ISHla10
- Family ISH6
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_012029 | ND | Halorubrum lacusprofundi | Halorubrum lacusprofundi ATCC 49239 plasmid pHLAC01 Halorubrum lacusprofundi ATCC 49239 Halophilic archaeon DL31 Halophilic archaeon DL31 plasmid phalar01 |
DNA section
IS Length : 1444 bp
Ends
IR Length : 22/27
IRL : GGTCGTGTCGCAAAGTCCTCTAGAGTTCAGTAGTAACTGACTCCCGTGAA
IRR : GGTCGTGTTGCAAAGCGGTCTAGACTTTGCCGCTGGTACTCTCAATTGAG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CGCCGGTTCC | AAGTTCTT | GAGGGGACCG | 8 |
TTGAGTCACCAT | AATAAATT | GTCTCTTCTGGT | 8 |
TCGGGGTATCCTGATATTTT | AACAATTTGGCCCCGAACGG | 0 | |
GCCAGCTGGTGCAAGAAATA | GATTTCTTTCCCGTATTTGT | 0 | |
ACCGTTGACTGTGATTTCTT | AACAATTGGAGGCCGATGTA | 0 | |
CGAACTCAGG | AATATGTT | GTCGATCTGT | 8 |
AACCTAGAAATAAAGTTCTT | TGTCGTTCAGTCGTAGACAA | 0 | |
ACAGAGATATTTAAAAAATT | AATTATTTGATCGTGGGCCA | 0 | |
GACACTGACATC | AAAACGTT | GACTGCGCAAGT | 8 |
ATCGGCGTTGAA | GAAGATCT | GGACGCAGTCTC | 8 |
ACTCGGCTTGCCAATGATTG | AATATTTTGACTCTATATCT | 0 |
DNA sequence
GGTCGTGTCGCAAAGTCCTCTAGAGTTCAGTAGTAACTGACTCCCGTGAAGGCGGGGTTGCCTCTGGTGTCCAAACCGAGGTACCCCATGCACGCCACAA
TCGACGTGCGGTTCGAACTGAGTATCGACGACGACAAAACGCTACCGCTCGCCACGCTTGCCGAGGCCGTCACTGACCAGAACCTCGAAGCAGTCCTTCT
CGAATCGCTGGTCGAGAGCCTCGACGCCGCCAGCGTCGAGGCGCTCTGTGGTGAGAAACACGCACATGGCAACGGTGACCAGCGCTTCCAACGCGCCGGC
ACCGACACCCGCACAGCTGTCACAACTGCCGGAGAACACGAGTTCTCTCTCCACTACGTCGAAGATACAGCCGCTTCCCCAGACGAATCCAGCTACTTCC
GGCCCGTCGAAGACGTTCTCGACTTCGACGGGCAGAACCGCTATCAGCAGGACATCGCCGCCAAAAGCGTCGATCTCGCTACCTCGCTCAGCTATCGAGA
CGCTGCCAATCACGGCGACAGCTTCGTCTCGATGCCGTCGCCGACCACCATCAACCGCCATGCCAAGAAATACGGCCACAAGCTCAAACAGTTCCTTCCA
GACTGTGTCGCTGGCACAGACGCTGACGCCGTCATTCCTGACGGGACAAAGTGCCACAGCCAAGACGACGACCGCTCGTCCCACTCCGTCCAAGCAACGC
TCGGCGAAGACACCGCCGAAGAGTCACGCTCCCTGCTGGATCTGTCGGTCAACGCTGACTGGGACGAAACTGCCGCCGAACTCGATGATATCGGCGCAGT
CACTGACGACGCGACGGTCGTCAGTGACGCTGATAGCGGCATCGTCACAGCCTTTACCGACGAAAACCGTGACCACCAGCTCGATCTCGTCCACGTCGGC
CGAACGCTGGGTTACACCCTCTGGGACGATGGCGTCTTCTCCTTGGACCGTCGGAAGGAGATCGTTTCGGAGGTGATCGACGAGGTGTTCCATCTGAAGA
ACTCTGTGGCGAAGCATCGTCCAGCGGAGGAGTTCGCGGCGATCCGCTCGCGGATCGCGCGAACGAGAGAGCGATTAGAGAAGACAGCGTGGCAACTGGA
GCAGTTCGGGTCAGCAAAGGCTGCAGGGTATCTTCGGCGGTGGCTGCCGTCGATTGTGACGTTCGCCGAGCACGCTGTCGAGGGGTTCGAGGTTCCGTGG
ACCTCGAACCCCGTCGAACGACTGATGGGCGAGGTCAGCAAGCGGTGCAAGAACCAGTGGATGCGCTGGACAGCAGAGGGATTGGAAGCGATACTCCAAC
TTCGGTTGGTGAAGTACGCCGACCCCGAGTACTACCAAGCGTTCCTCGACGAACTGCTCCAACGTTCGACCAAAACAGCAATCAACTGTGACCTCTCAAT
TGAGAGTACCAGCGGCAAAGTCTAGACCGCTTTGCAACACGACC
TCGACGTGCGGTTCGAACTGAGTATCGACGACGACAAAACGCTACCGCTCGCCACGCTTGCCGAGGCCGTCACTGACCAGAACCTCGAAGCAGTCCTTCT
CGAATCGCTGGTCGAGAGCCTCGACGCCGCCAGCGTCGAGGCGCTCTGTGGTGAGAAACACGCACATGGCAACGGTGACCAGCGCTTCCAACGCGCCGGC
ACCGACACCCGCACAGCTGTCACAACTGCCGGAGAACACGAGTTCTCTCTCCACTACGTCGAAGATACAGCCGCTTCCCCAGACGAATCCAGCTACTTCC
GGCCCGTCGAAGACGTTCTCGACTTCGACGGGCAGAACCGCTATCAGCAGGACATCGCCGCCAAAAGCGTCGATCTCGCTACCTCGCTCAGCTATCGAGA
CGCTGCCAATCACGGCGACAGCTTCGTCTCGATGCCGTCGCCGACCACCATCAACCGCCATGCCAAGAAATACGGCCACAAGCTCAAACAGTTCCTTCCA
GACTGTGTCGCTGGCACAGACGCTGACGCCGTCATTCCTGACGGGACAAAGTGCCACAGCCAAGACGACGACCGCTCGTCCCACTCCGTCCAAGCAACGC
TCGGCGAAGACACCGCCGAAGAGTCACGCTCCCTGCTGGATCTGTCGGTCAACGCTGACTGGGACGAAACTGCCGCCGAACTCGATGATATCGGCGCAGT
CACTGACGACGCGACGGTCGTCAGTGACGCTGATAGCGGCATCGTCACAGCCTTTACCGACGAAAACCGTGACCACCAGCTCGATCTCGTCCACGTCGGC
CGAACGCTGGGTTACACCCTCTGGGACGATGGCGTCTTCTCCTTGGACCGTCGGAAGGAGATCGTTTCGGAGGTGATCGACGAGGTGTTCCATCTGAAGA
ACTCTGTGGCGAAGCATCGTCCAGCGGAGGAGTTCGCGGCGATCCGCTCGCGGATCGCGCGAACGAGAGAGCGATTAGAGAAGACAGCGTGGCAACTGGA
GCAGTTCGGGTCAGCAAAGGCTGCAGGGTATCTTCGGCGGTGGCTGCCGTCGATTGTGACGTTCGCCGAGCACGCTGTCGAGGGGTTCGAGGTTCCGTGG
ACCTCGAACCCCGTCGAACGACTGATGGGCGAGGTCAGCAAGCGGTGCAAGAACCAGTGGATGCGCTGGACAGCAGAGGGATTGGAAGCGATACTCCAAC
TTCGGTTGGTGAAGTACGCCGACCCCGAGTACTACCAAGCGTTCCTCGACGAACTGCTCCAACGTTCGACCAAAACAGCAATCAACTGTGACCTCTCAAT
TGAGAGTACCAGCGGCAAAGTCTAGACCGCTTTGCAACACGACC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1338 bp | 445 aa | 88 | 1425 | + | No |
Chemistry : DDE
ORF sequence :
MHATIDVRFELSIDDDKTLPLATLAEAVTDQNLEAVLLESLVESLDAASVEALCGEKHAHGNGDQRFQRAGTDTRTAVTTAGEHEFSLHYVEDTAASPDE
SSYFRPVEDVLDFDGQNRYQQDIAAKSVDLATSLSYRDAANHGDSFVSMPSPTTINRHAKKYGHKLKQFLPDCVAGTDADAVIPDGTKCHSQDDDRSSHS
VQATLGEDTAEESRSLLDLSVNADWDETAAELDDIGAVTDDATVVSDADSGIVTAFTDENRDHQLDLVHVGRTLGYTLWDDGVFSLDRRKEIVSEVIDEV
FHLKNSVAKHRPAEEFAAIRSRIARTRERLEKTAWQLEQFGSAKAAGYLRRWLPSIVTFAEHAVEGFEVPWTSNPVERLMGEVSKRCKNQWMRWTAEGLE
AILQLRLVKYADPEYYQAFLDELLQRSTKTAINCDLSIESTSGKV
SSYFRPVEDVLDFDGQNRYQQDIAAKSVDLATSLSYRDAANHGDSFVSMPSPTTINRHAKKYGHKLKQFLPDCVAGTDADAVIPDGTKCHSQDDDRSSHS
VQATLGEDTAEESRSLLDLSVNADWDETAAELDDIGAVTDDATVVSDADSGIVTAFTDENRDHQLDLVHVGRTLGYTLWDDGVFSLDRRKEIVSEVIDEV
FHLKNSVAKHRPAEEFAAIRSRIARTRERLEKTAWQLEQFGSAKAAGYLRRWLPSIVTFAEHAVEGFEVPWTSNPVERLMGEVSKRCKNQWMRWTAEGLE
AILQLRLVKYADPEYYQAFLDELLQRSTKTAINCDLSIESTSGKV
Blast result :
Comments
ISHla10 is 93% aa similar to ISH6.
References