ISRm10-1
- Family IS630
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AJ242573 | ND | Sinorhizobium meliloti | Sinorhizobium meliloti 2011 |
DNA section
IS Length : 1042 bp
Ends
IR Length : 5
IRL : GAGCACGTGCTGCGATCGATGAATCGATTGTGAAGTGACGACGCAGGCCG
IRR : GAGCAGATCCTGTTCAATCCGGGTCATACCCGGCAGCCCTGAAGTAGTTG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CGGCGCCGTC | TA | GAGTGCCTGG | 2 |
DNA sequence
GAGCACGTGCTGCGATCGATGAATCGATTGTGAAGTGACGACGCAGGCCGAAGCTGATTCAACATCCACAGCGAAGAGGTGGATGATGGGCCAGGCACTG
AGCGACGATCTTCGAATACGGGTTTTGAAAGCGTCTGCAGCGGGCATGTCAGCTCGACAGGCTGCAGCCCGGTTCGGAGTTGGGATCTCGACAGCGATCC
GCTGGATCGCGAGAGCGAAAGAGGGCGAGCTGACCCCTCGGCCGCAGGGCTGGAGGCGGCCATCGGCGGTAGACGCACACGAGGAATTTGTTGTCGCCCT
GATCGAAGAGCGGAAGGACGTGACGCTCGATGAAATGGTCCAGCGCTTGTCCGTCGAACGGCAGGTGAAGATCAGCCGTAGCGCACTTGGCGCCTGGCTT
CGAGGCCGAGGATGGACCTTTAAAAAAAGACCGCACACGCACTGGAGCAAGACCGGCCGGATGTCCTGAAGCCCCGGCGCGTCTGGTTTGATGGTCAGCT
CGATCTCGATCCGGAGAAGCTGATCTTCATCGATGAAACCGGCCTTTCCACGAAGATGGCACGTCTGCGCGGGCGTGCACTGCGAGGCGAACGTTGCCGG
GCCGGCGTACCGCACGGGCACTGGAAGACAACGACCTTCACCGGCGCCTTGCGCCTAACCGGAATGACCGCACCGTTTGTCTACGACGGCGCGATGAACG
GCAACGTCTTCCTGGCCTATGTCGAACAGGTACTTCTGCCGACCCTTCAGGCCGGGGACGTCGTAGTCATGGACAACTTGCCAGCACACAAGACATCCGG
TGTGCGGGATGCCATCGAGCGCGCCGGGGCCAAGCTTATGTTCCTCCCGCCCTATAGCCCAGACTTCAATCCCATCGAGAATGCATTCTCGAAACTGAAA
GCCATGCTGCGAGGCCGCGCGGAGCGAAAGATCGATGCCCTGTGGGACGCAGTCGGCGCCTTGATACCCCGCTTCACTCCTGACGAGTGTGCCAACTACT
TCAGGGCTGCCGGGTATGACCCGGATTGAACAGGATCTGCTC
AGCGACGATCTTCGAATACGGGTTTTGAAAGCGTCTGCAGCGGGCATGTCAGCTCGACAGGCTGCAGCCCGGTTCGGAGTTGGGATCTCGACAGCGATCC
GCTGGATCGCGAGAGCGAAAGAGGGCGAGCTGACCCCTCGGCCGCAGGGCTGGAGGCGGCCATCGGCGGTAGACGCACACGAGGAATTTGTTGTCGCCCT
GATCGAAGAGCGGAAGGACGTGACGCTCGATGAAATGGTCCAGCGCTTGTCCGTCGAACGGCAGGTGAAGATCAGCCGTAGCGCACTTGGCGCCTGGCTT
CGAGGCCGAGGATGGACCTTTAAAAAAAGACCGCACACGCACTGGAGCAAGACCGGCCGGATGTCCTGAAGCCCCGGCGCGTCTGGTTTGATGGTCAGCT
CGATCTCGATCCGGAGAAGCTGATCTTCATCGATGAAACCGGCCTTTCCACGAAGATGGCACGTCTGCGCGGGCGTGCACTGCGAGGCGAACGTTGCCGG
GCCGGCGTACCGCACGGGCACTGGAAGACAACGACCTTCACCGGCGCCTTGCGCCTAACCGGAATGACCGCACCGTTTGTCTACGACGGCGCGATGAACG
GCAACGTCTTCCTGGCCTATGTCGAACAGGTACTTCTGCCGACCCTTCAGGCCGGGGACGTCGTAGTCATGGACAACTTGCCAGCACACAAGACATCCGG
TGTGCGGGATGCCATCGAGCGCGCCGGGGCCAAGCTTATGTTCCTCCCGCCCTATAGCCCAGACTTCAATCCCATCGAGAATGCATTCTCGAAACTGAAA
GCCATGCTGCGAGGCCGCGCGGAGCGAAAGATCGATGCCCTGTGGGACGCAGTCGGCGCCTTGATACCCCGCTTCACTCCTGACGAGTGTGCCAACTACT
TCAGGGCTGCCGGGTATGACCCGGATTGAACAGGATCTGCTC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
944 bp | 311 aa | 85 | 1028 | + | No |
Chemistry : DDE
ORF sequence :
MGQALSDDLRIRVLKASAAGMSARQAAARFGVGISTAIRWIARAKEGELTPRPQGWRRPSAVDAHEEFVVALIEERKDVTLDEMVQRLSVERQVKISRSA
LGAWLRGRGWTFTAHALEQDRPDVLKPRRVWFDGQLDLDPEKLIFIDETGLSTKMARLRGRALRGERCRAGVPHGHWKTTTFTGALRLTGMTAPFVYDGA
MNGNVFLAYVEQVLLPTLQAGDVVVMDNLPAHKTSGVRDAIERAGAKLMFLPPYSPDFNPIENAFSKLKAMLRGRAERKIDALWDAVGALIPRFTPDECA
NYFRAAGYDPD
LGAWLRGRGWTFTAHALEQDRPDVLKPRRVWFDGQLDLDPEKLIFIDETGLSTKMARLRGRALRGERCRAGVPHGHWKTTTFTGALRLTGMTAPFVYDGA
MNGNVFLAYVEQVLLPTLQAGDVVVMDNLPAHKTSGVRDAIERAGAKLMFLPPYSPDFNPIENAFSKLKAMLRGRAERKIDALWDAVGALIPRFTPDECA
NYFRAAGYDPD
Blast result :
Comments
The product of ISRm10-1 is a fusion protein : join 85-420;429-1028 due to a ribosomal slippage.
ISRm10-2 is 66% aa similar with ISRM10 and 60% with IS2011-2.
ISRm10-2 is 66% aa similar with ISRM10 and 60% with IS2011-2.
References
1] Toro,N. (1999)Direct Submission GenBank.