ISRso7

  • Family IS256
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_003295 ND Ralstonia solanacearum
Ralstonia solanacearum
DNA section
IS Length : 1344 bp

Ends


IR Length : 25/30

IRL : GGGCCTGTCAGTAATTTCGTGTTCAAGGCATAACATGCTCGCAAGGAGAC
IRR : GGGAGTGTCAGGATTTCCGTGTTCAAGGCGGGGTTGAGATTCATACGGAC

Insertion site


Left flankDirect repeatRight flankDR Length
TAGTTTTTTAACAGATTTACTTTGGCC8

DNA sequence

GGGCCTGTCAGTAATTTCGTGTTCAAGGCATAACATGCTCGCAAGGAGACGTTATGCCTCGCAAACTGAAAGCCAAGCCGGTGGACCTGCCGGCGATCCC
CGCCGAACTGCTCGAACAATTCGGCAACGGCCCGATGACGGCCGAAGCCATCAATGCCGCGACACTGGCCCTCAAGAAGGCCCTGATCGAACGGGCGCTG
AGCGGCGAGATGAATCACCATCTCGGCTACCCGCCTGGCGCCGCCAAACCGGCCACCGTTACCAACCAGCGCAACGGCTCGGGCGCCAAGACGGTTCTGA
CCGAGGACGGCCCGATCCGCATCGAGGTACCGCGCGACCGTGACGGCAGCTTCGAACCGCTGCTCATTCCCAAACACGAGCGACGCTTCAAGGGCTTTGA
CGACAAGATCGTCGCCATGTACGCCCGGGGCATGACCGTGCGCGAGATCCAAGGCTTCCTGCTGGAGCAATATGCAACGGAAGTCTCCCCCGAGTTCATC
AGCTCGGTCACCGATGAGGTGATGGCCGAAGTCACCGCGTGGCAGGCCCGGCCACTCGATCCCATGTATCCGGTCGTGTTCTTCGACGCGCTGCGGGTCA
AGATCCGGGAAGACGCCGTGGTGCGCAACAAGGCCGTCTATCTGGCGCTGGGGGTTCTGCCCGACGGCACGCGTGACATTCTGGGCCTGTGGATCGAAAA
CACCGAGGGCGCCAAGTTCTGGATGAAGGTGTTCAACGACCTGAAGACGCGCGGGGTCAATGACATCCTGATCGCCGTGACGGACGGCCTCAAAGGCATG
CCCGAAGCGCTGGCGGCCGTGTTCCCGGCGACCACGCTGCAGACCTGCATCGTCCACCTGATCCGCAACAGCCTGGATTACGCGAGCTGGAAGGACCGCC
GTGAGCTGGCCGCCGCGATCCGGCCGATCTACACAGCGGCGAGCGCAGAGGCCGCACAGGCCGAGCTCGATGCGTTTGCCGACGGCCCGTGGGGGCAGAG
ATACCCGACGGTGTGCGCCGCCTGGCGCAACGCCTGGGATCGCGTGATTCCGTTCTTTGCGTTCCCACCGGCGGTGCGCAAGGTGATTTACACGACGAAC
GCCATCGAGAACATCAACGCCCAACTACGCAAGATCATCAAGACCCGAGGCCACTTCCCGACCGATGATGCAGCAACGAAGCTCATCTGGCTTGCACTGC
GCAACATCACGGCGGGTTGGAGCCGTGCCGCTCACGATTGGAAGCAGGCCATGAACCAATTCGCTATCCTCTACGCGGAGCGATTCGTTCGACCGTCCGT
ATGAATCTCAACCCCGCCTTGAACACGGAAATCCTGACACTCCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1251 bp416 aa541304+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MPRKLKAKPVDLPAIPAELLEQFGNGPMTAEAINAATLALKKALIERALSGEMNHHLGYPPGAAKPATVTNQRNGSGAKTVLTEDGPIRIEVPRDRDGSF
EPLLIPKHERRFKGFDDKIVAMYARGMTVREIQGFLLEQYATEVSPEFISSVTDEVMAEVTAWQARPLDPMYPVVFFDALRVKIREDAVVRNKAVYLALG
VLPDGTRDILGLWIENTEGAKFWMKVFNDLKTRGVNDILIAVTDGLKGMPEALAAVFPATTLQTCIVHLIRNSLDYASWKDRRELAAAIRPIYTAASAEA
AQAELDAFADGPWGQRYPTVCAAWRNAWDRVIPFFAFPPAVRKVIYTTNAIENINAQLRKIIKTRGHFPTDDAATKLIWLALRNITAGWSRAAHDWKQAM
NQFAILYAERFVRPSV

 

Blast result :
Comments
There are 2 copies of ISRso (1 on chromosome and 1 on megaplasmid).
References
1] Salanoubat,M., Genin,S., Artiguenave,F., Gouzy,J., Mangenot,S.,Arlat,M., Billault,A., Brottier,P., Camus,J.C., Cattolico,L., Chandler,M., Choisne,N., Claudel-Renard,C., Cunnac,S., Demange,N., Gaspin,C., Lavie,M., Moisan,A., Robert,C., Saurin,W., Schiex,T., Siguier,P., Thebault,P., Whalen,M., Wincker,P., Levy,M., Weissenbach,J. and Boucher,C.A. (2002) Nature 415 (6871), 497-502