ISSiac1
- Family IS701
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NZ_AGRX01000079 | ND | Singulisphaera acidiphila | Singulisphaera acidiphila DSM 18658 |
DNA section
IS Length : 1358 bp
Ends
IR Length : 15/17
IRL : CTGGTATTTTGCAAACTGGTCCGCGGCAGCGTTAAAATAGGTAGACGAGG
IRR : CTGGTGTTTTGCAAAGTCAGGATAACCCCAGCTGAGCCACGACATGTTCA
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| CAAATCTAAT | GTAGAA | GGTACTTTCG | 6 |
| ATCCAACACC | TTCCTAA | GCTTCGATGG | 7 |
| GGTTCGGTAG | TTATGA | GGCACCAAAT | 6 |
| ATTCGGAAA | TTAGGA | TATTCGTGGG | 6 |
| GCCGTAAGTC | TTGTAG | TTGTAGGCGA | 6 |
DNA sequence
CTGGTATTTTGCAAACTGGTCCGCGGCAGCGTTAAAATAGGTAGACGAGGCTCGAGTTTTGCCCAAATTGCTCTGGCGCAGTTGGACTGCGGAGCATCGG
CTTATGCCTGGAATTATCGAATTTCCCAAGCTGGTCGAAGCCGCCCTGACCCAGCACGGCGACCTCTTCGCCAATGAGTGCCAACGTCGCCACTTCGCCG
AGTACCTCACCGGCCTGTTCGTCGCCGACCGGAAAACCGTCCTCGGCATTCATGACGAGTTCGCCCAGACCACCGACCAATCCTGCCTCAATCGCTTCCT
CACCGCCGCCCAGTGGGACCCCGAGACGCTCAACGATCGAAGGCTCGAGCAACTCCAGAAGGAGCCCTCCACTCGCTACAGCGTTCAGGGCGTCATCCCG
ATCGACAATACTCTCGTCGATCGGGACGGGATGCTGATTCCCGACGCCAACTGGTTCTGGGACCACACCGAAGAGCGGAACAAGATCGCCCAGGACTATC
TCTTCGTCAACTACGTCTGCACCAGCGGCAAGCACTACCCCCTGGAGTTCCGGCTCTTCCGCAAGCAAGAGGTCTGCGAAGCCTTGGACGAGCCGTTCCG
CAACCATACCGCCTTGTGCTGCGAGCTGATCGATTGGGTCTGCGAGCGGGGAATCCCCGGCGACTTCGCCATGGACTGCTACTTCACCAACGCCGAGGTC
CTCAACCACATTGATGGGAAGCAGGATCGGTTGGGACGGCCCCACGGTTACGTGGGCGATCTCAAGACCAACCGCAAGTTGGAGTGGAAGGGGGGGATCC
TCAAGGCCAACGAGTTGGCGGCGTCGATCCCGGTGGAGGACCGCAAAGCGATGAGGATCGGCGACCGTCGCCAGTGGTACTTCACGGTGACGGTCCGAAT
CCCCGGGGTGAACCACAAGGTGCGGATTGTCATCCTCTGGCACTACCGCAACGACGGGACGTGCTGCAAGATCCTGGTGACGAATCGGATTACCTGGGAG
GTGAGTCGGATCGTGCGGGTGTACCGCCATCGCTGGACAGGCACGGAGACGTTCCATCGGGACGGCAAGCAACAACTCGGGTTGGGTGACTGTCAGTTGC
GTGATGTCCAGGGTCAGACCCGGCATATGTACCTGGTCATGCTGGCGTACAGTCTGCTCATGAGCGAGTTGAAGCAGGGTCGTGCGAAGGAGTGGGCACT
CCATCGGCTGATGACCATCGGCGAGGCCTGTCGGGCGATGACGAGGGAAGCCCTGCGGACGACGCTCTCGTGGGCGATCGAGCAAGTCACGCAATTTGAG
CAACCCTATGAACATGTCGTGGCTCAGCTGGGGTTATCCTGACTTTGCAAAACACCAG
CTTATGCCTGGAATTATCGAATTTCCCAAGCTGGTCGAAGCCGCCCTGACCCAGCACGGCGACCTCTTCGCCAATGAGTGCCAACGTCGCCACTTCGCCG
AGTACCTCACCGGCCTGTTCGTCGCCGACCGGAAAACCGTCCTCGGCATTCATGACGAGTTCGCCCAGACCACCGACCAATCCTGCCTCAATCGCTTCCT
CACCGCCGCCCAGTGGGACCCCGAGACGCTCAACGATCGAAGGCTCGAGCAACTCCAGAAGGAGCCCTCCACTCGCTACAGCGTTCAGGGCGTCATCCCG
ATCGACAATACTCTCGTCGATCGGGACGGGATGCTGATTCCCGACGCCAACTGGTTCTGGGACCACACCGAAGAGCGGAACAAGATCGCCCAGGACTATC
TCTTCGTCAACTACGTCTGCACCAGCGGCAAGCACTACCCCCTGGAGTTCCGGCTCTTCCGCAAGCAAGAGGTCTGCGAAGCCTTGGACGAGCCGTTCCG
CAACCATACCGCCTTGTGCTGCGAGCTGATCGATTGGGTCTGCGAGCGGGGAATCCCCGGCGACTTCGCCATGGACTGCTACTTCACCAACGCCGAGGTC
CTCAACCACATTGATGGGAAGCAGGATCGGTTGGGACGGCCCCACGGTTACGTGGGCGATCTCAAGACCAACCGCAAGTTGGAGTGGAAGGGGGGGATCC
TCAAGGCCAACGAGTTGGCGGCGTCGATCCCGGTGGAGGACCGCAAAGCGATGAGGATCGGCGACCGTCGCCAGTGGTACTTCACGGTGACGGTCCGAAT
CCCCGGGGTGAACCACAAGGTGCGGATTGTCATCCTCTGGCACTACCGCAACGACGGGACGTGCTGCAAGATCCTGGTGACGAATCGGATTACCTGGGAG
GTGAGTCGGATCGTGCGGGTGTACCGCCATCGCTGGACAGGCACGGAGACGTTCCATCGGGACGGCAAGCAACAACTCGGGTTGGGTGACTGTCAGTTGC
GTGATGTCCAGGGTCAGACCCGGCATATGTACCTGGTCATGCTGGCGTACAGTCTGCTCATGAGCGAGTTGAAGCAGGGTCGTGCGAAGGAGTGGGCACT
CCATCGGCTGATGACCATCGGCGAGGCCTGTCGGGCGATGACGAGGGAAGCCCTGCGGACGACGCTCTCGTGGGCGATCGAGCAAGTCACGCAATTTGAG
CAACCCTATGAACATGTCGTGGCTCAGCTGGGGTTATCCTGACTTTGCAAAACACCAG
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1239 bp | 412 aa | 104 | 1342 | + | No |
Chemistry : DDE
ORF sequence :
MPGIIEFPKLVEAALTQHGDLFANECQRRHFAEYLTGLFVADRKTVLGIHDEFAQTTDQSCLNRFLTAAQWDPETLNDRRLEQLQKEPSTRYSVQGVIPI
DNTLVDRDGMLIPDANWFWDHTEERNKIAQDYLFVNYVCTSGKHYPLEFRLFRKQEVCEALDEPFRNHTALCCELIDWVCERGIPGDFAMDCYFTNAEVL
NHIDGKQDRLGRPHGYVGDLKTNRKLEWKGGILKANELAASIPVEDRKAMRIGDRRQWYFTVTVRIPGVNHKVRIVILWHYRNDGTCCKILVTNRITWEV
SRIVRVYRHRWTGTETFHRDGKQQLGLGDCQLRDVQGQTRHMYLVMLAYSLLMSELKQGRAKEWALHRLMTIGEACRAMTREALRTTLSWAIEQVTQFEQ
PYEHVVAQLGLS
DNTLVDRDGMLIPDANWFWDHTEERNKIAQDYLFVNYVCTSGKHYPLEFRLFRKQEVCEALDEPFRNHTALCCELIDWVCERGIPGDFAMDCYFTNAEVL
NHIDGKQDRLGRPHGYVGDLKTNRKLEWKGGILKANELAASIPVEDRKAMRIGDRRQWYFTVTVRIPGVNHKVRIVILWHYRNDGTCCKILVTNRITWEV
SRIVRVYRHRWTGTETFHRDGKQQLGLGDCQLRDVQGQTRHMYLVMLAYSLLMSELKQGRAKEWALHRLMTIGEACRAMTREALRTTLSWAIEQVTQFEQ
PYEHVVAQLGLS
Blast result :
Comments
ISSiac1 is 47% aa similar to ISNpe1.
References
1] ISfinder submission (2012)
2] Lucas,S., Copeland,A., Lapidus,A., Bruce,D., Goodwin,L., Pitluck,S., Peters,L., Kyrpides,N., Mavromatis,K., Detter,J.C., Han,C., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Tindall,B., Pomrenke,H.G., Brambilla,E., Klenk,H.-P. and Eisen,J.A. (2011) Direct submission GenBank.
2] Lucas,S., Copeland,A., Lapidus,A., Bruce,D., Goodwin,L., Pitluck,S., Peters,L., Kyrpides,N., Mavromatis,K., Detter,J.C., Han,C., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Tindall,B., Pomrenke,H.G., Brambilla,E., Klenk,H.-P. and Eisen,J.A. (2011) Direct submission GenBank.