ISS1E

  • Family IS6
  • Group
MGE type ISRelated element(s) :
Isoform ISS1NSynonym(s)
Accession numberTranspositionOriginHost
X60734 ND Lactococcus lactis
Lactococcus lactis MG1820
DNA section
IS Length : 808 bp

Ends


IR Length : 15/18

IRL : CCTTCTGTTGCAAAGTTTTCCAAAAAATCTATTTTAGTGTAAAATTGAGA
IRR : GGTTCTGTTGCGAAGTTTGAAAATCAAACGCATTCTCTCTGAACTCCAAA

Insertion site


Left flankDirect repeatRight flankDR Length

DNA sequence

CCTTCTGTTGCAAAGTTTTCCAAAAAATCTATTTTAGTGTAAAATTGAGAAAAAAGACAGAGAGGACAGAGTAATGAATCATTTTAAAGGCAAACAATTC
AAAAAAGACGTCATTATTGTCGCTGTTGGTTACTACCTGCGTTACAATCTAAGCTATCGTGAAGTTCAGGAATTGTTATATGATCGTGGAATAAATGTTT
GTCATACTACGATTTATCGTTGGGTGCAAGAGTACAGCAAAGTCCTCTATTATCTTTGGAAGAAGAAAAATAGACAATCCTTCTATTCATGGAAAATGGA
CGAAACCTATATCAAAATTAAGGGACGTTGGCATTATCTTTATCGTGCAATTGATGCGGACGGCTTAACCTTAGATATCTGGTTACGAAAGAAACGGGAT
ACGCAAGCAGCCTATGCTTTCTTAAAACGACTCCATAAACAGTTTGGTGAGCCGAAAGCAATTGTGACCGATAAAGCACCTTCTCTTGGCTCCGCCTTTA
GAAAGTTACAGAGTGTGGGTTTATATACTAAGACAGAGCACCGAACTGTGAAGTATCTTAACAATTTAATAGAACAAGACCATCAACCTATTAAACGACG
GAATAAATTTTGTCAAAGTCTCCGTACAGCCTCTTCCACGATTAAGGGCATAAAGACCCTTCGAGGAATATATAAAAAGAACCGAAGAAATGGAACGCTC
TTCGGCTTTTCGGTGTCTACTGAAATCAAGGTATTAATGGGAATAACAGCCTAAGATATTTGGAGTTCAGAGAGAATGCGTTTGATTTTCAAACTTCGCA
ACAGAACC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
681 bp226 aa74754+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MNHFKGKQFKKDVIIVAVGYYLRYNLSYREVQELLYDRGINVCHTTIYRWVQEYSKVLYYLWKKKNRQSFYSWKMDETYIKIKGRWHYLYRAIDADGLTL
DIWLRKKRDTQAAYAFLKRLHKQFGEPKAIVTDKAPSLGSAFRKLQSVGLYTKTEHRTVKYLNNLIEQDHQPIKRRNKFCQSLRTASSTIKGIKTLRGIY
KKNRRNGTLFGFSVSTEIKVLMGITA

 

Blast result :
Comments
ISS1E and ISS1D ORFs are identical.
References
1] Van Rooijen, R.J., and de Vos, W.M. (1991) EMBL Data Library, Rel. 29.