ISHla10

  • Family ISH6
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_012029 ND Halorubrum lacusprofundi
Halorubrum lacusprofundi ATCC 49239 plasmid pHLAC01
Halorubrum lacusprofundi ATCC 49239
Halophilic archaeon DL31
Halophilic archaeon DL31 plasmid phalar01
DNA section
IS Length : 1444 bp

Ends


IR Length : 22/27

IRL : GGTCGTGTCGCAAAGTCCTCTAGAGTTCAGTAGTAACTGACTCCCGTGAA
IRR : GGTCGTGTTGCAAAGCGGTCTAGACTTTGCCGCTGGTACTCTCAATTGAG

Insertion site


Left flankDirect repeatRight flankDR Length
CGCCGGTTCCAAGTTCTTGAGGGGACCG8
TTGAGTCACCATAATAAATTGTCTCTTCTGGT8
TCGGGGTATCCTGATATTTTAACAATTTGGCCCCGAACGG0
GCCAGCTGGTGCAAGAAATAGATTTCTTTCCCGTATTTGT0
ACCGTTGACTGTGATTTCTTAACAATTGGAGGCCGATGTA0
CGAACTCAGGAATATGTTGTCGATCTGT8
AACCTAGAAATAAAGTTCTTTGTCGTTCAGTCGTAGACAA0
ACAGAGATATTTAAAAAATTAATTATTTGATCGTGGGCCA0
GACACTGACATCAAAACGTTGACTGCGCAAGT8
ATCGGCGTTGAAGAAGATCTGGACGCAGTCTC8
ACTCGGCTTGCCAATGATTGAATATTTTGACTCTATATCT0

DNA sequence

GGTCGTGTCGCAAAGTCCTCTAGAGTTCAGTAGTAACTGACTCCCGTGAAGGCGGGGTTGCCTCTGGTGTCCAAACCGAGGTACCCCATGCACGCCACAA
TCGACGTGCGGTTCGAACTGAGTATCGACGACGACAAAACGCTACCGCTCGCCACGCTTGCCGAGGCCGTCACTGACCAGAACCTCGAAGCAGTCCTTCT
CGAATCGCTGGTCGAGAGCCTCGACGCCGCCAGCGTCGAGGCGCTCTGTGGTGAGAAACACGCACATGGCAACGGTGACCAGCGCTTCCAACGCGCCGGC
ACCGACACCCGCACAGCTGTCACAACTGCCGGAGAACACGAGTTCTCTCTCCACTACGTCGAAGATACAGCCGCTTCCCCAGACGAATCCAGCTACTTCC
GGCCCGTCGAAGACGTTCTCGACTTCGACGGGCAGAACCGCTATCAGCAGGACATCGCCGCCAAAAGCGTCGATCTCGCTACCTCGCTCAGCTATCGAGA
CGCTGCCAATCACGGCGACAGCTTCGTCTCGATGCCGTCGCCGACCACCATCAACCGCCATGCCAAGAAATACGGCCACAAGCTCAAACAGTTCCTTCCA
GACTGTGTCGCTGGCACAGACGCTGACGCCGTCATTCCTGACGGGACAAAGTGCCACAGCCAAGACGACGACCGCTCGTCCCACTCCGTCCAAGCAACGC
TCGGCGAAGACACCGCCGAAGAGTCACGCTCCCTGCTGGATCTGTCGGTCAACGCTGACTGGGACGAAACTGCCGCCGAACTCGATGATATCGGCGCAGT
CACTGACGACGCGACGGTCGTCAGTGACGCTGATAGCGGCATCGTCACAGCCTTTACCGACGAAAACCGTGACCACCAGCTCGATCTCGTCCACGTCGGC
CGAACGCTGGGTTACACCCTCTGGGACGATGGCGTCTTCTCCTTGGACCGTCGGAAGGAGATCGTTTCGGAGGTGATCGACGAGGTGTTCCATCTGAAGA
ACTCTGTGGCGAAGCATCGTCCAGCGGAGGAGTTCGCGGCGATCCGCTCGCGGATCGCGCGAACGAGAGAGCGATTAGAGAAGACAGCGTGGCAACTGGA
GCAGTTCGGGTCAGCAAAGGCTGCAGGGTATCTTCGGCGGTGGCTGCCGTCGATTGTGACGTTCGCCGAGCACGCTGTCGAGGGGTTCGAGGTTCCGTGG
ACCTCGAACCCCGTCGAACGACTGATGGGCGAGGTCAGCAAGCGGTGCAAGAACCAGTGGATGCGCTGGACAGCAGAGGGATTGGAAGCGATACTCCAAC
TTCGGTTGGTGAAGTACGCCGACCCCGAGTACTACCAAGCGTTCCTCGACGAACTGCTCCAACGTTCGACCAAAACAGCAATCAACTGTGACCTCTCAAT
TGAGAGTACCAGCGGCAAAGTCTAGACCGCTTTGCAACACGACC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1338 bp445 aa881425+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MHATIDVRFELSIDDDKTLPLATLAEAVTDQNLEAVLLESLVESLDAASVEALCGEKHAHGNGDQRFQRAGTDTRTAVTTAGEHEFSLHYVEDTAASPDE
SSYFRPVEDVLDFDGQNRYQQDIAAKSVDLATSLSYRDAANHGDSFVSMPSPTTINRHAKKYGHKLKQFLPDCVAGTDADAVIPDGTKCHSQDDDRSSHS
VQATLGEDTAEESRSLLDLSVNADWDETAAELDDIGAVTDDATVVSDADSGIVTAFTDENRDHQLDLVHVGRTLGYTLWDDGVFSLDRRKEIVSEVIDEV
FHLKNSVAKHRPAEEFAAIRSRIARTRERLEKTAWQLEQFGSAKAAGYLRRWLPSIVTFAEHAVEGFEVPWTSNPVERLMGEVSKRCKNQWMRWTAEGLE
AILQLRLVKYADPEYYQAFLDELLQRSTKTAINCDLSIESTSGKV

 

Blast result :
Comments
ISHla10 is 93% aa similar to ISH6.
References