ISS1T

  • Family IS6
  • Group
MGE type ISRelated element(s) :
Isoform ISS1SSynonym(s) SK13
Accession numberTranspositionOriginHost
Z14022 Y Lactococcus lactis
Lactococcus lactis subsp. lactis ML3 plasmid pSK08
Lactococcus lactis subsp. lactis 712
DNA section
IS Length : 808 bp

Ends


IR Length : 18

IRL : GGTTCTGTTGCAAAGTTTTCTGATAAGTCTATTTTAGTGTAAAAGTAATA
IRR : GGTTCTGTTGCAAAGTTTAAAAATCAAATACAAGGTTTATAATCCTTCTT

Insertion site


Left flankDirect repeatRight flankDR Length

DNA sequence

GGTTCTGTTGCAAAGTTTTCTGATAAGTCTATTTTAGTGTAAAAGTAATAAAAATGACAGCGAGGATATATCAATGAACTATTTTAAAGGTAAACAATTT
CAAAAAGATGTGATTATTGTCGCTGTTGGTTATTATCTACGTTACAATCTAAGCTATCGTGAAATTCAAGAACTCCTTTATGATCGTGGAATAAATGTTT
GTCACACAACTATTTATCGTTGGGTACAAGAATACAGTAAAGTCCTCTATCATCTCTGGAAAAAGAAAAATAGACAGTCCTTCTATTCGTGGAAAATGGA
TGAAACTTATATCAAAATCAAAGGTCGTTGGCATTATCTCTATCGTGCAATTGATGCGGATGGATTGACTTTAGACATCTGGCTACGCAAGAAACGGAAT
ACGCAAGCTGCTTATGCGTTCTTGAAACGACTACATAAACAGTTTGGTCAACCAAGAGTAATTGTCACGGATAAAGCGCCCTCTATTGGTTCTGCATTTA
GAAAGTTACAGAGTAACGGTTTATATACTAAGACAGAGCATCGAACCGTGAAGTATCTCAATAACCTCATTGAGCAAGACCATCGACCAATCAAACGACG
CAATAAATTTTATCGAAGTCTACGAACTGCCTCAACCACGATTAAGGGCATGGAAACAATTCGAGGAATATACAAAAAGAACCGAAGAAATGGAACGCTC
TTCGGATTTTCGGTATCTACTGAGATTAAGGTCTTAATGGGAATATTAGCTTAAGAACAAGAAGGATTATAAACCTTGTATTTGATTTTTAAACTTTGCA
ACAGAACC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
681 bp226 aa74754+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MNYFKGKQFQKDVIIVAVGYYLRYNLSYREIQELLYDRGINVCHTTIYRWVQEYSKVLYHLWKKKNRQSFYSWKMDETYIKIKGRWHYLYRAIDADGLTL
DIWLRKKRNTQAAYAFLKRLHKQFGQPRVIVTDKAPSIGSAFRKLQSNGLYTKTEHRTVKYLNNLIEQDHRPIKRRNKFYRSLRTASTTIKGMETIRGIY
KKNRRNGTLFGFSVSTEIKVLMGILA

 

Blast result :
Comments
ISS1T differs from ISS1S and IS946 by 4 and 31 bp, respectively.
References
1] Polzin, K.M., and Shimizu-Kadota (1987) J. Bacteriol. 169, 5481-5488.
2] Gasson, M.J., Swindell, S., Maeda, S., and Dodd, H.M. (1992) Mol. Microbiol. 6, 3213-3223.