ISRm15
- Family IS5
- Group IS1031
Isoform Synonym(s) ISpRM220-12-1
Accession number | Transposition | Origin | Host |
---|---|---|---|
AF126536 | ND | Sinorhizobium meliloti | Sinorhizobium meliloti 220-12 |
DNA section
IS Length : 934 bp
Ends
IR Length : 17/18
IRL : GAGCCTGACCGAAAAAGAGTTGAGTGAAATCAGCCAGTTGTGATTCCTTC
IRR : GAGCCTGACTCGAAAAGAACTCAATAGACATGGTACCTTGCGAGCCTCCG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|
DNA sequence
GAGCCTGACCGAAAAAGAGTTGAGTGAAATCAGCCAGTTGTGATTCCTTCGGATTTGCTTAGGATTCGATGGAGACCGCAATGGGCTGGACTGATTTCAC
CCGTCGCCAATATGGCCGACGGACGGGGCGTTATGCAAGTGATCTGACGGACAGGGAGTGGTCGCTGATTGCTCCGTTTATGCCGATGCCCCCGCAGCTC
GGTCGACCGCGCAAGACGGAATTGCGCGAGGTTCTGAACGCACTGCTTTATATCGCGTCGACTGGTTGCCAATGGCGGATGCTACCAAAGGATTTTCCAC
CTTATTCAACCGTGCAGGGTTATTTCTACGAGTGGCGGTCGACTGGCTTGTGGCTGCGGATCAACTATCATCTCGTTATGGAGACGCGAGAGCTGGAAGG
AAAGGAAGCCTCACCGACGGCAGGCGTGATCGACAGTCAGAGCGTCAAAACGACTGAAAGCGGGGGGATCGCGGGCTATGACGCGGGCAAGAAGATCAAA
GGTCGCAAGCGTCATATCGTTGTTGACACGCTCGGCTTGATGGTGGGGCTCGTCGTTCACAGTGCTGACATTCAAGACCGCGATGGTGCCGTAGCGGCGC
TCAAAACCGTCCTCAGACGCTGGCCGTGGCTCAGGAATATCTTTGCTGACGGCGGCTATGCCGGTCCGAAACTGCGGGCCTCATTGCGCAACGTCGCAAA
GTTCACGCTGCAGATCGTCAAGCGAACAGACAAGGCCAAGGGCTTCGAGGTGCTGCCGCGTCGCTGGGTCGTGGAGCGCACATTCGCCTGGCTTGGTCGA
TGCAGGCGACTGGCCAAGGATTGGGAAAAATCAATTGCCTCCGCTGAAGCCTGGATGCTCATCGCCCACATCCGCATTCTCACCCGGAGGCTCGCAAGGT
ACCATGTCTATTGAGTTCTTTTCGAGTCAGGCTC
CCGTCGCCAATATGGCCGACGGACGGGGCGTTATGCAAGTGATCTGACGGACAGGGAGTGGTCGCTGATTGCTCCGTTTATGCCGATGCCCCCGCAGCTC
GGTCGACCGCGCAAGACGGAATTGCGCGAGGTTCTGAACGCACTGCTTTATATCGCGTCGACTGGTTGCCAATGGCGGATGCTACCAAAGGATTTTCCAC
CTTATTCAACCGTGCAGGGTTATTTCTACGAGTGGCGGTCGACTGGCTTGTGGCTGCGGATCAACTATCATCTCGTTATGGAGACGCGAGAGCTGGAAGG
AAAGGAAGCCTCACCGACGGCAGGCGTGATCGACAGTCAGAGCGTCAAAACGACTGAAAGCGGGGGGATCGCGGGCTATGACGCGGGCAAGAAGATCAAA
GGTCGCAAGCGTCATATCGTTGTTGACACGCTCGGCTTGATGGTGGGGCTCGTCGTTCACAGTGCTGACATTCAAGACCGCGATGGTGCCGTAGCGGCGC
TCAAAACCGTCCTCAGACGCTGGCCGTGGCTCAGGAATATCTTTGCTGACGGCGGCTATGCCGGTCCGAAACTGCGGGCCTCATTGCGCAACGTCGCAAA
GTTCACGCTGCAGATCGTCAAGCGAACAGACAAGGCCAAGGGCTTCGAGGTGCTGCCGCGTCGCTGGGTCGTGGAGCGCACATTCGCCTGGCTTGGTCGA
TGCAGGCGACTGGCCAAGGATTGGGAAAAATCAATTGCCTCCGCTGAAGCCTGGATGCTCATCGCCCACATCCGCATTCTCACCCGGAGGCTCGCAAGGT
ACCATGTCTATTGAGTTCTTTTCGAGTCAGGCTC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
834 bp | 277 aa | 81 | 914 | + | No |
Chemistry : DDE
ORF sequence :
MGWTDFTRRQYGRRTGRYASDLTDREWSLIAPFMPMPPQLGRPRKTELREVLNALLYIASTGCQWRMLPKDFPPYSTVQGYFYEWRSTGLWLRINYHLVM
ETRELEGKEASPTAGVIDSQSVKTTESGGIAGYDAGKKIKGRKRHIVVDTLGLMVGLVVHSADIQDRDGAVAALKTVLRRWPWLRNIFADGGYAGPKLRA
SLRNVAKFTLQIVKRTDKAKGFEVLPRRWVVERTFAWLGRCRRLAKDWEKSIASAEAWMLIAHIRILTRRLARYHVY
ETRELEGKEASPTAGVIDSQSVKTTESGGIAGYDAGKKIKGRKRHIVVDTLGLMVGLVVHSADIQDRDGAVAALKTVLRRWPWLRNIFADGGYAGPKLRA
SLRNVAKFTLQIVKRTDKAKGFEVLPRRWVVERTFAWLGRCRRLAKDWEKSIASAEAWMLIAHIRILTRRLARYHVY
Blast result :
Comments
References
1] Selbitschka,W., Diekmann,B., Labes,G., Schneiker,S., Schroeder,G., Puehler,A., Lopez,M.F. and Toro,N. (1999) Direct submission Genbank.