ISDpr7

  • Family ISAzo13
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_ADZZ01000210 ND Delta proteobacterium
Delta proteobacterium NaphS2
DNA section
IS Length : 1289 bp

Ends


IR Length : 26/31

IRL : GAATCTGTCCATAAATAACTTGAACAAATAGCGTCATTATGCTATCGGTA
IRR : GAGTCTGTCCGTTAATAACTTGAACATTTAGGGCGAATAGAATAGTTCCA

Insertion site


Left flankDirect repeatRight flankDR Length
AACCAGAAGCTAACTGGCGTGGC3
TGAAGGATGATAAGGATCGTCCC3
GACAATCGCGTAAGAAGGTGAAA3
CCGATAGTTATAACTCGGGC0
TATGACCTCGTAAACGGAAAGCC3
TGAGAGCATCTTAGCACCATATA3
CGCGGGAAGATAAAGGTCTATTG3
TCGACGTTTGTTAATGTTGAGCC3
AACCCGCTTATAAAAGCGCCTTTT0
TATGCGGGACTTAACAAGTGGAG3
TTCGGCAGTCTTAGAAAGGACCA3
TTAAAAAAGGTAAGGCCCGAAGT3
GTTTTTTGACTAAAGTATCGATT3

DNA sequence

GAATCTGTCCATAAATAACTTGAACAAATAGCGTCATTATGCTATCGGTAATTTATGGAAAATAAAATCGAACCGATAGTGAATGAAAAGTTTAATACGC
TCCTTCCAATTCTTGATGAAAAAGGCCGTCGCCTGTGGGCTGCCGCAGAGGCAAAATCTCTTGGTCGTGGTGGTATATCAGCTGTTTCCAAGGCTACAGG
CCTTTCAAGAACAACTATTTATCAGGGCCTCAAAGAAATTGAACCGTCAAATGCTGCAAAGCCTGCTACCAATCGAACACGGGCCAGAGGGGGTGGTCGA
AAACCTATTACCAAGGTCAACCCGATCATCCTTCGTGACTTGGAAGGGATGGTTGAACCAACCACCCGAGGCGATCCCGAATCGCCACTGCGCTGGACAT
GCAAAAGCACGAGGCAGCTGTCGAGAGCTTTGCAGGTTATGGGGCACAAAATCGGTCGGCAAAAGGTATCGGAACTGTTGGCCGATTTGGGTTACAGTCT
CCAAGCGAACCGCAAGGTTCGTGAAGGTTCCCGTCATCCGGACCGCGATGCCCAGTTTCGCTATATTTACAACCAGGTAAAAGTATTTCAGGAGAATAAC
CAACCGGTTATTTCTGTTGACACCAAGAAAAAGGAGCTTGTTGGAGATTTTAAAAACGCAGGCCGGGAATGGCAACCAAAAGGACAACCGGATTCTGTCC
GAGTACACGATTTTGCTGACAAAAATTTGGGCAAGGTTAACCCATATGGTGTATATGATCAGACAGCAAATGTTGGCTGGGTCAGCGTTGGCATTGATCA
TGACACATCATCCTTTGCTGTCGAGAGTATCCGTCGTTGGTGGAAAAGAATGGGCCAGCAAACTTATCCGGAAGCAAAACAACTTCTCATAACGGCGGAT
GGAGGCGGTAGTAACGGATATCGAATTCGGCTTTGGAAAATTGAACTTCAACGGTTTGCAGATGACCAAGGTCTTGAAATCTCCGTGTGCCATCTCCCTC
CTGGCACAAGCAAATGGAATAAAATTGAACATCGAATGTTCAGTCATATCAGCATGAATTGGCGTGGCAAGCCGTTGACGAGTCACGAGGTAATTGTGAA
TCTGATAGCCAACACAACCACTCGACAAGGCCTTAAGATTCAGGCTGAGATTGACTCCAACAGTTATCCAAAGGGGATCAAAGTAACTGACACCGAACTT
GAGAACGTCAATTTGTTTAAGGCCGATTTTCATGGCGAATGGAACTATTCTATTCGCCCTAAATGTTCAAGTTATTAACGGACAGACTC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1224 bp407 aa551278+No
ORF function : Transposase
Chemistry : Unknow

ORF sequence :

MENKIEPIVNEKFNTLLPILDEKGRRLWAAAEAKSLGRGGISAVSKATGLSRTTIYQGLKEIEPSNAAKPATNRTRARGGGRKPITKVNPIILRDLEGMV
EPTTRGDPESPLRWTCKSTRQLSRALQVMGHKIGRQKVSELLADLGYSLQANRKVREGSRHPDRDAQFRYIYNQVKVFQENNQPVISVDTKKKELVGDFK
NAGREWQPKGQPDSVRVHDFADKNLGKVNPYGVYDQTANVGWVSVGIDHDTSSFAVESIRRWWKRMGQQTYPEAKQLLITADGGGSNGYRIRLWKIELQR
FADDQGLEISVCHLPPGTSKWNKIEHRMFSHISMNWRGKPLTSHEVIVNLIANTTTRQGLKIQAEIDSNSYPKGIKVTDTELENVNLFKADFHGEWNYSI
RPKCSSY

 

Blast result :
Comments
ISDpr7 is 75% aa similar to ISCap1.
References
1] ISfinder submission (2012)
2] DeBoy,R., Durkin,A.S., Methe,B. and Young,N. (2010) Direct submission GenBank.