ISPpu10
- Family IS110
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Pseudomonas putida | Pseudomonas putida KT2440 |
DNA section
IS Length : 1314 bp
Ends
Left end : TGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATAACTCGCTTCTGACTGTTCGCGCAGTACAGACCGTAGGAGAAATCACCCCTCCTCCTTTCAACAC
Right end : AATGCTGGGGAGAAATTCTCTGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAAT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TACCGTATTCGCGGGTAAACCCG | CT | CCTACAGTGG | 2 |
CGGCCTCTTCGCGGGTAAACCCG | CT | CCTACAGGCT | 2 |
TGCCTGCTTCGCGGGTAAACCCG | CT | CCTACGGGGG | 2 |
CGGCTCTTTCGCGGGTAAACCCG | CT | CCTACAGGGG | 2 |
TGGCCTCTTCGCGGGTAAACCCG | CT | CCTACATCGG | 2 |
CACCGTATTCGCGGGTAAACCCG | CT | CCTACCCCAA | 2 |
TGGCCCTTTCGCGGGTAAACCCG | CT | CCTACATGGG | 2 |
DNA sequence
TGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATAACTCGCTTCTGACTGTTCGCGCAGTACAGACCGTAGGAGAAATCACCCCTCCTCCTTTCAACAC
CCAAGCGCCGATAAGGAATGCCTCGCGAGCAAGCGACAATAGAAGCAAGCCTGCGCCAGGGTGTGCCCTTCAAGTCACACTACGCTACAAGGAGCAGCTA
TTCATGGCAATGTCCGCAATCCCAATCGAAGCTGGCGTGGACACCTCCAAAGATGAACTGGTGATTCAAGCCGCTCCGAATACCAAATCCTTCGCCATCC
CTAACACTCCGAAAGCAATCAAAGCCTGGCTCAAGACGCTGCCCAAAGGCTCAGCGCTGGCCATCGAAGCGACCAGTACCTATCACATGGAAATGGCGGA
GCAAGCCCATGCTGCGGGCTTCGCGGTATACGTTATCGATGGGCTGAGGCTGAGTAAGTACCGGGAAAGTGTTGCTATACGGGCAAAAACAGATGCCCAT
GATGCCGCTTTGCTCGCCCGCTTCCTGAGCAACGAGCGGGGCTCTTTGAAGGCTTGGACTCCGCCACCAGCCGGGCATCGTGAGATCCAGGTGCTGCTGC
GCCGCCGCGCCAAACTTGTAGCAGTGCGCGGCATGCTGCGGATGAGCTTGTCGGGCGACAAATTGTTTGCCTCAGAACTCAAACGTGTTGAGGAAGTGCT
CGAACGCATAGAGCTTTCGCTGGAAAAACAGCTGCGTGCGGTGATCAAGAAGGCGGGGCTTTCCGATCAGATGCGCCGTGTTCAGAGGCTTCCGGGTGTT
GGTTTCTTAACGGCTGCCGGCCTGGTGATGTCCTTCATGCGCGGCGAGTTCAAGAACAGCGACGCCTTTGTCGCTTATCTAGGCATGGATGTAACGGTTT
CCCAATCCGGTAAATGGGCAGGCAGAGGGAAGTTGAGCAAGCGCGGAGACTCGGAGGTCCGTAGACTCCTGTACAACGCCTCGATGAGCGGCAGTCGAAC
CGCGACCTGGAAGCAGTATTACGCCCATCACCAAGCCCGGGGGAAGAAAACCACTCAAGCCTTGGTGATCCTTGCACGTCGCTTGGCTCGGCTGGCCTTC
GGCCTGATGAGGCATCAGGCCGACTGGAAGCCCGAGATATATACCGGAGGTGCCAAGCCGGCCAGCTGAGGCTGGGGCTGCAACGCAGCCCGCCCAAACT
GACGGGCAGTATCCAATGCTGGGGAGAAATTCTCTGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCC
TCCGGCCATAGAAT
CCAAGCGCCGATAAGGAATGCCTCGCGAGCAAGCGACAATAGAAGCAAGCCTGCGCCAGGGTGTGCCCTTCAAGTCACACTACGCTACAAGGAGCAGCTA
TTCATGGCAATGTCCGCAATCCCAATCGAAGCTGGCGTGGACACCTCCAAAGATGAACTGGTGATTCAAGCCGCTCCGAATACCAAATCCTTCGCCATCC
CTAACACTCCGAAAGCAATCAAAGCCTGGCTCAAGACGCTGCCCAAAGGCTCAGCGCTGGCCATCGAAGCGACCAGTACCTATCACATGGAAATGGCGGA
GCAAGCCCATGCTGCGGGCTTCGCGGTATACGTTATCGATGGGCTGAGGCTGAGTAAGTACCGGGAAAGTGTTGCTATACGGGCAAAAACAGATGCCCAT
GATGCCGCTTTGCTCGCCCGCTTCCTGAGCAACGAGCGGGGCTCTTTGAAGGCTTGGACTCCGCCACCAGCCGGGCATCGTGAGATCCAGGTGCTGCTGC
GCCGCCGCGCCAAACTTGTAGCAGTGCGCGGCATGCTGCGGATGAGCTTGTCGGGCGACAAATTGTTTGCCTCAGAACTCAAACGTGTTGAGGAAGTGCT
CGAACGCATAGAGCTTTCGCTGGAAAAACAGCTGCGTGCGGTGATCAAGAAGGCGGGGCTTTCCGATCAGATGCGCCGTGTTCAGAGGCTTCCGGGTGTT
GGTTTCTTAACGGCTGCCGGCCTGGTGATGTCCTTCATGCGCGGCGAGTTCAAGAACAGCGACGCCTTTGTCGCTTATCTAGGCATGGATGTAACGGTTT
CCCAATCCGGTAAATGGGCAGGCAGAGGGAAGTTGAGCAAGCGCGGAGACTCGGAGGTCCGTAGACTCCTGTACAACGCCTCGATGAGCGGCAGTCGAAC
CGCGACCTGGAAGCAGTATTACGCCCATCACCAAGCCCGGGGGAAGAAAACCACTCAAGCCTTGGTGATCCTTGCACGTCGCTTGGCTCGGCTGGCCTTC
GGCCTGATGAGGCATCAGGCCGACTGGAAGCCCGAGATATATACCGGAGGTGCCAAGCCGGCCAGCTGAGGCTGGGGCTGCAACGCAGCCCGCCCAAACT
GACGGGCAGTATCCAATGCTGGGGAGAAATTCTCTGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCC
TCCGGCCATAGAAT
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
966 bp | 321 aa | 204 | 1169 | + | No |
Chemistry : DEDD
ORF sequence :
MAMSAIPIEAGVDTSKDELVIQAAPNTKSFAIPNTPKAIKAWLKTLPKGSALAIEATSTYHMEMAEQAHAAGFAVYVIDGLRLSKYRESVAIRAKTDAHD
AALLARFLSNERGSLKAWTPPPAGHREIQVLLRRRAKLVAVRGMLRMSLSGDKLFASELKRVEEVLERIELSLEKQLRAVIKKAGLSDQMRRVQRLPGVG
FLTAAGLVMSFMRGEFKNSDAFVAYLGMDVTVSQSGKWAGRGKLSKRGDSEVRRLLYNASMSGSRTATWKQYYAHHQARGKKTTQALVILARRLARLAFG
LMRHQADWKPEIYTGGAKPAS
AALLARFLSNERGSLKAWTPPPAGHREIQVLLRRRAKLVAVRGMLRMSLSGDKLFASELKRVEEVLERIELSLEKQLRAVIKKAGLSDQMRRVQRLPGVG
FLTAAGLVMSFMRGEFKNSDAFVAYLGMDVTVSQSGKWAGRGKLSKRGDSEVRRLLYNASMSGSRTATWKQYYAHHQARGKKTTQALVILARRLARLAFG
LMRHQADWKPEIYTGGAKPAS
Blast result :
Comments
There are 7 copies of ISPpu10 in this strain. he conserved target site is a species-specific repetitive extragenic palindromic (REP) sequence identified previously in Pseudomonas putida KT2440 (Aranda-Olmedo et.al. Nucleic Acids Res. 2002 Apr 15;30(8):1826-33.).
ISPpu10 is 45% aa similar to IS1000A.
ISPpu10 is 45% aa similar to IS1000A.
References
1] DeBoy., R. (2002) Direct submission