCGACGAAGAAGCCGGACGCGGAAAAACGCAACGCCGAGCGGGAGGCGGCGCTCACATTCGTGCGCATGGCCAAGGAAAAAGGACTGGACCTGACAG
GGCCCGACGGACTGCTCAAACAGTTCACCAAAAGCGTGCTGGAGACGGCCCTGGACGAGGAGATGACCGAGCACCTGGGCCGCGCCAAGCACAAGAAATC
CAAGGACGGCAGGGCCGCGAACACGCGCAACGGCACCACCGCCAAGACCGTGGTCACCGATTCGGTAGGTCCGGTCGGGATCGAGGTGCCGCGAGACCGC
GATGGCTCGTTCGAGCCGGTCGTCGTCAGGAAACGGCAGCGGCGGCTGCCCGGGGTGGACGAGGTGGTGCTGTCCCTGTATGCCAGGGGCCTGACCACCG
GCGAGATCAGCGCCCACTTCCAGGAGATCTACGGGGCGGACGTGTCCAGGGAGACCGTCAGTCGCATCACCGAGCGGGTCGTGGCCGAGAAGGACGAATG
GTGCTCGCGTCCCCTGGATCGTGTGTACGCGGCCGTGTTCATCGACGCGACCGTCGTCAAGGTGCGCGACGGGCAGGTCGCCAACCGCGCGTTCTACGTG
GCCGTTGGCGTGGATCTGGAGGGCGGCCGCGACGTGCTGGGCATCTGGGCGTCGCCCGCCGCGGAGGGCGCACGCTATTGGCTGTCGGTGCTCACCGAGC
TGAAGAACCGGGGCGTGGACGATGTGTTCTTCCTGATCTGCGACGGGCTCAAAGGCCTGCCCGACGCGGTGGGCGCGGTATGGCCTCTGGCCATCGTGCA
GACCTGCGTGGTGCATCTGCTGCGCAACACGTTCCGCTACGCGTCGAAGAAGGACTGGGACGCCATCAAACGCGATGTCAAACCCATCTACACCGCGCCG
AGCGCCGCCGCCGCGGCGGCGGCCCGCGACGCGATGCTGGACAAGTGGGAGGCGAGATATCCCGCGATCCGCAGGCTGTGGATGGACGCGTGGGAACGGT
TCATACCGTTCCTGGACTATGACGTGGAGATCCGGCGCGTGATCTGCACGACCAACGCCATCGAATCGCTCAACGCGAGATTCAAGCGCTCCATCCGCGC
CCGCGGCCACTTCCCCGACGAGCAGGCCGCGCTCAAGTGCATGTACCTGACCGTCCGCTCGCTGGACCCCACCGGCAAGGGACGGATACGATGGAGCGCG
CGCTGGAAGCCCGCGCTCAACGCCTTTGCCATCACCTTCGCCGACCGCTGGCCAAGCGAGGGAACACAACAATGAAAACGCCAGTTACACACTTAACGAG
ACAGGCCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1302 bp | 425 aa | 74 | 1375 | + | No |
Chemistry : DDE
ORF sequence :
MTPTKKPDAEKRNAEREAALTFVRMAKEKGLDLTGPDGLLKQFTKSVLETALDEEMTEHLGRAKHKKSKDGRAANTRNGTTAKTVVTDSVGPVGIEVPRD
RDGSFEPVVVRKRQRRLPGVDEVVLSLYARGLTTGEISAHFQEIYGADVSRETVSRITERVVAEKDEWCSRPLDRVYAAVFIDATVVKVRDGQVANRAFY
VAVGVDLEGGRDVLGIWASPAAEGARYWLSVLTELKNRGVDDVFFLICDGLKGLPDAVGAVWPLAIVQTCVVHLLRNTFRYASKKDWDAIKRDVKPIYTA
PSAAAAAAARDAMLDKWEARYPAIRRLWMDAWERFIPFLDYDVEIRRVICTTNAIESLNARFKRSIRARGHFPDEQAALKCMYLTVRSLDPTGKGRIRWS
ARWKPALNAFAITFADRWPSEGTQQ
RDGSFEPVVVRKRQRRLPGVDEVVLSLYARGLTTGEISAHFQEIYGADVSRETVSRITERVVAEKDEWCSRPLDRVYAAVFIDATVVKVRDGQVANRAFY
VAVGVDLEGGRDVLGIWASPAAEGARYWLSVLTELKNRGVDDVFFLICDGLKGLPDAVGAVWPLAIVQTCVVHLLRNTFRYASKKDWDAIKRDVKPIYTA
PSAAAAAAARDAMLDKWEARYPAIRRLWMDAWERFIPFLDYDVEIRRVICTTNAIESLNARFKRSIRARGHFPDEQAALKCMYLTVRSLDPTGKGRIRWS
ARWKPALNAFAITFADRWPSEGTQQ
Blast result :
Comments
As this element is unique in the genome of NCC2705, its limits have been found by comparison with IS1554 (65.5% identity at the DNA level).
Coordinates:
ISBlo8a 2124740..2126147
Coordinates:
ISBlo8a 2124740..2126147
References
1] Schell,M.A., Karmirantzou,M., Snel,B., Vilanova,D., Berger,B., Pessi,G., Zwahlen,M.-C., Desiere,F., Bork,P., Delley,M., Pridmore,D. and Arigoni,F. (2002)Proc. Natl. Acad. Sci. U.S.A. 99 (22), 14422-14427