ISSco3
- Family IS5
- Group IS1031
Isoform Synonym(s) ISStco1
Accession number | Transposition | Origin | Host |
---|---|---|---|
AB024596 | ND | Streptomyces coelicolor | Streptomyces coelicolor M145 |
DNA section
IS Length : 1101 bp
Ends
IR Length : 11
IRL : AGAGGGCGTTTATGCAGTTCAAAGCAGGTAAGCGGCTTATGCGAGTGCCC
IRR : AGAGGGCGTTTGATCTAGTCAGATTGCCCTTTATCTCCTAGTAAGTTCCT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|
DNA sequence
AGAGGGCGTTTATGCAGTTCAAAGCAGGTAAGCGGCTTATGCGAGTGCCCCGTTTCAGCATGGTTCACCCCGTAGGTTCCGAATGCCGCCCGGCCAGGCA
CGACCCCCGTCGCCCGTCTCATCCACTTCTGCTCTAGGAAACCCGTCTGACGTAGAGATATGGCAGAACCTCCCACCCTCCTGCGGAACGGAGCCTTCCG
GCATGCCCATGCTCACGCTGTGCCGTGAGTGAGCGCAAGCCGTACCCCAGCGACCTGTCCGACGCCCGATGGGCCCTGATCGAGCCGACGTTGACGGCCT
GGCGGAATGCCCGGCTCGAACGCCGTCCCACCGGAAAACCGGCCCAAGTCGATTTGCGCGACGTGTTCAATGCGATCCTCTACCTGAACCGCACCGGAAT
CCCCTGGAAATACCTCCCACACGATTTCCCCGGCCACGGCACCGTCTACTTCTACTACGCCGCCTGGCGCGACGAAGGAATCTTCACCCAACTCAACTAC
GACCTGACCGCGCTCGCCCGCGTGAAGGAGGGTCGCAAGCCCGAACCGACCGCCTCGGTCATCGACACCCAGAGCGTCAAGACCTCCACCAACGTGCCCC
TGACCAGCCAGGGAACCGACGCCGCGAAAAAGATCGTCGGCCGGAAGCGCGGCATCCTCACCGACACGATCGGCCTCATCCTCGCCGTGACCGTCACCGG
TGCCGGCCTCTCCGAAAACGCCGTGGGAATACGCCTCCTCGACCAGGCCAAGAGGACATACCCCACCATCGTGAAAAGCTGGGTCGACACCGGCTTCAAA
AATGCCGTAATCGAACACGGCGCCACCCTGGGCATCGACGTCGAGGTCGTCAACCGCAACCCCGAAAAACGCGGCTTCCATGTCGTGAAAAGGCGCTGGG
TGGTAGAGCGCAGCATCGGCTGGATCATGATGCACCGCCGCCTCGCGCGCGACTACGAGACCCTCACCACCAGCTCCGAAGCCATGATCCACATCGCATC
GATCGACAACCTCGCCAAGCGCATAACGGACGAGACCACACCCACCTGGCGAGGAACTTACTAGGAGATAAAGGGCAATCTGACTAGATCAAACGCCCTC
T
CGACCCCCGTCGCCCGTCTCATCCACTTCTGCTCTAGGAAACCCGTCTGACGTAGAGATATGGCAGAACCTCCCACCCTCCTGCGGAACGGAGCCTTCCG
GCATGCCCATGCTCACGCTGTGCCGTGAGTGAGCGCAAGCCGTACCCCAGCGACCTGTCCGACGCCCGATGGGCCCTGATCGAGCCGACGTTGACGGCCT
GGCGGAATGCCCGGCTCGAACGCCGTCCCACCGGAAAACCGGCCCAAGTCGATTTGCGCGACGTGTTCAATGCGATCCTCTACCTGAACCGCACCGGAAT
CCCCTGGAAATACCTCCCACACGATTTCCCCGGCCACGGCACCGTCTACTTCTACTACGCCGCCTGGCGCGACGAAGGAATCTTCACCCAACTCAACTAC
GACCTGACCGCGCTCGCCCGCGTGAAGGAGGGTCGCAAGCCCGAACCGACCGCCTCGGTCATCGACACCCAGAGCGTCAAGACCTCCACCAACGTGCCCC
TGACCAGCCAGGGAACCGACGCCGCGAAAAAGATCGTCGGCCGGAAGCGCGGCATCCTCACCGACACGATCGGCCTCATCCTCGCCGTGACCGTCACCGG
TGCCGGCCTCTCCGAAAACGCCGTGGGAATACGCCTCCTCGACCAGGCCAAGAGGACATACCCCACCATCGTGAAAAGCTGGGTCGACACCGGCTTCAAA
AATGCCGTAATCGAACACGGCGCCACCCTGGGCATCGACGTCGAGGTCGTCAACCGCAACCCCGAAAAACGCGGCTTCCATGTCGTGAAAAGGCGCTGGG
TGGTAGAGCGCAGCATCGGCTGGATCATGATGCACCGCCGCCTCGCGCGCGACTACGAGACCCTCACCACCAGCTCCGAAGCCATGATCCACATCGCATC
GATCGACAACCTCGCCAAGCGCATAACGGACGAGACCACACCCACCTGGCGAGGAACTTACTAGGAGATAAAGGGCAATCTGACTAGATCAAACGCCCTC
T
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
840 bp | 279 aa | 225 | 1064 | + | No |
Chemistry : DDE
ORF sequence :
MSERKPYPSDLSDARWALIEPTLTAWRNARLERRPTGKPAQVDLRDVFNAILYLNRTGIPWKYLPHDFPGHGTVYFYYAAWRDEGIFTQLNYDLTALARV
KEGRKPEPTASVIDTQSVKTSTNVPLTSQGTDAAKKIVGRKRGILTDTIGLILAVTVTGAGLSENAVGIRLLDQAKRTYPTIVKSWVDTGFKNAVIEHGA
TLGIDVEVVNRNPEKRGFHVVKRRWVVERSIGWIMMHRRLARDYETLTTSSEAMIHIASIDNLAKRITDETTPTWRGTY
KEGRKPEPTASVIDTQSVKTSTNVPLTSQGTDAAKKIVGRKRGILTDTIGLILAVTVTGAGLSENAVGIRLLDQAKRTYPTIVKSWVDTGFKNAVIEHGA
TLGIDVEVVNRNPEKRGFHVVKRRWVVERSIGWIMMHRRLARDYETLTTSSEAMIHIASIDNLAKRITDETTPTWRGTY
Blast result :
Comments
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References
1] Kinashi, H. and Yamasaki, M.(1999) Direct submission Genbank.