ISRm15

  • Family IS5
  • Group IS1031
MGE type ISRelated element(s) :
Isoform Synonym(s) ISpRM220-12-1
Accession numberTranspositionOriginHost
AF126536 ND Sinorhizobium meliloti
Sinorhizobium meliloti 220-12
DNA section
IS Length : 934 bp

Ends


IR Length : 17/18

IRL : GAGCCTGACCGAAAAAGAGTTGAGTGAAATCAGCCAGTTGTGATTCCTTC
IRR : GAGCCTGACTCGAAAAGAACTCAATAGACATGGTACCTTGCGAGCCTCCG

Insertion site


Left flankDirect repeatRight flankDR Length

DNA sequence

GAGCCTGACCGAAAAAGAGTTGAGTGAAATCAGCCAGTTGTGATTCCTTCGGATTTGCTTAGGATTCGATGGAGACCGCAATGGGCTGGACTGATTTCAC
CCGTCGCCAATATGGCCGACGGACGGGGCGTTATGCAAGTGATCTGACGGACAGGGAGTGGTCGCTGATTGCTCCGTTTATGCCGATGCCCCCGCAGCTC
GGTCGACCGCGCAAGACGGAATTGCGCGAGGTTCTGAACGCACTGCTTTATATCGCGTCGACTGGTTGCCAATGGCGGATGCTACCAAAGGATTTTCCAC
CTTATTCAACCGTGCAGGGTTATTTCTACGAGTGGCGGTCGACTGGCTTGTGGCTGCGGATCAACTATCATCTCGTTATGGAGACGCGAGAGCTGGAAGG
AAAGGAAGCCTCACCGACGGCAGGCGTGATCGACAGTCAGAGCGTCAAAACGACTGAAAGCGGGGGGATCGCGGGCTATGACGCGGGCAAGAAGATCAAA
GGTCGCAAGCGTCATATCGTTGTTGACACGCTCGGCTTGATGGTGGGGCTCGTCGTTCACAGTGCTGACATTCAAGACCGCGATGGTGCCGTAGCGGCGC
TCAAAACCGTCCTCAGACGCTGGCCGTGGCTCAGGAATATCTTTGCTGACGGCGGCTATGCCGGTCCGAAACTGCGGGCCTCATTGCGCAACGTCGCAAA
GTTCACGCTGCAGATCGTCAAGCGAACAGACAAGGCCAAGGGCTTCGAGGTGCTGCCGCGTCGCTGGGTCGTGGAGCGCACATTCGCCTGGCTTGGTCGA
TGCAGGCGACTGGCCAAGGATTGGGAAAAATCAATTGCCTCCGCTGAAGCCTGGATGCTCATCGCCCACATCCGCATTCTCACCCGGAGGCTCGCAAGGT
ACCATGTCTATTGAGTTCTTTTCGAGTCAGGCTC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
834 bp277 aa81914+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MGWTDFTRRQYGRRTGRYASDLTDREWSLIAPFMPMPPQLGRPRKTELREVLNALLYIASTGCQWRMLPKDFPPYSTVQGYFYEWRSTGLWLRINYHLVM
ETRELEGKEASPTAGVIDSQSVKTTESGGIAGYDAGKKIKGRKRHIVVDTLGLMVGLVVHSADIQDRDGAVAALKTVLRRWPWLRNIFADGGYAGPKLRA
SLRNVAKFTLQIVKRTDKAKGFEVLPRRWVVERTFAWLGRCRRLAKDWEKSIASAEAWMLIAHIRILTRRLARYHVY

 

Blast result :
Comments
References
1] Selbitschka,W., Diekmann,B., Labes,G., Schneiker,S., Schroeder,G., Puehler,A., Lopez,M.F. and Toro,N. (1999) Direct submission Genbank.