ISRtr1
- Family IS256
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AF041379 | ND | Rhizobium tropici | Rhizobium tropici |
DNA section
IS Length : 1364 bp
Ends
IR Length : 24/28
IRL : GATCGTGTCCCATGGAGTGGTGTAGCTTGATTTCATAGCCATCGGTGATT
IRR : GATCATGTCCCAGGACGTGGTGTAGCTTAGACGACCACGGCTCATCCCAG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|
DNA sequence
GATCGTGTCCCATGGAGTGGTGTAGCTTGATTTCATAGCCATCGGTGATTTCCGGTAGGGTCGGGTTGCTTAGAGCCAACCTGAGGGACACCACCGATGA
CCGACGACATGATGAACCTGCGCTCACTCGTTGAGAAGAGCGCTGATGCCGATTTGCTGCGGGAGATGATCGGCTTTGCTGCCGAGAAGCTGATGGCGCT
GGAGGTCGGCACGAACACCGGCGCGGCCTATGGCGAGAAGGAATGGCTTCCGGCTGGCCCAGCGTAACGGCTATCGCGACCGGGATTGGGAGACACGGGC
GGGCACCGTCGACGTGCGCGCATTCCCCAAGCTTCGCACCGGCAGCTACTTCCCGAGCTTCCTGGAGCCGCGCCGCATGGCCGAGAAGGCTCTGACGGCG
GTCATCCAGGAGGCTTATATCCAGGGTGTTTCGACCCGCTCTGTTGATGACCTCGTCAAGGCCATGGGCATGTCGGGCATCTCCAAAAGTCAGGTGTCCC
CGGCTCTGCGAGGAGATCGATGAGAAGGTGAAGGCCTTCCTCGACAGGCCCATCGAAGGAGAATGGCCCTACCTGTGGATCGATGCGACCTACCTCAAGG
TTCGGCGCGGTGGTCGTATTGTCTCCGTCGCCGTAATCATCGCCGTCGGCGTCAACACCGATGGCCGACGCGAAGTGCTCGGCATGGAGATCGGCACGTC
CGAGGCCGAGGCGATCTGGACCGAGTTTCTTCGAAAGCTGATCAGGCGGGGCTGGCGCGGCGTCAAGCTCGTCGTCTCCGATGCCCATGAGGGCATCAAG
GCCGCAGTATCGAAAGTGCTTTCCGCCACCTGGCAGCGCTGCAGGGTGCACTTTATGCGCAATGCCTTGGCCCATGCTGGAAAGAGCGGACGCCGGGTTG
TCTCCGCGTTCATTGCAACGGCCTTCGCTCAGGACACGCCGGGAGGCCGCAAGCACTCAGTGGCGCAACGTCGCCGACCAGATCAGGCCAAAGGTACCGA
AGCTCGCCAGTCTCATGGACAGTGCCGAGCAAGACGTGCTCGCCTACATGACCTTTCCCAAGCAGCATTGGGCCAAACTTCACTCGACCAACCCCATTGA
GCGATTGAACGGTGAGATCAAGCGGCGCACAGAGGTCGTCGGCATTTTCCCCAACGACGACGCCATCGTGCGCCTGGTCGGTGCGCTGCTGCTCGAACAG
AACGATGAATGGGCCGTCCAGCGATCCCGCTACATGACACTTGAGACAATCGCCACAATGAGCGATGATCCGCTCATCAGCCTGCCAGCAGCAAGCTGAT
ACTCATCCGACCCTCTGGGATGAGCCGTGGTCGTCTAAGCTACACCACGTCCTGGGACATGATC
CCGACGACATGATGAACCTGCGCTCACTCGTTGAGAAGAGCGCTGATGCCGATTTGCTGCGGGAGATGATCGGCTTTGCTGCCGAGAAGCTGATGGCGCT
GGAGGTCGGCACGAACACCGGCGCGGCCTATGGCGAGAAGGAATGGCTTCCGGCTGGCCCAGCGTAACGGCTATCGCGACCGGGATTGGGAGACACGGGC
GGGCACCGTCGACGTGCGCGCATTCCCCAAGCTTCGCACCGGCAGCTACTTCCCGAGCTTCCTGGAGCCGCGCCGCATGGCCGAGAAGGCTCTGACGGCG
GTCATCCAGGAGGCTTATATCCAGGGTGTTTCGACCCGCTCTGTTGATGACCTCGTCAAGGCCATGGGCATGTCGGGCATCTCCAAAAGTCAGGTGTCCC
CGGCTCTGCGAGGAGATCGATGAGAAGGTGAAGGCCTTCCTCGACAGGCCCATCGAAGGAGAATGGCCCTACCTGTGGATCGATGCGACCTACCTCAAGG
TTCGGCGCGGTGGTCGTATTGTCTCCGTCGCCGTAATCATCGCCGTCGGCGTCAACACCGATGGCCGACGCGAAGTGCTCGGCATGGAGATCGGCACGTC
CGAGGCCGAGGCGATCTGGACCGAGTTTCTTCGAAAGCTGATCAGGCGGGGCTGGCGCGGCGTCAAGCTCGTCGTCTCCGATGCCCATGAGGGCATCAAG
GCCGCAGTATCGAAAGTGCTTTCCGCCACCTGGCAGCGCTGCAGGGTGCACTTTATGCGCAATGCCTTGGCCCATGCTGGAAAGAGCGGACGCCGGGTTG
TCTCCGCGTTCATTGCAACGGCCTTCGCTCAGGACACGCCGGGAGGCCGCAAGCACTCAGTGGCGCAACGTCGCCGACCAGATCAGGCCAAAGGTACCGA
AGCTCGCCAGTCTCATGGACAGTGCCGAGCAAGACGTGCTCGCCTACATGACCTTTCCCAAGCAGCATTGGGCCAAACTTCACTCGACCAACCCCATTGA
GCGATTGAACGGTGAGATCAAGCGGCGCACAGAGGTCGTCGGCATTTTCCCCAACGACGACGCCATCGTGCGCCTGGTCGGTGCGCTGCTGCTCGAACAG
AACGATGAATGGGCCGTCCAGCGATCCCGCTACATGACACTTGAGACAATCGCCACAATGAGCGATGATCCGCTCATCAGCCTGCCAGCAGCAAGCTGAT
ACTCATCCGACCCTCTGGGATGAGCCGTGGTCGTCTAAGCTACACCACGTCCTGGGACATGATC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
845 bp | 281 aa | 97 | 941 | + | No |
Chemistry : DDE
ORF sequence :
Blast result :
Comments
The transposase is inactive, there are unexpected frameshifts.
References
1] Mavingui, P., Laeremans, T., Flores, M., Romero, D., Martinez-Romero, E. and Palacios R. (1998) J. Bact. 180, 2866-2874.