ISS1D
- Family IS6
- Group
Isoform ISS1NSynonym(s) ISS1/pTD1
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| X62737 | ND | Lactococcus lactis | Lactococcus lactis subsp. lactis W81 Lactococcus lactis subsp. lactis W67 plasmid pTD1 Lactococcus lactis subsp. cremoris AC1 Lactococcus lactis subsp. cremoris FD4 Lactococcus lactis subsp. cremoris FD50 Lactococcus lactis subsp. cremoris P8-11-35 Lactococcus lactis subsp. cremoris SK11 Lactococcus lactis subsp. cremoris Wg2-1 Lactococcus lactis subsp. diacetylactis Bu2 Lactococcus lactis subsp. diacetylactis F7/2 Lactococcus lactis subsp. diacetylactis W932 Lactococcus lactis subsp. lactis 712 Lactococcus lactis subsp. lactis 3078 Lactococcus lactis subsp. lactis ATCC11454 Lactococcus lactis subsp. lactis FA318 Lactococcus lactis subsp. lactis F7/1 Lactococcus lactis subsp. lactis K9-1-10 Lactococcus lactis subsp. lactis NIZO15 Lactococcus lactis subsp. lactis W53 |
DNA section
IS Length : 808 bp
Ends
IR Length : 17/18
IRL : GGTTCTGTTGCAAAGTTTTCGGAAAAATCTATTTTAGTGTAAAATTGAGA
IRR : GGTTCTGTTGCGAAGTTTGAAAATCAAACGCATTCTCTCTGAACTCCAAA
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|
DNA sequence
GGTTCTGTTGCAAAGTTTTCGGAAAAATCTATTTTAGTGTAAAATTGAGAAAAAAGACAGAGAGGACAGAGTAATGAATCATTTTAAAGGCAAACAATTC
AAAAAAGACGTCATTATTGTCGCTGTTGGTTACTACCTGCGTTACAATCTAAGCTATCGTGAAGTTCAGGAATTGTTATATGATCGTGGAATAAATGTTT
GTCATACTACGATTTATCGTTGGGTGCAAGAGTACAGCAAAGTCCTCTATTATCTTTGGAAGAAGAAAAATAGACAATCCTTCTATTCATGGAAAATGGA
CGAAACCTATATCAAAATTAAGGGACGTTGGCATTATCTTTATCGTGCAATTGATGCGGACGGCTTAACCTTAGATATCTGGTTACGAAAGAAACGGGAT
ACGCAAGCAGCCTATGCTTTCTTAAAACGACTCCATAAACAGTTTGGTGAGCCGAAAGCAATTGTCACGGATAAAGCACCTTCTCTTGGCTCCGCCTTTA
GAAAGTTACAGAGTGTGGGTTTATATACTAAGACAGAGCACCGAACTGTGAAGTATCTTAACAATTTAATAGAACAAGACCATCAACCTATTAAACGACG
CAATAAATTTTGTCAAAGTCTCCGTACAGCCTCTTCCACGATTAAGGGCATAAAGACCCTTCGAGGAATATATAAAAAGAACCGAAGAAATGGAACGCTC
TTCGGCTTTTCGGTGTCTACTGAAATCAAGGTATTAATGGGAATAACAGCCTAAGATATTTGGAGTTCAGAGAGAATGCGTTTGATTTTCAAACTTCGCA
ACAGAACC
AAAAAAGACGTCATTATTGTCGCTGTTGGTTACTACCTGCGTTACAATCTAAGCTATCGTGAAGTTCAGGAATTGTTATATGATCGTGGAATAAATGTTT
GTCATACTACGATTTATCGTTGGGTGCAAGAGTACAGCAAAGTCCTCTATTATCTTTGGAAGAAGAAAAATAGACAATCCTTCTATTCATGGAAAATGGA
CGAAACCTATATCAAAATTAAGGGACGTTGGCATTATCTTTATCGTGCAATTGATGCGGACGGCTTAACCTTAGATATCTGGTTACGAAAGAAACGGGAT
ACGCAAGCAGCCTATGCTTTCTTAAAACGACTCCATAAACAGTTTGGTGAGCCGAAAGCAATTGTCACGGATAAAGCACCTTCTCTTGGCTCCGCCTTTA
GAAAGTTACAGAGTGTGGGTTTATATACTAAGACAGAGCACCGAACTGTGAAGTATCTTAACAATTTAATAGAACAAGACCATCAACCTATTAAACGACG
CAATAAATTTTGTCAAAGTCTCCGTACAGCCTCTTCCACGATTAAGGGCATAAAGACCCTTCGAGGAATATATAAAAAGAACCGAAGAAATGGAACGCTC
TTCGGCTTTTCGGTGTCTACTGAAATCAAGGTATTAATGGGAATAACAGCCTAAGATATTTGGAGTTCAGAGAGAATGCGTTTGATTTTCAAACTTCGCA
ACAGAACC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 681 bp | 226 aa | 74 | 754 | + | No |
Chemistry : DDE
ORF sequence :
MNHFKGKQFKKDVIIVAVGYYLRYNLSYREVQELLYDRGINVCHTTIYRWVQEYSKVLYYLWKKKNRQSFYSWKMDETYIKIKGRWHYLYRAIDADGLTL
DIWLRKKRDTQAAYAFLKRLHKQFGEPKAIVTDKAPSLGSAFRKLQSVGLYTKTEHRTVKYLNNLIEQDHQPIKRRNKFCQSLRTASSTIKGIKTLRGIY
KKNRRNGTLFGFSVSTEIKVLMGITA
DIWLRKKRDTQAAYAFLKRLHKQFGEPKAIVTDKAPSLGSAFRKLQSVGLYTKTEHRTVKYLNNLIEQDHQPIKRRNKFCQSLRTASSTIKGIKTLRGIY
KKNRRNGTLFGFSVSTEIKVLMGITA
Blast result :
Comments
-
References