ISSco3

  • Family IS5
  • Group IS1031
MGE type ISRelated element(s) :
Isoform Synonym(s) ISStco1
Accession numberTranspositionOriginHost
AB024596 ND Streptomyces coelicolor
Streptomyces coelicolor M145
DNA section
IS Length : 1101 bp

Ends


IR Length : 11

IRL : AGAGGGCGTTTATGCAGTTCAAAGCAGGTAAGCGGCTTATGCGAGTGCCC
IRR : AGAGGGCGTTTGATCTAGTCAGATTGCCCTTTATCTCCTAGTAAGTTCCT

Insertion site


Left flankDirect repeatRight flankDR Length

DNA sequence

AGAGGGCGTTTATGCAGTTCAAAGCAGGTAAGCGGCTTATGCGAGTGCCCCGTTTCAGCATGGTTCACCCCGTAGGTTCCGAATGCCGCCCGGCCAGGCA
CGACCCCCGTCGCCCGTCTCATCCACTTCTGCTCTAGGAAACCCGTCTGACGTAGAGATATGGCAGAACCTCCCACCCTCCTGCGGAACGGAGCCTTCCG
GCATGCCCATGCTCACGCTGTGCCGTGAGTGAGCGCAAGCCGTACCCCAGCGACCTGTCCGACGCCCGATGGGCCCTGATCGAGCCGACGTTGACGGCCT
GGCGGAATGCCCGGCTCGAACGCCGTCCCACCGGAAAACCGGCCCAAGTCGATTTGCGCGACGTGTTCAATGCGATCCTCTACCTGAACCGCACCGGAAT
CCCCTGGAAATACCTCCCACACGATTTCCCCGGCCACGGCACCGTCTACTTCTACTACGCCGCCTGGCGCGACGAAGGAATCTTCACCCAACTCAACTAC
GACCTGACCGCGCTCGCCCGCGTGAAGGAGGGTCGCAAGCCCGAACCGACCGCCTCGGTCATCGACACCCAGAGCGTCAAGACCTCCACCAACGTGCCCC
TGACCAGCCAGGGAACCGACGCCGCGAAAAAGATCGTCGGCCGGAAGCGCGGCATCCTCACCGACACGATCGGCCTCATCCTCGCCGTGACCGTCACCGG
TGCCGGCCTCTCCGAAAACGCCGTGGGAATACGCCTCCTCGACCAGGCCAAGAGGACATACCCCACCATCGTGAAAAGCTGGGTCGACACCGGCTTCAAA
AATGCCGTAATCGAACACGGCGCCACCCTGGGCATCGACGTCGAGGTCGTCAACCGCAACCCCGAAAAACGCGGCTTCCATGTCGTGAAAAGGCGCTGGG
TGGTAGAGCGCAGCATCGGCTGGATCATGATGCACCGCCGCCTCGCGCGCGACTACGAGACCCTCACCACCAGCTCCGAAGCCATGATCCACATCGCATC
GATCGACAACCTCGCCAAGCGCATAACGGACGAGACCACACCCACCTGGCGAGGAACTTACTAGGAGATAAAGGGCAATCTGACTAGATCAAACGCCCTC
T
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
840 bp279 aa2251064+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSERKPYPSDLSDARWALIEPTLTAWRNARLERRPTGKPAQVDLRDVFNAILYLNRTGIPWKYLPHDFPGHGTVYFYYAAWRDEGIFTQLNYDLTALARV
KEGRKPEPTASVIDTQSVKTSTNVPLTSQGTDAAKKIVGRKRGILTDTIGLILAVTVTGAGLSENAVGIRLLDQAKRTYPTIVKSWVDTGFKNAVIEHGA
TLGIDVEVVNRNPEKRGFHVVKRRWVVERSIGWIMMHRRLARDYETLTTSSEAMIHIASIDNLAKRITDETTPTWRGTY

 

Blast result :
Comments
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References
1] Kinashi, H. and Yamasaki, M.(1999) Direct submission Genbank.