ISRso9
- Family IS5
- Group IS5
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_003295 | ND | Ralstonia solanacearum | Ralstonia solanacearum |
DNA section
IS Length : 1483 bp
Ends
IR Length : 15/19
IRL : GTCGACCCTGAACAATCCGCAGAGCCTTGAAGTACAAGGCGTTGCAGCCG
IRR : GTCCGTCCTGAACAATTCGTTTTCCTGTGGTGCCGATTTCATACCGGCAA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CGGCGCTGAT | TCCTTA | CGCCCGCAAT | 6 |
DNA sequence
GTCGACCCTGAACAATCCGCAGAGCCTTGAAGTACAAGGCGTTGCAGCCGAAACGGTGTTGTAGGAATTGCAGGAGGCGTGCATATTGGCGCGATCATCC
TGCAAATTTCGTTGAGGTTTGAATGGGTCCGAAGGCACCAGTCAGCGAGGGAGACTTCTTCCGGCAGCCGCTGCGCGAGCAGATCAACCTGAAGCATCCG
CTGGTACGCCTGGCCGATCTGATCGACTGGGAGCGGTTGAGCGCCGTGATGAGCGAGAGCTTCGTGTCCAAGCGCGGCCGCCCGGCCACCTCGCCACGCT
TGATTGCTGGCTTGCTGTATTTGCAGCACGCGTTTGACCTGTCCGATGAGGAAGTCGTCTGGCAATGGGTTGAGAACCCGTACTGGCAGGTATTCACTGG
CGAGACGTACCTGCAGACCGAGCCGCCGATCGACCCGTCGAGCCTGACGCGCTGGCGCAAGCGGTTGGGCGAAGCAGGCGTGGAAGAGCTGCTGGCCGAG
ACGATCGGAGTGGCCAAACGAGCCGGGGTGATCAAGGCCGCCAGCATCAAGCGCGTGATCGTCGACACGACGGTGATGCCGAAGGCAATCGCACATCCGA
CCGATTCGCGCTTGCTGGAACGATGTCGCGAGCATCTGGTGAAGGCGGCAGCCCAGCACGGGCTAAAACTACGACAGAACTACAACCGCGAGGCGCCACG
GCTGGCGGGCCAGATTGGCCGCTACGCACACGCCAAGCAGTACAAGCGCATGAAGCGCGCGCTGCGCACCTTGCGCTCGCGGGTGGGTCGGGTGATGCGC
GACGTTGAGCGACAGCTCGGCGCGGTGGCGGCGCAAAGCCGCACAGCGCTGGAAGACCTGATTGGCCGCACCAAGCGGATTCTGTCGCAGAAGCCTAAGG
ACAAGCACAAGCTCTACGCGCTGCATGCGCCGGAGGTGGAATGCATCAGCAAGGGCAAGGCCAGAACGCCGTACGAGTTCGGCGTGAAGGTGTCGATCAC
GACCACACACAAGGAAGGGCTGGTGCTGGGCGCGCGCTCGATGCCGGGCAATCCGTACGACGGGCACACGCTGGCCGAGGCGCTGGAGCAGGCAGAGATT
CTCAGTGACGCGCGAGCGCAGATTGCCATCGTTGATCGTGGTTACCGGGGCGTCGACGTTGAAGGCGTGAAGGTCTACCACCCTGGGCTTCGGCGCGGCA
TCACGCGTGGCCTGCGCGCGATGATCCGACGGCGCAGTGCCATCGAACCCGCCATCGGCCACATGAAGGCCGACGGCAAGCTCGACCGGAACTGGCTCAA
AGGGTCACTGGGCGACGCGATGCATGCGGTGCTCTGCGGCGCTGGCCACAACCTGCGCATGATCCTGAGGAAGCTGCGGCTTCTTTACGCCGTCATTCTT
GCCGCGCTGCTTGGACGAATCCGCCCTTGTGCATTGCCGGTATGAAATCGGCACCACAGGAAAACGAATTGTTCAGGACGGAC
TGCAAATTTCGTTGAGGTTTGAATGGGTCCGAAGGCACCAGTCAGCGAGGGAGACTTCTTCCGGCAGCCGCTGCGCGAGCAGATCAACCTGAAGCATCCG
CTGGTACGCCTGGCCGATCTGATCGACTGGGAGCGGTTGAGCGCCGTGATGAGCGAGAGCTTCGTGTCCAAGCGCGGCCGCCCGGCCACCTCGCCACGCT
TGATTGCTGGCTTGCTGTATTTGCAGCACGCGTTTGACCTGTCCGATGAGGAAGTCGTCTGGCAATGGGTTGAGAACCCGTACTGGCAGGTATTCACTGG
CGAGACGTACCTGCAGACCGAGCCGCCGATCGACCCGTCGAGCCTGACGCGCTGGCGCAAGCGGTTGGGCGAAGCAGGCGTGGAAGAGCTGCTGGCCGAG
ACGATCGGAGTGGCCAAACGAGCCGGGGTGATCAAGGCCGCCAGCATCAAGCGCGTGATCGTCGACACGACGGTGATGCCGAAGGCAATCGCACATCCGA
CCGATTCGCGCTTGCTGGAACGATGTCGCGAGCATCTGGTGAAGGCGGCAGCCCAGCACGGGCTAAAACTACGACAGAACTACAACCGCGAGGCGCCACG
GCTGGCGGGCCAGATTGGCCGCTACGCACACGCCAAGCAGTACAAGCGCATGAAGCGCGCGCTGCGCACCTTGCGCTCGCGGGTGGGTCGGGTGATGCGC
GACGTTGAGCGACAGCTCGGCGCGGTGGCGGCGCAAAGCCGCACAGCGCTGGAAGACCTGATTGGCCGCACCAAGCGGATTCTGTCGCAGAAGCCTAAGG
ACAAGCACAAGCTCTACGCGCTGCATGCGCCGGAGGTGGAATGCATCAGCAAGGGCAAGGCCAGAACGCCGTACGAGTTCGGCGTGAAGGTGTCGATCAC
GACCACACACAAGGAAGGGCTGGTGCTGGGCGCGCGCTCGATGCCGGGCAATCCGTACGACGGGCACACGCTGGCCGAGGCGCTGGAGCAGGCAGAGATT
CTCAGTGACGCGCGAGCGCAGATTGCCATCGTTGATCGTGGTTACCGGGGCGTCGACGTTGAAGGCGTGAAGGTCTACCACCCTGGGCTTCGGCGCGGCA
TCACGCGTGGCCTGCGCGCGATGATCCGACGGCGCAGTGCCATCGAACCCGCCATCGGCCACATGAAGGCCGACGGCAAGCTCGACCGGAACTGGCTCAA
AGGGTCACTGGGCGACGCGATGCATGCGGTGCTCTGCGGCGCTGGCCACAACCTGCGCATGATCCTGAGGAAGCTGCGGCTTCTTTACGCCGTCATTCTT
GCCGCGCTGCTTGGACGAATCCGCCCTTGTGCATTGCCGGTATGAAATCGGCACCACAGGAAAACGAATTGTTCAGGACGGAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1323 bp | 440 aa | 123 | 1445 | + | No |
Chemistry : DDE
ORF sequence :
MGPKAPVSEGDFFRQPLREQINLKHPLVRLADLIDWERLSAVMSESFVSKRGRPATSPRLIAGLLYLQHAFDLSDEEVVWQWVENPYWQVFTGETYLQTE
PPIDPSSLTRWRKRLGEAGVEELLAETIGVAKRAGVIKAASIKRVIVDTTVMPKAIAHPTDSRLLERCREHLVKAAAQHGLKLRQNYNREAPRLAGQIGR
YAHAKQYKRMKRALRTLRSRVGRVMRDVERQLGAVAAQSRTALEDLIGRTKRILSQKPKDKHKLYALHAPEVECISKGKARTPYEFGVKVSITTTHKEGL
VLGARSMPGNPYDGHTLAEALEQAEILSDARAQIAIVDRGYRGVDVEGVKVYHPGLRRGITRGLRAMIRRRSAIEPAIGHMKADGKLDRNWLKGSLGDAM
HAVLCGAGHNLRMILRKLRLLYAVILAALLGRIRPCALPV
PPIDPSSLTRWRKRLGEAGVEELLAETIGVAKRAGVIKAASIKRVIVDTTVMPKAIAHPTDSRLLERCREHLVKAAAQHGLKLRQNYNREAPRLAGQIGR
YAHAKQYKRMKRALRTLRSRVGRVMRDVERQLGAVAAQSRTALEDLIGRTKRILSQKPKDKHKLYALHAPEVECISKGKARTPYEFGVKVSITTTHKEGL
VLGARSMPGNPYDGHTLAEALEQAEILSDARAQIAIVDRGYRGVDVEGVKVYHPGLRRGITRGLRAMIRRRSAIEPAIGHMKADGKLDRNWLKGSLGDAM
HAVLCGAGHNLRMILRKLRLLYAVILAALLGRIRPCALPV
Blast result :
Comments
There are 6 copies of ISRso9 on Ralstonia solanacearum genome (4 on chromosome and 2 on megaplasmid).
References
1] Salanoubat,M., Genin,S., Artiguenave,F., Gouzy,J., Mangenot,S.,Arlat,M., Billault,A., Brottier,P., Camus,J.C., Cattolico,L., Chandler,M., Choisne,N., Claudel-Renard,C., Cunnac,S., Demange,N., Gaspin,C., Lavie,M., Moisan,A., Robert,C., Saurin,W., Schiex,T., Siguier,P., Thebault,P., Whalen,M., Wincker,P., Levy,M., Weissenbach,J. and Boucher,C.A. (2002) Nature 415 (6871), 497-502