ISSeq6
- Family IS30
- Group
Isoform Synonym(s) ISSzo6
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_012470 | ND | Streptococcus equi | Streptococcus equi subsp. zooepidemicus H70 |
DNA section
IS Length : 1346 bp
Ends
IR Length : 19/20
IRL : TCTCAAAGTAAGTTCCAGGTGTCGTTGAAAACTAGAAATTAGACTGAGAC
IRR : TCTCAAAGTAAGTTCTAGGTAACTGGAAATTCGGATGGGACAAGTTCCTT
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| GTAGGTTAAA | CATCTCAGAG | 0 |
DNA sequence
TCTCAAAGTAAGTTCCAGGTGTCGTTGAAAACTAGAAATTAGACTGAGACAGAAAAATAAGGTAGAACTTACTTTGGGACAAGTCGGTAACCTACCATGA
AACACAAACAATTAACTCTCTCAGACCGTACAGACATTCAAATGGGAATTGAACAACGTAAACCTTTCTCTGCCATTGCAGCTAAACTCGGTAAAGACCC
TTCTACCATCTCTAAAGAAGTGCGTCGAAATCTCTTTATCAAAGAAACTACCGTACAATCCAATTGTAATACCTGCCCACTTCTTAAAAAAGCTCCTTAT
GTGTGCAACAACTGCCCTAGAAAAAGAAGTGACTGTGGTTTCAAAAAGCAATTCTACTACGCTAAAAAAGCTCAGCTCAATTATGAAACTCAGCTTTCTG
AAGCTAGAACTGGGGTCGCTCTTAACAAGGAAGAATTTTACACGATGGATAATATCGTCTCCTCTGCCATCAAGAAAGGACAGCACCTCAATCACATCAT
TTCCTCCAATAACCTAACTCCCTCTAGAGCTAGTAGTTACCGATACTTAGAAAAAGGCTATCTCTCTGCTAGACCTATTGACTTCCCTCGTGTCGTTAAG
TTTAGAAAGCGTAGAACCAGTCAGTTACCTCCGATTCCTAAGAAAGACAAGGTCGGAAGAACCTACGAGGATTTCCAGAAACATCAAGCTAAAGAAGACC
TAACTTCTTGGATTGAAATGGATACAGTCATTGGACGAATTGGCGGTAAGGTACTTCTCACCTTCAACGTCTCTTTATGTAACTTCATCTTTGCCAGACT
TCTTGATAATAAGACCGCTACAGAAGTCGCTAAACACCTCTACGCTATCAAGAACGACTTCTTTAAAGCAGATAGAGATTTTCACGAATTCTCTCCTGTC
ATTCTAACTGACAATGGTGGTGAATTCGCTAGAGTTGATAATATCGAAATGGACATTAGAGGCGAGCTTAAACTCTTTTTCTGTGACCCTAACCGCTCTG
ACCAGAAAGCGAGAATTGAGAAGAATCACACCTTTCTAAGAGACATTCTCCCTAAAGGAACAAGTTTTGACAACTTAACTCAAGACGACATCAATCTCGT
CTGTTCTCACGTGAACGGGGTCAGGCGACATGCTCTAAACGGAAAATCTGCTTATGAGCTCTTTACATTCACTTATGGGAAAGATATCGCCATTTTACTT
GGAATCACTAAAATCGACCCTGAAGATGTCCTACAGTCACCAAGGTTGTTGGACAAGTAACTCTTAATACTAAACTAATAAACCTCAAAAATTAGAAAGG
AACTTGTCCCATCCGAATTTCCAGTTACCTAGAACTTACTTTGAGA
AACACAAACAATTAACTCTCTCAGACCGTACAGACATTCAAATGGGAATTGAACAACGTAAACCTTTCTCTGCCATTGCAGCTAAACTCGGTAAAGACCC
TTCTACCATCTCTAAAGAAGTGCGTCGAAATCTCTTTATCAAAGAAACTACCGTACAATCCAATTGTAATACCTGCCCACTTCTTAAAAAAGCTCCTTAT
GTGTGCAACAACTGCCCTAGAAAAAGAAGTGACTGTGGTTTCAAAAAGCAATTCTACTACGCTAAAAAAGCTCAGCTCAATTATGAAACTCAGCTTTCTG
AAGCTAGAACTGGGGTCGCTCTTAACAAGGAAGAATTTTACACGATGGATAATATCGTCTCCTCTGCCATCAAGAAAGGACAGCACCTCAATCACATCAT
TTCCTCCAATAACCTAACTCCCTCTAGAGCTAGTAGTTACCGATACTTAGAAAAAGGCTATCTCTCTGCTAGACCTATTGACTTCCCTCGTGTCGTTAAG
TTTAGAAAGCGTAGAACCAGTCAGTTACCTCCGATTCCTAAGAAAGACAAGGTCGGAAGAACCTACGAGGATTTCCAGAAACATCAAGCTAAAGAAGACC
TAACTTCTTGGATTGAAATGGATACAGTCATTGGACGAATTGGCGGTAAGGTACTTCTCACCTTCAACGTCTCTTTATGTAACTTCATCTTTGCCAGACT
TCTTGATAATAAGACCGCTACAGAAGTCGCTAAACACCTCTACGCTATCAAGAACGACTTCTTTAAAGCAGATAGAGATTTTCACGAATTCTCTCCTGTC
ATTCTAACTGACAATGGTGGTGAATTCGCTAGAGTTGATAATATCGAAATGGACATTAGAGGCGAGCTTAAACTCTTTTTCTGTGACCCTAACCGCTCTG
ACCAGAAAGCGAGAATTGAGAAGAATCACACCTTTCTAAGAGACATTCTCCCTAAAGGAACAAGTTTTGACAACTTAACTCAAGACGACATCAATCTCGT
CTGTTCTCACGTGAACGGGGTCAGGCGACATGCTCTAAACGGAAAATCTGCTTATGAGCTCTTTACATTCACTTATGGGAAAGATATCGCCATTTTACTT
GGAATCACTAAAATCGACCCTGAAGATGTCCTACAGTCACCAAGGTTGTTGGACAAGTAACTCTTAATACTAAACTAATAAACCTCAAAAATTAGAAAGG
AACTTGTCCCATCCGAATTTCCAGTTACCTAGAACTTACTTTGAGA
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1164 bp | 387 aa | 97 | 1260 | + | No |
Chemistry : DDE
ORF sequence :
MKHKQLTLSDRTDIQMGIEQRKPFSAIAAKLGKDPSTISKEVRRNLFIKETTVQSNCNTCPLLKKAPYVCNNCPRKRSDCGFKKQFYYAKKAQLNYETQL
SEARTGVALNKEEFYTMDNIVSSAIKKGQHLNHIISSNNLTPSRASSYRYLEKGYLSARPIDFPRVVKFRKRRTSQLPPIPKKDKVGRTYEDFQKHQAKE
DLTSWIEMDTVIGRIGGKVLLTFNVSLCNFIFARLLDNKTATEVAKHLYAIKNDFFKADRDFHEFSPVILTDNGGEFARVDNIEMDIRGELKLFFCDPNR
SDQKARIEKNHTFLRDILPKGTSFDNLTQDDINLVCSHVNGVRRHALNGKSAYELFTFTYGKDIAILLGITKIDPEDVLQSPRLLDK
SEARTGVALNKEEFYTMDNIVSSAIKKGQHLNHIISSNNLTPSRASSYRYLEKGYLSARPIDFPRVVKFRKRRTSQLPPIPKKDKVGRTYEDFQKHQAKE
DLTSWIEMDTVIGRIGGKVLLTFNVSLCNFIFARLLDNKTATEVAKHLYAIKNDFFKADRDFHEFSPVILTDNGGEFARVDNIEMDIRGELKLFFCDPNR
SDQKARIEKNHTFLRDILPKGTSFDNLTQDDINLVCSHVNGVRRHALNGKSAYELFTFTYGKDIAILLGITKIDPEDVLQSPRLLDK
Blast result :
Comments
ISSeq6 is 78% aa similar to ISSpn9.
References
1] ISfinder submission (2012)
2] Holden,M.T., Heather,Z., Paillot,R., Steward,K.F., Webb,K., Ainslie,F., Jourdan,T., Bason,N.C., Holroyd,N.E., Mungall,K., Quail,M.A., Sanders,M., Simmonds,M., Willey,D., Brooks,K., Aanensen,D.M., Spratt,B.G., Jolley,K.A., Maiden,M.C., Kehoe,M., Chanter,N., Bentley,S.D., Robinson,C., Maskell,D.J., Parkhill,J. (2009) PLoS Pathog. 5 (3), E1000346 .
2] Holden,M.T., Heather,Z., Paillot,R., Steward,K.F., Webb,K., Ainslie,F., Jourdan,T., Bason,N.C., Holroyd,N.E., Mungall,K., Quail,M.A., Sanders,M., Simmonds,M., Willey,D., Brooks,K., Aanensen,D.M., Spratt,B.G., Jolley,K.A., Maiden,M.C., Kehoe,M., Chanter,N., Bentley,S.D., Robinson,C., Maskell,D.J., Parkhill,J. (2009) PLoS Pathog. 5 (3), E1000346 .