ISRso7
- Family IS256
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_003295 | ND | Ralstonia solanacearum | Ralstonia solanacearum |
DNA section
IS Length : 1344 bp
Ends
IR Length : 25/30
IRL : GGGCCTGTCAGTAATTTCGTGTTCAAGGCATAACATGCTCGCAAGGAGAC
IRR : GGGAGTGTCAGGATTTCCGTGTTCAAGGCGGGGTTGAGATTCATACGGAC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TAGTTTTTTA | ACAGATTT | ACTTTGGCC | 8 |
DNA sequence
GGGCCTGTCAGTAATTTCGTGTTCAAGGCATAACATGCTCGCAAGGAGACGTTATGCCTCGCAAACTGAAAGCCAAGCCGGTGGACCTGCCGGCGATCCC
CGCCGAACTGCTCGAACAATTCGGCAACGGCCCGATGACGGCCGAAGCCATCAATGCCGCGACACTGGCCCTCAAGAAGGCCCTGATCGAACGGGCGCTG
AGCGGCGAGATGAATCACCATCTCGGCTACCCGCCTGGCGCCGCCAAACCGGCCACCGTTACCAACCAGCGCAACGGCTCGGGCGCCAAGACGGTTCTGA
CCGAGGACGGCCCGATCCGCATCGAGGTACCGCGCGACCGTGACGGCAGCTTCGAACCGCTGCTCATTCCCAAACACGAGCGACGCTTCAAGGGCTTTGA
CGACAAGATCGTCGCCATGTACGCCCGGGGCATGACCGTGCGCGAGATCCAAGGCTTCCTGCTGGAGCAATATGCAACGGAAGTCTCCCCCGAGTTCATC
AGCTCGGTCACCGATGAGGTGATGGCCGAAGTCACCGCGTGGCAGGCCCGGCCACTCGATCCCATGTATCCGGTCGTGTTCTTCGACGCGCTGCGGGTCA
AGATCCGGGAAGACGCCGTGGTGCGCAACAAGGCCGTCTATCTGGCGCTGGGGGTTCTGCCCGACGGCACGCGTGACATTCTGGGCCTGTGGATCGAAAA
CACCGAGGGCGCCAAGTTCTGGATGAAGGTGTTCAACGACCTGAAGACGCGCGGGGTCAATGACATCCTGATCGCCGTGACGGACGGCCTCAAAGGCATG
CCCGAAGCGCTGGCGGCCGTGTTCCCGGCGACCACGCTGCAGACCTGCATCGTCCACCTGATCCGCAACAGCCTGGATTACGCGAGCTGGAAGGACCGCC
GTGAGCTGGCCGCCGCGATCCGGCCGATCTACACAGCGGCGAGCGCAGAGGCCGCACAGGCCGAGCTCGATGCGTTTGCCGACGGCCCGTGGGGGCAGAG
ATACCCGACGGTGTGCGCCGCCTGGCGCAACGCCTGGGATCGCGTGATTCCGTTCTTTGCGTTCCCACCGGCGGTGCGCAAGGTGATTTACACGACGAAC
GCCATCGAGAACATCAACGCCCAACTACGCAAGATCATCAAGACCCGAGGCCACTTCCCGACCGATGATGCAGCAACGAAGCTCATCTGGCTTGCACTGC
GCAACATCACGGCGGGTTGGAGCCGTGCCGCTCACGATTGGAAGCAGGCCATGAACCAATTCGCTATCCTCTACGCGGAGCGATTCGTTCGACCGTCCGT
ATGAATCTCAACCCCGCCTTGAACACGGAAATCCTGACACTCCC
CGCCGAACTGCTCGAACAATTCGGCAACGGCCCGATGACGGCCGAAGCCATCAATGCCGCGACACTGGCCCTCAAGAAGGCCCTGATCGAACGGGCGCTG
AGCGGCGAGATGAATCACCATCTCGGCTACCCGCCTGGCGCCGCCAAACCGGCCACCGTTACCAACCAGCGCAACGGCTCGGGCGCCAAGACGGTTCTGA
CCGAGGACGGCCCGATCCGCATCGAGGTACCGCGCGACCGTGACGGCAGCTTCGAACCGCTGCTCATTCCCAAACACGAGCGACGCTTCAAGGGCTTTGA
CGACAAGATCGTCGCCATGTACGCCCGGGGCATGACCGTGCGCGAGATCCAAGGCTTCCTGCTGGAGCAATATGCAACGGAAGTCTCCCCCGAGTTCATC
AGCTCGGTCACCGATGAGGTGATGGCCGAAGTCACCGCGTGGCAGGCCCGGCCACTCGATCCCATGTATCCGGTCGTGTTCTTCGACGCGCTGCGGGTCA
AGATCCGGGAAGACGCCGTGGTGCGCAACAAGGCCGTCTATCTGGCGCTGGGGGTTCTGCCCGACGGCACGCGTGACATTCTGGGCCTGTGGATCGAAAA
CACCGAGGGCGCCAAGTTCTGGATGAAGGTGTTCAACGACCTGAAGACGCGCGGGGTCAATGACATCCTGATCGCCGTGACGGACGGCCTCAAAGGCATG
CCCGAAGCGCTGGCGGCCGTGTTCCCGGCGACCACGCTGCAGACCTGCATCGTCCACCTGATCCGCAACAGCCTGGATTACGCGAGCTGGAAGGACCGCC
GTGAGCTGGCCGCCGCGATCCGGCCGATCTACACAGCGGCGAGCGCAGAGGCCGCACAGGCCGAGCTCGATGCGTTTGCCGACGGCCCGTGGGGGCAGAG
ATACCCGACGGTGTGCGCCGCCTGGCGCAACGCCTGGGATCGCGTGATTCCGTTCTTTGCGTTCCCACCGGCGGTGCGCAAGGTGATTTACACGACGAAC
GCCATCGAGAACATCAACGCCCAACTACGCAAGATCATCAAGACCCGAGGCCACTTCCCGACCGATGATGCAGCAACGAAGCTCATCTGGCTTGCACTGC
GCAACATCACGGCGGGTTGGAGCCGTGCCGCTCACGATTGGAAGCAGGCCATGAACCAATTCGCTATCCTCTACGCGGAGCGATTCGTTCGACCGTCCGT
ATGAATCTCAACCCCGCCTTGAACACGGAAATCCTGACACTCCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1251 bp | 416 aa | 54 | 1304 | + | No |
Chemistry : DDE
ORF sequence :
MPRKLKAKPVDLPAIPAELLEQFGNGPMTAEAINAATLALKKALIERALSGEMNHHLGYPPGAAKPATVTNQRNGSGAKTVLTEDGPIRIEVPRDRDGSF
EPLLIPKHERRFKGFDDKIVAMYARGMTVREIQGFLLEQYATEVSPEFISSVTDEVMAEVTAWQARPLDPMYPVVFFDALRVKIREDAVVRNKAVYLALG
VLPDGTRDILGLWIENTEGAKFWMKVFNDLKTRGVNDILIAVTDGLKGMPEALAAVFPATTLQTCIVHLIRNSLDYASWKDRRELAAAIRPIYTAASAEA
AQAELDAFADGPWGQRYPTVCAAWRNAWDRVIPFFAFPPAVRKVIYTTNAIENINAQLRKIIKTRGHFPTDDAATKLIWLALRNITAGWSRAAHDWKQAM
NQFAILYAERFVRPSV
EPLLIPKHERRFKGFDDKIVAMYARGMTVREIQGFLLEQYATEVSPEFISSVTDEVMAEVTAWQARPLDPMYPVVFFDALRVKIREDAVVRNKAVYLALG
VLPDGTRDILGLWIENTEGAKFWMKVFNDLKTRGVNDILIAVTDGLKGMPEALAAVFPATTLQTCIVHLIRNSLDYASWKDRRELAAAIRPIYTAASAEA
AQAELDAFADGPWGQRYPTVCAAWRNAWDRVIPFFAFPPAVRKVIYTTNAIENINAQLRKIIKTRGHFPTDDAATKLIWLALRNITAGWSRAAHDWKQAM
NQFAILYAERFVRPSV
Blast result :
Comments
There are 2 copies of ISRso (1 on chromosome and 1 on megaplasmid).
References
1] Salanoubat,M., Genin,S., Artiguenave,F., Gouzy,J., Mangenot,S.,Arlat,M., Billault,A., Brottier,P., Camus,J.C., Cattolico,L., Chandler,M., Choisne,N., Claudel-Renard,C., Cunnac,S., Demange,N., Gaspin,C., Lavie,M., Moisan,A., Robert,C., Saurin,W., Schiex,T., Siguier,P., Thebault,P., Whalen,M., Wincker,P., Levy,M., Weissenbach,J. and Boucher,C.A. (2002) Nature 415 (6871), 497-502