ISS1N
- Family IS6
- Group
Isoform Synonym(s) ORF-N1
Accession number | Transposition | Origin | Host |
---|---|---|---|
M37395 | ND | Lactococcus lactis | Lactococcus lactis subsp. cremoris SK11 plasmid pSK111 Lactococcus lactis subsp. lactis MG1363 |
DNA section
IS Length : 808 bp
Ends
IR Length : 18
IRL : GGTTCTGTTGCAAAGTTTTCCAAAAAATCTATTTTAGTGTAAAATTGAGA
IRR : GGTTCTGTTGCAAAGTTTGAAAATCAAACGCGCCCTCTCTGAACTCCAAA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|
DNA sequence
GGTTCTGTTGCAAAGTTTTCCAAAAAATCTATTTTAGTGTAAAATTGAGAAAAAAGACAGAGAGGACAGAGTAATGAATCGTTTTAAAGGCAAACAATTC
AAAAAAGACGTCATTATTGTCGCTGTTGGTTACTACGTGCGTTACAATCTAAGCTATCGTGAAGTTCAGGAATTGTTATATGATCGTGGAATAAATGTTT
GTCATACTACGATTTATCGTTGGGTGCAAGAGTACAGCAAAGTCCTCTATGATCTTTGGAAGAAGAAAAATAGACAATCCTTCTATTCATGGAAAATGGA
CGAAACCTATATCAAAATTAAGGGACGTTGGCATTATCTTTATCGTGCAATTGATGCGGACGGCTTAACCTTAGATATCTGGTTACGAAAGAAACGGGAG
ACGCAAGCAGCCTATGCTTTCTTAAAACGACTCCATAAACAGTTTGGTGAGCCGAAAGCAATTGTGACCGATAAAGCACCTTCTCTTGGCTCCGCCTTTA
TAAAGTTACAGAGTGTGGGTTTATATACTAAGACAGAGCACCGAACTGTGAAGTATCTTAACAATTTAATAGAACAAGACCATAGACCTATTAAACGACG
GAATAAATTTTATCAAAGTCTCCGTACAGCCTCTTCCACGATTAAGGGCATGGAGACCCTTCGAGGAATATATAAAAAGAACCGAAGAAATGGAACGCTC
TTCGGCTTTTCGGTGTCTACTGAAATCAAGGTATTAATGGGAATAACAGCCTAAGATATTTGGAGTTCAGAGAGGGCGCGTTTGATTTTCAAACTTTGCA
ACAGAACC
AAAAAAGACGTCATTATTGTCGCTGTTGGTTACTACGTGCGTTACAATCTAAGCTATCGTGAAGTTCAGGAATTGTTATATGATCGTGGAATAAATGTTT
GTCATACTACGATTTATCGTTGGGTGCAAGAGTACAGCAAAGTCCTCTATGATCTTTGGAAGAAGAAAAATAGACAATCCTTCTATTCATGGAAAATGGA
CGAAACCTATATCAAAATTAAGGGACGTTGGCATTATCTTTATCGTGCAATTGATGCGGACGGCTTAACCTTAGATATCTGGTTACGAAAGAAACGGGAG
ACGCAAGCAGCCTATGCTTTCTTAAAACGACTCCATAAACAGTTTGGTGAGCCGAAAGCAATTGTGACCGATAAAGCACCTTCTCTTGGCTCCGCCTTTA
TAAAGTTACAGAGTGTGGGTTTATATACTAAGACAGAGCACCGAACTGTGAAGTATCTTAACAATTTAATAGAACAAGACCATAGACCTATTAAACGACG
GAATAAATTTTATCAAAGTCTCCGTACAGCCTCTTCCACGATTAAGGGCATGGAGACCCTTCGAGGAATATATAAAAAGAACCGAAGAAATGGAACGCTC
TTCGGCTTTTCGGTGTCTACTGAAATCAAGGTATTAATGGGAATAACAGCCTAAGATATTTGGAGTTCAGAGAGGGCGCGTTTGATTTTCAAACTTTGCA
ACAGAACC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
681 bp | 226 aa | 74 | 754 | + | No |
Chemistry : DDE
ORF sequence :
MNRFKGKQFKKDVIIVAVGYYVRYNLSYREVQELLYDRGINVCHTTIYRWVQEYSKVLYDLWKKKNRQSFYSWKMDETYIKIKGRWHYLYRAIDADGLTL
DIWLRKKRETQAAYAFLKRLHKQFGEPKAIVTDKAPSLGSAFIKLQSVGLYTKTEHRTVKYLNNLIEQDHRPIKRRNKFYQSLRTASSTIKGMETLRGIY
KKNRRNGTLFGFSVSTEIKVLMGITA
DIWLRKKRETQAAYAFLKRLHKQFGEPKAIVTDKAPSLGSAFIKLQSVGLYTKTEHRTVKYLNNLIEQDHRPIKRRNKFYQSLRTASSTIKGMETLRGIY
KKNRRNGTLFGFSVSTEIKVLMGITA
Blast result :
Comments
ISS1N is located downstream of the proteinase maturation gene (prtM). ISS1W and ISS1N ORFs are 86 and 93 % identical to that of ISS1S, respectively.
References
1] Haandrikman, A.J., Van Leeuwen, C., Kok, J., Vos, P., de Vos, W.M., and Venema, G. (1990) Appl. Environ. Microbiol. 56, 1890-1896.