ISS1X
- Family IS6
- Group
Isoform ISS1SSynonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
M77708 | ND | Lactococcus lactis | Lactococcus lactis subsp. lactis IL416 |
DNA section
IS Length : 808 bp
Ends
IR Length : 18
IRL : GGTTCTGTTGCAAAGTTTAAAAATCAAATACAAGGTTTATAATCCTTCTT
IRR : GGTTCTGTTGCAAAGTTTTCTGATAAGTCTATTTTAGTGTAAAATGAATA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|
DNA sequence
GGTTCTGTTGCAAAGTTTAAAAATCAAATACAAGGTTTATAATCCTTCTTGTTCTTAAGCTAATATTCCCATTAAGACCTTAATCTCAGTAGATACCGAA
AATCCGAAGAGCGTTCCATTTCTTCGGTTCTTTTTGTATATTCCTCGAATTGTTTCCATGCCCTTAATCGTGGTTGAGGCAGTTCGTAGACTTCGATAAA
ATTTATTGCGTCGTTTGATTGGTCGATGGTCTTGCTCAATGAGGTTATTGAGATACTTCACGGTTCGATGCTCTGTCTTAGTATATAAACCGTTACTCTG
TAACTTTCTAAATGCAGAACCAATAGAGGGCGCTTTATCCGTGACAATTACTCTTGGTTGACCAAACTGTTTATGTAGTCGTTTCAAGAACGCATAAGCA
GCTTGAGTATCCCGTTTCTTGCGTAGCCAGATGTCTAAAGTCAATCCATCCTCATCAATTGCACGATAGAGATAATGCCAACGACCTTTGATTTTGATAT
AAGTTTCATCCATTTTCCACGAATAGAAGGACTGTCTATTTTTCTTTTTCCAGAGATGATAGAGGACTTTACTGTATTCTTGTACCCAACGATAAATAGT
TGTGTGACAAACGTTAATCCCACGATCATAAAGGAGTTCTTGAATTTCACGATAGCTTAGATTGTAACGTAGATAATAACCAACAGCGACAATAATCACA
TCTTTTTGAAATTGTTTACCTTTAAAATAGTTCATTGATATATCCTCGCTGTCATTTTTATTCATTTTACACTAAAATAGACTTATCAGAAAACTTTGCA
ACAGAACC
AATCCGAAGAGCGTTCCATTTCTTCGGTTCTTTTTGTATATTCCTCGAATTGTTTCCATGCCCTTAATCGTGGTTGAGGCAGTTCGTAGACTTCGATAAA
ATTTATTGCGTCGTTTGATTGGTCGATGGTCTTGCTCAATGAGGTTATTGAGATACTTCACGGTTCGATGCTCTGTCTTAGTATATAAACCGTTACTCTG
TAACTTTCTAAATGCAGAACCAATAGAGGGCGCTTTATCCGTGACAATTACTCTTGGTTGACCAAACTGTTTATGTAGTCGTTTCAAGAACGCATAAGCA
GCTTGAGTATCCCGTTTCTTGCGTAGCCAGATGTCTAAAGTCAATCCATCCTCATCAATTGCACGATAGAGATAATGCCAACGACCTTTGATTTTGATAT
AAGTTTCATCCATTTTCCACGAATAGAAGGACTGTCTATTTTTCTTTTTCCAGAGATGATAGAGGACTTTACTGTATTCTTGTACCCAACGATAAATAGT
TGTGTGACAAACGTTAATCCCACGATCATAAAGGAGTTCTTGAATTTCACGATAGCTTAGATTGTAACGTAGATAATAACCAACAGCGACAATAATCACA
TCTTTTTGAAATTGTTTACCTTTAAAATAGTTCATTGATATATCCTCGCTGTCATTTTTATTCATTTTACACTAAAATAGACTTATCAGAAAACTTTGCA
ACAGAACC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
681 bp | 226 aa | 74 | 754 | + | No |
Chemistry : DDE
ORF sequence :
MNYFKGKQFQKDVIIVAVGYYLRYNLSYREIQELLYDRGINVCHTTIYRWVQEYSKVLYHLWKKKNRQSFYSWKMDETYIKIKGRWHYLYRAIDEDGLTL
DIWLRKKRDTQAAYAFLKRLHKQFGQPRVIVTDKAPSIGSAFRKLQSNGLYTKTEHRTVKYLNNLIEQDHRPIKRRNKFYRSLRTASTTIKGMETIRGIY
KKNRRNGTLFGFSVSTEIKVLMGILA
DIWLRKKRDTQAAYAFLKRLHKQFGQPRVIVTDKAPSIGSAFRKLQSNGLYTKTEHRTVKYLNNLIEQDHRPIKRRNKFYRSLRTASTTIKGMETIRGIY
KKNRRNGTLFGFSVSTEIKVLMGILA
Blast result :
Comments
ISS1X is associated with the phage abortive infection (abi) gene. ISS1X is 99.5 % identical to ISS1S.
Additionnal accession number : AF242367 , this sequence is 99% aa similar to the sequence of the database (mutations at positions 96 E -> A and 205 R -> T).
Additionnal accession number : AF242367 , this sequence is 99% aa similar to the sequence of the database (mutations at positions 96 E -> A and 205 R -> T).
References
1] Cluzel, P.-J., Chopin, A., Ehrlich, S.D., and Chopin, M.-C. (1991) Appl. Environ. Microbiol. 57, 3547-3551.
2] Sanchez,C., Hernandez de Rojas,A., Martinez,B., Arguelles,M.E., Suarez,J.E., Rodriguez,A. and Mayo,B. (2000) Plasmid. 44 (3), 239-249.
2] Sanchez,C., Hernandez de Rojas,A., Martinez,B., Arguelles,M.E., Suarez,J.E., Rodriguez,A. and Mayo,B. (2000) Plasmid. 44 (3), 239-249.