ISPsy2
- Family IS5
- Group IS5
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AB063175 | ND | Pseudomonas syringae | Pseudomonas syringae pv. eriobotryae |
DNA section
IS Length : 1194 bp
Ends
IR Length : 12/16
IRL : GGAAACTCTGAAAAAGACTTCCTAATTTGGCAAAATCTCCGGACACCAGT
IRR : GGAAGGTCTGAAGTAGCCGGATGTTTTCCGGCTACCGAGTCCTCAGCACT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|
DNA sequence
GGAAACTCTGAAAAAGACTTCCTAATTTGGCAAAATCTCCGGACACCAGTCGCCGAGCTTTTCGATGATGAAACAGATGACCTTCGCCGACGCCGAGTAT
GCCGGCAAGCGCAAGCAGACTCGTAAGGAATTGTTCCTGATCGAGATGGATCAGGTGGTGCCCTGGAAAGGTTTGATTGCCCTGATTGAGCCCTATTATC
CAAAAGGAGAAGGTGGCCGGCCCGCCTACCCACTGATGGCGATGCTGCGTGTTCATCTGATGCAGAACTGGTTCGGCTACAGCGATCCGGCGATGGAAGA
AGCGCTGTATGAGACGACCATCCTGCGTCAGTTTTCAGGCCTGAGCCTGGAGCGCATTCCAGACGAAACCACCATTCTCAACTTCCGTCGTCTGCTGGAA
AAGCACGAGTTGGCGACCGGGATTCTCGGCGTAATTAATGGTTATCTGGGCGACCGTGGCTTGTCGTTGCGTCAAGGCACCATCGTCGATGCCACGCTGA
TTCACGCGCCCAGTTCGACCAAGAACAAGGATGGCAAACGCGACCCTGAGATGCATCAAACCAAGAAAGGTAACCAGTACTATTTCGGCGCCAAGGCTCA
CATCGGCGCCGACGACGAGTCAGGCCTGGTGCACAGCGTGGTAGTCACAGCGGCCAATGTGGCAGACGTCACGCAGGTTGCCAAACTGCTACACGGCGAG
GAAAACGTAGTCTGCGCCGACGCAGGTTACACCGGGGTTGAGAAGCGCGAAGAACATGCTGGGCGCAAGGTCATTTGGCAGATTGCCGCCCGCCGCAGCA
CTTACAAAAAGCACGGAAAACGCAGTGTTTTGTACAAGGCGATCCGCAAAATCGAGAAGGCCAAGGCTCAGGTTCGCGCCAAGGTCGAGCATCCGTTTCG
GGTCATCAAACGCCAGTTTGGCTATGAAAAAGTGCGCTTTCGGGGCTTGGCCAAGAACACCGCGCAGATGGTGACGTTGTTCGCCCTGTCAAACCTGTGG
ATGGCCCGCCGACATTTGTTGGCGGGCGCAGGAGAGGTGCGCGTGTAATGCAGGAAATGGTTACCGCAAAAGGCTTTGCAGCGGCCGAAAGAGCTGAAAA
GCGAAGATAATTGAGCAAATTTCGACATGCATCGTTTTTTGAAAAGTGCTGAGGACTCGGTAGCCGGAAAACATCCGGCTACTTCAGACCTTCC
GCCGGCAAGCGCAAGCAGACTCGTAAGGAATTGTTCCTGATCGAGATGGATCAGGTGGTGCCCTGGAAAGGTTTGATTGCCCTGATTGAGCCCTATTATC
CAAAAGGAGAAGGTGGCCGGCCCGCCTACCCACTGATGGCGATGCTGCGTGTTCATCTGATGCAGAACTGGTTCGGCTACAGCGATCCGGCGATGGAAGA
AGCGCTGTATGAGACGACCATCCTGCGTCAGTTTTCAGGCCTGAGCCTGGAGCGCATTCCAGACGAAACCACCATTCTCAACTTCCGTCGTCTGCTGGAA
AAGCACGAGTTGGCGACCGGGATTCTCGGCGTAATTAATGGTTATCTGGGCGACCGTGGCTTGTCGTTGCGTCAAGGCACCATCGTCGATGCCACGCTGA
TTCACGCGCCCAGTTCGACCAAGAACAAGGATGGCAAACGCGACCCTGAGATGCATCAAACCAAGAAAGGTAACCAGTACTATTTCGGCGCCAAGGCTCA
CATCGGCGCCGACGACGAGTCAGGCCTGGTGCACAGCGTGGTAGTCACAGCGGCCAATGTGGCAGACGTCACGCAGGTTGCCAAACTGCTACACGGCGAG
GAAAACGTAGTCTGCGCCGACGCAGGTTACACCGGGGTTGAGAAGCGCGAAGAACATGCTGGGCGCAAGGTCATTTGGCAGATTGCCGCCCGCCGCAGCA
CTTACAAAAAGCACGGAAAACGCAGTGTTTTGTACAAGGCGATCCGCAAAATCGAGAAGGCCAAGGCTCAGGTTCGCGCCAAGGTCGAGCATCCGTTTCG
GGTCATCAAACGCCAGTTTGGCTATGAAAAAGTGCGCTTTCGGGGCTTGGCCAAGAACACCGCGCAGATGGTGACGTTGTTCGCCCTGTCAAACCTGTGG
ATGGCCCGCCGACATTTGTTGGCGGGCGCAGGAGAGGTGCGCGTGTAATGCAGGAAATGGTTACCGCAAAAGGCTTTGCAGCGGCCGAAAGAGCTGAAAA
GCGAAGATAATTGAGCAAATTTCGACATGCATCGTTTTTTGAAAAGTGCTGAGGACTCGGTAGCCGGAAAACATCCGGCTACTTCAGACCTTCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
972 bp | 323 aa | 77 | 1048 | + | No |
Chemistry : DDE
ORF sequence :
MTFADAEYAGKRKQTRKELFLIEMDQVVPWKGLIALIEPYYPKGEGGRPAYPLMAMLRVHLMQNWFGYSDPAMEEALYETTILRQFSGLSLERIPDETTI
LNFRRLLEKHELATGILGVINGYLGDRGLSLRQGTIVDATLIHAPSSTKNKDGKRDPEMHQTKKGNQYYFGAKAHIGADDESGLVHSVVVTAANVADVTQ
VAKLLHGEENVVCADAGYTGVEKREEHAGRKVIWQIAARRSTYKKHGKRSVLYKAIRKIEKAKAQVRAKVEHPFRVIKRQFGYEKVRFRGLAKNTAQMVT
LFALSNLWMARRHLLAGAGEVRV
LNFRRLLEKHELATGILGVINGYLGDRGLSLRQGTIVDATLIHAPSSTKNKDGKRDPEMHQTKKGNQYYFGAKAHIGADDESGLVHSVVVTAANVADVTQ
VAKLLHGEENVVCADAGYTGVEKREEHAGRKVIWQIAARRSTYKKHGKRSVLYKAIRKIEKAKAQVRAKVEHPFRVIKRQFGYEKVRFRGLAKNTAQMVT
LFALSNLWMARRHLLAGAGEVRV
Blast result :
Comments
ISPsy2 is 95% aa similar to IS1384.
References
1] Kamiunten,H. (2001) Direct submission GenBank