ISS1E
- Family IS6
- Group
Isoform ISS1NSynonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
X60734 | ND | Lactococcus lactis | Lactococcus lactis MG1820 |
DNA section
IS Length : 808 bp
Ends
IR Length : 15/18
IRL : CCTTCTGTTGCAAAGTTTTCCAAAAAATCTATTTTAGTGTAAAATTGAGA
IRR : GGTTCTGTTGCGAAGTTTGAAAATCAAACGCATTCTCTCTGAACTCCAAA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|
DNA sequence
CCTTCTGTTGCAAAGTTTTCCAAAAAATCTATTTTAGTGTAAAATTGAGAAAAAAGACAGAGAGGACAGAGTAATGAATCATTTTAAAGGCAAACAATTC
AAAAAAGACGTCATTATTGTCGCTGTTGGTTACTACCTGCGTTACAATCTAAGCTATCGTGAAGTTCAGGAATTGTTATATGATCGTGGAATAAATGTTT
GTCATACTACGATTTATCGTTGGGTGCAAGAGTACAGCAAAGTCCTCTATTATCTTTGGAAGAAGAAAAATAGACAATCCTTCTATTCATGGAAAATGGA
CGAAACCTATATCAAAATTAAGGGACGTTGGCATTATCTTTATCGTGCAATTGATGCGGACGGCTTAACCTTAGATATCTGGTTACGAAAGAAACGGGAT
ACGCAAGCAGCCTATGCTTTCTTAAAACGACTCCATAAACAGTTTGGTGAGCCGAAAGCAATTGTGACCGATAAAGCACCTTCTCTTGGCTCCGCCTTTA
GAAAGTTACAGAGTGTGGGTTTATATACTAAGACAGAGCACCGAACTGTGAAGTATCTTAACAATTTAATAGAACAAGACCATCAACCTATTAAACGACG
GAATAAATTTTGTCAAAGTCTCCGTACAGCCTCTTCCACGATTAAGGGCATAAAGACCCTTCGAGGAATATATAAAAAGAACCGAAGAAATGGAACGCTC
TTCGGCTTTTCGGTGTCTACTGAAATCAAGGTATTAATGGGAATAACAGCCTAAGATATTTGGAGTTCAGAGAGAATGCGTTTGATTTTCAAACTTCGCA
ACAGAACC
AAAAAAGACGTCATTATTGTCGCTGTTGGTTACTACCTGCGTTACAATCTAAGCTATCGTGAAGTTCAGGAATTGTTATATGATCGTGGAATAAATGTTT
GTCATACTACGATTTATCGTTGGGTGCAAGAGTACAGCAAAGTCCTCTATTATCTTTGGAAGAAGAAAAATAGACAATCCTTCTATTCATGGAAAATGGA
CGAAACCTATATCAAAATTAAGGGACGTTGGCATTATCTTTATCGTGCAATTGATGCGGACGGCTTAACCTTAGATATCTGGTTACGAAAGAAACGGGAT
ACGCAAGCAGCCTATGCTTTCTTAAAACGACTCCATAAACAGTTTGGTGAGCCGAAAGCAATTGTGACCGATAAAGCACCTTCTCTTGGCTCCGCCTTTA
GAAAGTTACAGAGTGTGGGTTTATATACTAAGACAGAGCACCGAACTGTGAAGTATCTTAACAATTTAATAGAACAAGACCATCAACCTATTAAACGACG
GAATAAATTTTGTCAAAGTCTCCGTACAGCCTCTTCCACGATTAAGGGCATAAAGACCCTTCGAGGAATATATAAAAAGAACCGAAGAAATGGAACGCTC
TTCGGCTTTTCGGTGTCTACTGAAATCAAGGTATTAATGGGAATAACAGCCTAAGATATTTGGAGTTCAGAGAGAATGCGTTTGATTTTCAAACTTCGCA
ACAGAACC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
681 bp | 226 aa | 74 | 754 | + | No |
Chemistry : DDE
ORF sequence :
MNHFKGKQFKKDVIIVAVGYYLRYNLSYREVQELLYDRGINVCHTTIYRWVQEYSKVLYYLWKKKNRQSFYSWKMDETYIKIKGRWHYLYRAIDADGLTL
DIWLRKKRDTQAAYAFLKRLHKQFGEPKAIVTDKAPSLGSAFRKLQSVGLYTKTEHRTVKYLNNLIEQDHQPIKRRNKFCQSLRTASSTIKGIKTLRGIY
KKNRRNGTLFGFSVSTEIKVLMGITA
DIWLRKKRDTQAAYAFLKRLHKQFGEPKAIVTDKAPSLGSAFRKLQSVGLYTKTEHRTVKYLNNLIEQDHQPIKRRNKFCQSLRTASSTIKGIKTLRGIY
KKNRRNGTLFGFSVSTEIKVLMGITA
Blast result :
Comments
ISS1E and ISS1D ORFs are identical.
References
1] Van Rooijen, R.J., and de Vos, W.M. (1991) EMBL Data Library, Rel. 29.