ISRm10-1

  • Family IS630
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AJ242573 ND Sinorhizobium meliloti
Sinorhizobium meliloti 2011
DNA section
IS Length : 1042 bp

Ends


IR Length : 5

IRL : GAGCACGTGCTGCGATCGATGAATCGATTGTGAAGTGACGACGCAGGCCG
IRR : GAGCAGATCCTGTTCAATCCGGGTCATACCCGGCAGCCCTGAAGTAGTTG

Insertion site


Left flankDirect repeatRight flankDR Length
CGGCGCCGTCTAGAGTGCCTGG2

DNA sequence

GAGCACGTGCTGCGATCGATGAATCGATTGTGAAGTGACGACGCAGGCCGAAGCTGATTCAACATCCACAGCGAAGAGGTGGATGATGGGCCAGGCACTG
AGCGACGATCTTCGAATACGGGTTTTGAAAGCGTCTGCAGCGGGCATGTCAGCTCGACAGGCTGCAGCCCGGTTCGGAGTTGGGATCTCGACAGCGATCC
GCTGGATCGCGAGAGCGAAAGAGGGCGAGCTGACCCCTCGGCCGCAGGGCTGGAGGCGGCCATCGGCGGTAGACGCACACGAGGAATTTGTTGTCGCCCT
GATCGAAGAGCGGAAGGACGTGACGCTCGATGAAATGGTCCAGCGCTTGTCCGTCGAACGGCAGGTGAAGATCAGCCGTAGCGCACTTGGCGCCTGGCTT
CGAGGCCGAGGATGGACCTTTAAAAAAAGACCGCACACGCACTGGAGCAAGACCGGCCGGATGTCCTGAAGCCCCGGCGCGTCTGGTTTGATGGTCAGCT
CGATCTCGATCCGGAGAAGCTGATCTTCATCGATGAAACCGGCCTTTCCACGAAGATGGCACGTCTGCGCGGGCGTGCACTGCGAGGCGAACGTTGCCGG
GCCGGCGTACCGCACGGGCACTGGAAGACAACGACCTTCACCGGCGCCTTGCGCCTAACCGGAATGACCGCACCGTTTGTCTACGACGGCGCGATGAACG
GCAACGTCTTCCTGGCCTATGTCGAACAGGTACTTCTGCCGACCCTTCAGGCCGGGGACGTCGTAGTCATGGACAACTTGCCAGCACACAAGACATCCGG
TGTGCGGGATGCCATCGAGCGCGCCGGGGCCAAGCTTATGTTCCTCCCGCCCTATAGCCCAGACTTCAATCCCATCGAGAATGCATTCTCGAAACTGAAA
GCCATGCTGCGAGGCCGCGCGGAGCGAAAGATCGATGCCCTGTGGGACGCAGTCGGCGCCTTGATACCCCGCTTCACTCCTGACGAGTGTGCCAACTACT
TCAGGGCTGCCGGGTATGACCCGGATTGAACAGGATCTGCTC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
944 bp311 aa851028+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MGQALSDDLRIRVLKASAAGMSARQAAARFGVGISTAIRWIARAKEGELTPRPQGWRRPSAVDAHEEFVVALIEERKDVTLDEMVQRLSVERQVKISRSA
LGAWLRGRGWTFTAHALEQDRPDVLKPRRVWFDGQLDLDPEKLIFIDETGLSTKMARLRGRALRGERCRAGVPHGHWKTTTFTGALRLTGMTAPFVYDGA
MNGNVFLAYVEQVLLPTLQAGDVVVMDNLPAHKTSGVRDAIERAGAKLMFLPPYSPDFNPIENAFSKLKAMLRGRAERKIDALWDAVGALIPRFTPDECA
NYFRAAGYDPD

 

Blast result :
Comments
The product of ISRm10-1 is a fusion protein : join 85-420;429-1028 due to a ribosomal slippage.
ISRm10-2 is 66% aa similar with ISRM10 and 60% with IS2011-2.
References
1] Toro,N. (1999)Direct Submission GenBank.