ISS1Z
- Family IS6
- Group
Isoform ISS1SSynonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
M85192 | Y | Lactococcus lactis | Lactococcus lactis subsp. lactis OZS1 plasmid pOZS550 |
DNA section
IS Length : 808 bp
Ends
IR Length : 18
IRL : GGTTCTGTTGCAAAGTTTTCGGGTAAGTCTATTTTAGTGCAAGATGAATA
IRR : GGTTCTGTTGCAAAGTTTAAAAATCAAATACAAGGTTTATAATCCTTCTG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|
DNA sequence
GGTTCTGTTGCAAAGTTTTCGGGTAAGTCTATTTTAGTGCAAGATGAATAAAAATGACAGCGAGGATATATCAATGAACTATTTTAAAGGTAAACAATTT
CAAAAAGATGTGATTATTGTCGCTGTTGGTTATTATCTACGTTACAATCTAAGCTATCGTGAAATTCAAGAACTCCTTTATGATCGTGGGATTAACGTTT
GTCACACAACTATTTATCGTTGGGTACAAGAATACAGCAAAGTCCTCTATCATCTCTGGAAAAAGAAAAATAGACAGTCCTTCTATTCGTGGAAAATGGA
TGAAACTTATATCAAGATCAAAGGTCGTTGGCATTATCTCTATCGTGCAATTGATGCGGATGGATTGACTTTAGACATCTGGCTACGCAAGAAACGGAAT
ACGCAAGCTGCTTATGCGTTCTTGAAACGACTACATAAACAGTTTGGTCAACCAAGAGTAATTGTCACGGATAAAGCGCCCTCTATTGGTTCTGCATTTC
GAAAGTTACAGAGTAACGGTCTATATACTAAGACAGAGCATCGAACCGTGAAGTATCTCAATAACCTCATTGAGCAAGACCATCGACCAATCAAACGACG
CAATAAATTTTATCGAAGTCTACGAACTGCCTCAACTACGGTTAAGGGCATGGAAACAATTCGAGGAATATACAAAAAGAACCGAAGAAATGGAACGCTC
TTCGGATTTTCGGTATCTACTGAGATTAAGGTCTTAATGGGAATATTAGCTTAAGATCCAGAAGGATTATAAACCTTGTATTTGATTTTTAAACTTTGCA
ACAGAACC
CAAAAAGATGTGATTATTGTCGCTGTTGGTTATTATCTACGTTACAATCTAAGCTATCGTGAAATTCAAGAACTCCTTTATGATCGTGGGATTAACGTTT
GTCACACAACTATTTATCGTTGGGTACAAGAATACAGCAAAGTCCTCTATCATCTCTGGAAAAAGAAAAATAGACAGTCCTTCTATTCGTGGAAAATGGA
TGAAACTTATATCAAGATCAAAGGTCGTTGGCATTATCTCTATCGTGCAATTGATGCGGATGGATTGACTTTAGACATCTGGCTACGCAAGAAACGGAAT
ACGCAAGCTGCTTATGCGTTCTTGAAACGACTACATAAACAGTTTGGTCAACCAAGAGTAATTGTCACGGATAAAGCGCCCTCTATTGGTTCTGCATTTC
GAAAGTTACAGAGTAACGGTCTATATACTAAGACAGAGCATCGAACCGTGAAGTATCTCAATAACCTCATTGAGCAAGACCATCGACCAATCAAACGACG
CAATAAATTTTATCGAAGTCTACGAACTGCCTCAACTACGGTTAAGGGCATGGAAACAATTCGAGGAATATACAAAAAGAACCGAAGAAATGGAACGCTC
TTCGGATTTTCGGTATCTACTGAGATTAAGGTCTTAATGGGAATATTAGCTTAAGATCCAGAAGGATTATAAACCTTGTATTTGATTTTTAAACTTTGCA
ACAGAACC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
681 bp | 226 aa | 74 | 754 | + | No |
Chemistry : DDE
ORF sequence :
MNYFKGKQFQKDVIIVAVGYYLRYNLSYREIQELLYDRGINVCHTTIYRWVQEYSKVLYHLWKKKNRQSFYSWKMDETYIKIKGRWHYLYRAIDADGLTL
DIWLRKKRNTQAAYAFLKRLHKQFGQPRVIVTDKAPSIGSAFRKLQSNGLYTKTEHRTVKYLNNLIEQDHRPIKRRNKFYRSLRTASTTVKGMETIRGIY
KKNRRNGTLFGFSVSTEIKVLMGILA
DIWLRKKRNTQAAYAFLKRLHKQFGQPRVIVTDKAPSIGSAFRKLQSNGLYTKTEHRTVKYLNNLIEQDHRPIKRRNKFYRSLRTASTTVKGMETIRGIY
KKNRRNGTLFGFSVSTEIKVLMGILA
Blast result :
Comments
ISS1Z differs from ISS1S by 11 bp (1 aa).
References
1] Smigielski, A.J. (1990) Arch. Microbiol. 154, 560-565.