ISS1Z

  • Family IS6
  • Group
MGE type ISRelated element(s) :
Isoform ISS1SSynonym(s)
Accession numberTranspositionOriginHost
M85192 Y Lactococcus lactis
Lactococcus lactis subsp. lactis OZS1 plasmid pOZS550
DNA section
IS Length : 808 bp

Ends


IR Length : 18

IRL : GGTTCTGTTGCAAAGTTTTCGGGTAAGTCTATTTTAGTGCAAGATGAATA
IRR : GGTTCTGTTGCAAAGTTTAAAAATCAAATACAAGGTTTATAATCCTTCTG

Insertion site


Left flankDirect repeatRight flankDR Length

DNA sequence

GGTTCTGTTGCAAAGTTTTCGGGTAAGTCTATTTTAGTGCAAGATGAATAAAAATGACAGCGAGGATATATCAATGAACTATTTTAAAGGTAAACAATTT
CAAAAAGATGTGATTATTGTCGCTGTTGGTTATTATCTACGTTACAATCTAAGCTATCGTGAAATTCAAGAACTCCTTTATGATCGTGGGATTAACGTTT
GTCACACAACTATTTATCGTTGGGTACAAGAATACAGCAAAGTCCTCTATCATCTCTGGAAAAAGAAAAATAGACAGTCCTTCTATTCGTGGAAAATGGA
TGAAACTTATATCAAGATCAAAGGTCGTTGGCATTATCTCTATCGTGCAATTGATGCGGATGGATTGACTTTAGACATCTGGCTACGCAAGAAACGGAAT
ACGCAAGCTGCTTATGCGTTCTTGAAACGACTACATAAACAGTTTGGTCAACCAAGAGTAATTGTCACGGATAAAGCGCCCTCTATTGGTTCTGCATTTC
GAAAGTTACAGAGTAACGGTCTATATACTAAGACAGAGCATCGAACCGTGAAGTATCTCAATAACCTCATTGAGCAAGACCATCGACCAATCAAACGACG
CAATAAATTTTATCGAAGTCTACGAACTGCCTCAACTACGGTTAAGGGCATGGAAACAATTCGAGGAATATACAAAAAGAACCGAAGAAATGGAACGCTC
TTCGGATTTTCGGTATCTACTGAGATTAAGGTCTTAATGGGAATATTAGCTTAAGATCCAGAAGGATTATAAACCTTGTATTTGATTTTTAAACTTTGCA
ACAGAACC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
681 bp226 aa74754+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MNYFKGKQFQKDVIIVAVGYYLRYNLSYREIQELLYDRGINVCHTTIYRWVQEYSKVLYHLWKKKNRQSFYSWKMDETYIKIKGRWHYLYRAIDADGLTL
DIWLRKKRNTQAAYAFLKRLHKQFGQPRVIVTDKAPSIGSAFRKLQSNGLYTKTEHRTVKYLNNLIEQDHRPIKRRNKFYRSLRTASTTVKGMETIRGIY
KKNRRNGTLFGFSVSTEIKVLMGILA

 

Blast result :
Comments
ISS1Z differs from ISS1S by 11 bp (1 aa).
References
1] Smigielski, A.J. (1990) Arch. Microbiol. 154, 560-565.