ISRso15
- Family ISL3
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_003295 | ND | Ralstonia solanacearum | Ralstonia solanacearum |
DNA section
IS Length : 1304 bp
Ends
IR Length : 17/19
IRL : GGTTCTTCGAAGAATTCCGTGAGCCTGAACTGGCACATTCCGTATGCTGA
IRR : GGTTCATCGAGGAATTCCGGGGAACGCGGCGCGGATCTTGAGGAAGAAGT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GCGCCGCGCA | TAAAAAAA/T | TGGCGGCGTC | 8 |
DNA sequence
GGTTCTTCGAAGAATTCCGTGAGCCTGAACTGGCACATTCCGTATGCTGACGCCGACAAGGACAGGTGTTAGGAGGTGGGATGCTGGATCGCAAGACACT
GCAAGCGCTGGGCTGCTGGAAGGGTTACCGCCTGGAGCGCGTGGAGTGGCCGCAAGGCGAGAGCCGCACGCTATCGCTCTATCTGAAGCCAGTCAGCAAG
GTCATGCACTGTGAGCAATGCGGAACGCGTTGCTCGCAGATTCATGAGACGACAGCTCGGCGGGTACGTGATCTGCCGCTCTTCGAGTACCGGGTGGTGC
TGCACGTCCCACGCCGGCGCGTGTGGTGCGAGCGTTGTGGCGGACCTCGGCTGGAGAAGCTGGACTGGCTGGGCCGCTACCAGAGAGTGACGCAGCGATT
CGCCGAGGCCTGCGAGAAGCTGCTGCAGTCGAGCAGCGTACAGGCGGTGGCCGCGTTCTACGATCTGGGCTGGCACACGGTCAAATCGATCGACAAGATG
CGCTTGCGAGCGCGTGTGGTCGAACCGGACTGGTCGACGATCCGTTATCTGGCGATGGACGAGTTCGCACTCCATAAAGGCCATCGCTATGCCACGGTGG
TCGTTGATCCGATCGGCCGGCAGGTGCTCTGGATCGGGCCGGGGCGCTCGCGCGAGACTGCCCGCGCCTTCTTCGAACAGCTTCCGGAGGGCGTTGCCCA
GCGCATCGAGGCGGTGGCAATCGACATGACGACCGCCTACGAACTGGAGATCAACGCGCATTGCCCGCAGGCCGAGGTGGTCTACGACTTGTTCCACGTC
GTGGCCAAGTATGGGCGTGAGGTGATCGACCGGGTGCGGGTGGATCAGGCCAATCAACTCCGGCATGACAAGCCGGCCCGGAAGGTTCTGAAGTCCAGCC
GGTGGCTGTTGCTACGCAAGCGCCACAATCTGAAGCCAGAGCAGGCCGTGCACCTGAAGGAGCTGCTGGCCGCCAATCAGTCGCTGTTATGCGTCTACGT
GCTGCGCGACGAGTTGAAACGGCTCTGGTTTTACCGCAGACCGGCCTGGGCGCAAAAGGCCTGGGAACAATGGTTTGAGCAGGCTCGGCAAAGCGGGATC
GCCGCTTTGCAACTGTTCGCCCAGCGCCTGGAGGGCTACTGGCATGGAATTCTGGCCCGCTGCCGCCACCCGCTCAACACCAGCGTCGTCGAAGGCATCA
ACAACACCATCAAGGTCATCAAACGTCGGGCTTACGGGTACCGCGACGAGGAATACTTCTTCCTCAAGATCCGCGCCGCGTTCCCCGGAATTCCTCGATG
AACC
GCAAGCGCTGGGCTGCTGGAAGGGTTACCGCCTGGAGCGCGTGGAGTGGCCGCAAGGCGAGAGCCGCACGCTATCGCTCTATCTGAAGCCAGTCAGCAAG
GTCATGCACTGTGAGCAATGCGGAACGCGTTGCTCGCAGATTCATGAGACGACAGCTCGGCGGGTACGTGATCTGCCGCTCTTCGAGTACCGGGTGGTGC
TGCACGTCCCACGCCGGCGCGTGTGGTGCGAGCGTTGTGGCGGACCTCGGCTGGAGAAGCTGGACTGGCTGGGCCGCTACCAGAGAGTGACGCAGCGATT
CGCCGAGGCCTGCGAGAAGCTGCTGCAGTCGAGCAGCGTACAGGCGGTGGCCGCGTTCTACGATCTGGGCTGGCACACGGTCAAATCGATCGACAAGATG
CGCTTGCGAGCGCGTGTGGTCGAACCGGACTGGTCGACGATCCGTTATCTGGCGATGGACGAGTTCGCACTCCATAAAGGCCATCGCTATGCCACGGTGG
TCGTTGATCCGATCGGCCGGCAGGTGCTCTGGATCGGGCCGGGGCGCTCGCGCGAGACTGCCCGCGCCTTCTTCGAACAGCTTCCGGAGGGCGTTGCCCA
GCGCATCGAGGCGGTGGCAATCGACATGACGACCGCCTACGAACTGGAGATCAACGCGCATTGCCCGCAGGCCGAGGTGGTCTACGACTTGTTCCACGTC
GTGGCCAAGTATGGGCGTGAGGTGATCGACCGGGTGCGGGTGGATCAGGCCAATCAACTCCGGCATGACAAGCCGGCCCGGAAGGTTCTGAAGTCCAGCC
GGTGGCTGTTGCTACGCAAGCGCCACAATCTGAAGCCAGAGCAGGCCGTGCACCTGAAGGAGCTGCTGGCCGCCAATCAGTCGCTGTTATGCGTCTACGT
GCTGCGCGACGAGTTGAAACGGCTCTGGTTTTACCGCAGACCGGCCTGGGCGCAAAAGGCCTGGGAACAATGGTTTGAGCAGGCTCGGCAAAGCGGGATC
GCCGCTTTGCAACTGTTCGCCCAGCGCCTGGAGGGCTACTGGCATGGAATTCTGGCCCGCTGCCGCCACCCGCTCAACACCAGCGTCGTCGAAGGCATCA
ACAACACCATCAAGGTCATCAAACGTCGGGCTTACGGGTACCGCGACGAGGAATACTTCTTCCTCAAGATCCGCGCCGCGTTCCCCGGAATTCCTCGATG
AACC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1221 bp | 406 aa | 81 | 1301 | + | No |
Chemistry : Unknow
ORF sequence :
MLDRKTLQALGCWKGYRLERVEWPQGESRTLSLYLKPVSKVMHCEQCGTRCSQIHETTARRVRDLPLFEYRVVLHVPRRRVWCERCGGPRLEKLDWLGRY
QRVTQRFAEACEKLLQSSSVQAVAAFYDLGWHTVKSIDKMRLRARVVEPDWSTIRYLAMDEFALHKGHRYATVVVDPIGRQVLWIGPGRSRETARAFFEQ
LPEGVAQRIEAVAIDMTTAYELEINAHCPQAEVVYDLFHVVAKYGREVIDRVRVDQANQLRHDKPARKVLKSSRWLLLRKRHNLKPEQAVHLKELLAANQ
SLLCVYVLRDELKRLWFYRRPAWAQKAWEQWFEQARQSGIAALQLFAQRLEGYWHGILARCRHPLNTSVVEGINNTIKVIKRRAYGYRDEEYFFLKIRAA
FPGIPR
QRVTQRFAEACEKLLQSSSVQAVAAFYDLGWHTVKSIDKMRLRARVVEPDWSTIRYLAMDEFALHKGHRYATVVVDPIGRQVLWIGPGRSRETARAFFEQ
LPEGVAQRIEAVAIDMTTAYELEINAHCPQAEVVYDLFHVVAKYGREVIDRVRVDQANQLRHDKPARKVLKSSRWLLLRKRHNLKPEQAVHLKELLAANQ
SLLCVYVLRDELKRLWFYRRPAWAQKAWEQWFEQARQSGIAALQLFAQRLEGYWHGILARCRHPLNTSVVEGINNTIKVIKRRAYGYRDEEYFFLKIRAA
FPGIPR
Blast result :
Comments
There are 2 copies of ISRso15 on Ralstonia solanacearum genome (1 on chromosome and 1 on megaplasmid).
References
1] Salanoubat,M., Genin,S., Artiguenave,F., Gouzy,J., Mangenot,S.,Arlat,M., Billault,A., Brottier,P., Camus,J.C., Cattolico,L., Chandler,M., Choisne,N., Claudel-Renard,C., Cunnac,S., Demange,N., Gaspin,C., Lavie,M., Moisan,A., Robert,C., Saurin,W., Schiex,T., Siguier,P., Thebault,P., Whalen,M., Wincker,P., Levy,M., Weissenbach,J. and Boucher,C.A. (2002) Nature 415 (6871), 497-502