ISDpr7
- Family ISAzo13
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_ADZZ01000210 | ND | Delta proteobacterium | Delta proteobacterium NaphS2 |
DNA section
IS Length : 1289 bp
Ends
IR Length : 26/31
IRL : GAATCTGTCCATAAATAACTTGAACAAATAGCGTCATTATGCTATCGGTA
IRR : GAGTCTGTCCGTTAATAACTTGAACATTTAGGGCGAATAGAATAGTTCCA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AACCAGAAGC | TAA | CTGGCGTGGC | 3 |
TGAAGGATGA | TAA | GGATCGTCCC | 3 |
GACAATCGCG | TAA | GAAGGTGAAA | 3 |
CCGATAGTTA | TAACTCGGGC | 0 | |
TATGACCTCG | TAA | ACGGAAAGCC | 3 |
TGAGAGCATC | TTA | GCACCATATA | 3 |
CGCGGGAAGA | TAA | AGGTCTATTG | 3 |
TCGACGTTTG | TTA | ATGTTGAGCC | 3 |
AACCCGCTTA | TAAAAGCGCCTTTT | 0 | |
TATGCGGGAC | TTA | ACAAGTGGAG | 3 |
TTCGGCAGTC | TTA | GAAAGGACCA | 3 |
TTAAAAAAGG | TAA | GGCCCGAAGT | 3 |
GTTTTTTGAC | TAA | AGTATCGATT | 3 |
DNA sequence
GAATCTGTCCATAAATAACTTGAACAAATAGCGTCATTATGCTATCGGTAATTTATGGAAAATAAAATCGAACCGATAGTGAATGAAAAGTTTAATACGC
TCCTTCCAATTCTTGATGAAAAAGGCCGTCGCCTGTGGGCTGCCGCAGAGGCAAAATCTCTTGGTCGTGGTGGTATATCAGCTGTTTCCAAGGCTACAGG
CCTTTCAAGAACAACTATTTATCAGGGCCTCAAAGAAATTGAACCGTCAAATGCTGCAAAGCCTGCTACCAATCGAACACGGGCCAGAGGGGGTGGTCGA
AAACCTATTACCAAGGTCAACCCGATCATCCTTCGTGACTTGGAAGGGATGGTTGAACCAACCACCCGAGGCGATCCCGAATCGCCACTGCGCTGGACAT
GCAAAAGCACGAGGCAGCTGTCGAGAGCTTTGCAGGTTATGGGGCACAAAATCGGTCGGCAAAAGGTATCGGAACTGTTGGCCGATTTGGGTTACAGTCT
CCAAGCGAACCGCAAGGTTCGTGAAGGTTCCCGTCATCCGGACCGCGATGCCCAGTTTCGCTATATTTACAACCAGGTAAAAGTATTTCAGGAGAATAAC
CAACCGGTTATTTCTGTTGACACCAAGAAAAAGGAGCTTGTTGGAGATTTTAAAAACGCAGGCCGGGAATGGCAACCAAAAGGACAACCGGATTCTGTCC
GAGTACACGATTTTGCTGACAAAAATTTGGGCAAGGTTAACCCATATGGTGTATATGATCAGACAGCAAATGTTGGCTGGGTCAGCGTTGGCATTGATCA
TGACACATCATCCTTTGCTGTCGAGAGTATCCGTCGTTGGTGGAAAAGAATGGGCCAGCAAACTTATCCGGAAGCAAAACAACTTCTCATAACGGCGGAT
GGAGGCGGTAGTAACGGATATCGAATTCGGCTTTGGAAAATTGAACTTCAACGGTTTGCAGATGACCAAGGTCTTGAAATCTCCGTGTGCCATCTCCCTC
CTGGCACAAGCAAATGGAATAAAATTGAACATCGAATGTTCAGTCATATCAGCATGAATTGGCGTGGCAAGCCGTTGACGAGTCACGAGGTAATTGTGAA
TCTGATAGCCAACACAACCACTCGACAAGGCCTTAAGATTCAGGCTGAGATTGACTCCAACAGTTATCCAAAGGGGATCAAAGTAACTGACACCGAACTT
GAGAACGTCAATTTGTTTAAGGCCGATTTTCATGGCGAATGGAACTATTCTATTCGCCCTAAATGTTCAAGTTATTAACGGACAGACTC
TCCTTCCAATTCTTGATGAAAAAGGCCGTCGCCTGTGGGCTGCCGCAGAGGCAAAATCTCTTGGTCGTGGTGGTATATCAGCTGTTTCCAAGGCTACAGG
CCTTTCAAGAACAACTATTTATCAGGGCCTCAAAGAAATTGAACCGTCAAATGCTGCAAAGCCTGCTACCAATCGAACACGGGCCAGAGGGGGTGGTCGA
AAACCTATTACCAAGGTCAACCCGATCATCCTTCGTGACTTGGAAGGGATGGTTGAACCAACCACCCGAGGCGATCCCGAATCGCCACTGCGCTGGACAT
GCAAAAGCACGAGGCAGCTGTCGAGAGCTTTGCAGGTTATGGGGCACAAAATCGGTCGGCAAAAGGTATCGGAACTGTTGGCCGATTTGGGTTACAGTCT
CCAAGCGAACCGCAAGGTTCGTGAAGGTTCCCGTCATCCGGACCGCGATGCCCAGTTTCGCTATATTTACAACCAGGTAAAAGTATTTCAGGAGAATAAC
CAACCGGTTATTTCTGTTGACACCAAGAAAAAGGAGCTTGTTGGAGATTTTAAAAACGCAGGCCGGGAATGGCAACCAAAAGGACAACCGGATTCTGTCC
GAGTACACGATTTTGCTGACAAAAATTTGGGCAAGGTTAACCCATATGGTGTATATGATCAGACAGCAAATGTTGGCTGGGTCAGCGTTGGCATTGATCA
TGACACATCATCCTTTGCTGTCGAGAGTATCCGTCGTTGGTGGAAAAGAATGGGCCAGCAAACTTATCCGGAAGCAAAACAACTTCTCATAACGGCGGAT
GGAGGCGGTAGTAACGGATATCGAATTCGGCTTTGGAAAATTGAACTTCAACGGTTTGCAGATGACCAAGGTCTTGAAATCTCCGTGTGCCATCTCCCTC
CTGGCACAAGCAAATGGAATAAAATTGAACATCGAATGTTCAGTCATATCAGCATGAATTGGCGTGGCAAGCCGTTGACGAGTCACGAGGTAATTGTGAA
TCTGATAGCCAACACAACCACTCGACAAGGCCTTAAGATTCAGGCTGAGATTGACTCCAACAGTTATCCAAAGGGGATCAAAGTAACTGACACCGAACTT
GAGAACGTCAATTTGTTTAAGGCCGATTTTCATGGCGAATGGAACTATTCTATTCGCCCTAAATGTTCAAGTTATTAACGGACAGACTC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1224 bp | 407 aa | 55 | 1278 | + | No |
Chemistry : Unknow
ORF sequence :
MENKIEPIVNEKFNTLLPILDEKGRRLWAAAEAKSLGRGGISAVSKATGLSRTTIYQGLKEIEPSNAAKPATNRTRARGGGRKPITKVNPIILRDLEGMV
EPTTRGDPESPLRWTCKSTRQLSRALQVMGHKIGRQKVSELLADLGYSLQANRKVREGSRHPDRDAQFRYIYNQVKVFQENNQPVISVDTKKKELVGDFK
NAGREWQPKGQPDSVRVHDFADKNLGKVNPYGVYDQTANVGWVSVGIDHDTSSFAVESIRRWWKRMGQQTYPEAKQLLITADGGGSNGYRIRLWKIELQR
FADDQGLEISVCHLPPGTSKWNKIEHRMFSHISMNWRGKPLTSHEVIVNLIANTTTRQGLKIQAEIDSNSYPKGIKVTDTELENVNLFKADFHGEWNYSI
RPKCSSY
EPTTRGDPESPLRWTCKSTRQLSRALQVMGHKIGRQKVSELLADLGYSLQANRKVREGSRHPDRDAQFRYIYNQVKVFQENNQPVISVDTKKKELVGDFK
NAGREWQPKGQPDSVRVHDFADKNLGKVNPYGVYDQTANVGWVSVGIDHDTSSFAVESIRRWWKRMGQQTYPEAKQLLITADGGGSNGYRIRLWKIELQR
FADDQGLEISVCHLPPGTSKWNKIEHRMFSHISMNWRGKPLTSHEVIVNLIANTTTRQGLKIQAEIDSNSYPKGIKVTDTELENVNLFKADFHGEWNYSI
RPKCSSY
Blast result :
Comments
ISDpr7 is 75% aa similar to ISCap1.
References
1] ISfinder submission (2012)
2] DeBoy,R., Durkin,A.S., Methe,B. and Young,N. (2010) Direct submission GenBank.
2] DeBoy,R., Durkin,A.S., Methe,B. and Young,N. (2010) Direct submission GenBank.