ISRtr1

  • Family IS256
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AF041379 ND Rhizobium tropici
Rhizobium tropici
DNA section
IS Length : 1364 bp

Ends


IR Length : 24/28

IRL : GATCGTGTCCCATGGAGTGGTGTAGCTTGATTTCATAGCCATCGGTGATT
IRR : GATCATGTCCCAGGACGTGGTGTAGCTTAGACGACCACGGCTCATCCCAG

Insertion site


Left flankDirect repeatRight flankDR Length

DNA sequence

GATCGTGTCCCATGGAGTGGTGTAGCTTGATTTCATAGCCATCGGTGATTTCCGGTAGGGTCGGGTTGCTTAGAGCCAACCTGAGGGACACCACCGATGA
CCGACGACATGATGAACCTGCGCTCACTCGTTGAGAAGAGCGCTGATGCCGATTTGCTGCGGGAGATGATCGGCTTTGCTGCCGAGAAGCTGATGGCGCT
GGAGGTCGGCACGAACACCGGCGCGGCCTATGGCGAGAAGGAATGGCTTCCGGCTGGCCCAGCGTAACGGCTATCGCGACCGGGATTGGGAGACACGGGC
GGGCACCGTCGACGTGCGCGCATTCCCCAAGCTTCGCACCGGCAGCTACTTCCCGAGCTTCCTGGAGCCGCGCCGCATGGCCGAGAAGGCTCTGACGGCG
GTCATCCAGGAGGCTTATATCCAGGGTGTTTCGACCCGCTCTGTTGATGACCTCGTCAAGGCCATGGGCATGTCGGGCATCTCCAAAAGTCAGGTGTCCC
CGGCTCTGCGAGGAGATCGATGAGAAGGTGAAGGCCTTCCTCGACAGGCCCATCGAAGGAGAATGGCCCTACCTGTGGATCGATGCGACCTACCTCAAGG
TTCGGCGCGGTGGTCGTATTGTCTCCGTCGCCGTAATCATCGCCGTCGGCGTCAACACCGATGGCCGACGCGAAGTGCTCGGCATGGAGATCGGCACGTC
CGAGGCCGAGGCGATCTGGACCGAGTTTCTTCGAAAGCTGATCAGGCGGGGCTGGCGCGGCGTCAAGCTCGTCGTCTCCGATGCCCATGAGGGCATCAAG
GCCGCAGTATCGAAAGTGCTTTCCGCCACCTGGCAGCGCTGCAGGGTGCACTTTATGCGCAATGCCTTGGCCCATGCTGGAAAGAGCGGACGCCGGGTTG
TCTCCGCGTTCATTGCAACGGCCTTCGCTCAGGACACGCCGGGAGGCCGCAAGCACTCAGTGGCGCAACGTCGCCGACCAGATCAGGCCAAAGGTACCGA
AGCTCGCCAGTCTCATGGACAGTGCCGAGCAAGACGTGCTCGCCTACATGACCTTTCCCAAGCAGCATTGGGCCAAACTTCACTCGACCAACCCCATTGA
GCGATTGAACGGTGAGATCAAGCGGCGCACAGAGGTCGTCGGCATTTTCCCCAACGACGACGCCATCGTGCGCCTGGTCGGTGCGCTGCTGCTCGAACAG
AACGATGAATGGGCCGTCCAGCGATCCCGCTACATGACACTTGAGACAATCGCCACAATGAGCGATGATCCGCTCATCAGCCTGCCAGCAGCAAGCTGAT
ACTCATCCGACCCTCTGGGATGAGCCGTGGTCGTCTAAGCTACACCACGTCCTGGGACATGATC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
845 bp281 aa97941+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

 

Blast result :
Comments
The transposase is inactive, there are unexpected frameshifts.
References
1] Mavingui, P., Laeremans, T., Flores, M., Romero, D., Martinez-Romero, E. and Palacios R. (1998) J. Bact. 180, 2866-2874.