ISPsy2

  • Family IS5
  • Group IS5
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AB063175 ND Pseudomonas syringae
Pseudomonas syringae pv. eriobotryae
DNA section
IS Length : 1194 bp

Ends


IR Length : 12/16

IRL : GGAAACTCTGAAAAAGACTTCCTAATTTGGCAAAATCTCCGGACACCAGT
IRR : GGAAGGTCTGAAGTAGCCGGATGTTTTCCGGCTACCGAGTCCTCAGCACT

Insertion site


Left flankDirect repeatRight flankDR Length

DNA sequence

GGAAACTCTGAAAAAGACTTCCTAATTTGGCAAAATCTCCGGACACCAGTCGCCGAGCTTTTCGATGATGAAACAGATGACCTTCGCCGACGCCGAGTAT
GCCGGCAAGCGCAAGCAGACTCGTAAGGAATTGTTCCTGATCGAGATGGATCAGGTGGTGCCCTGGAAAGGTTTGATTGCCCTGATTGAGCCCTATTATC
CAAAAGGAGAAGGTGGCCGGCCCGCCTACCCACTGATGGCGATGCTGCGTGTTCATCTGATGCAGAACTGGTTCGGCTACAGCGATCCGGCGATGGAAGA
AGCGCTGTATGAGACGACCATCCTGCGTCAGTTTTCAGGCCTGAGCCTGGAGCGCATTCCAGACGAAACCACCATTCTCAACTTCCGTCGTCTGCTGGAA
AAGCACGAGTTGGCGACCGGGATTCTCGGCGTAATTAATGGTTATCTGGGCGACCGTGGCTTGTCGTTGCGTCAAGGCACCATCGTCGATGCCACGCTGA
TTCACGCGCCCAGTTCGACCAAGAACAAGGATGGCAAACGCGACCCTGAGATGCATCAAACCAAGAAAGGTAACCAGTACTATTTCGGCGCCAAGGCTCA
CATCGGCGCCGACGACGAGTCAGGCCTGGTGCACAGCGTGGTAGTCACAGCGGCCAATGTGGCAGACGTCACGCAGGTTGCCAAACTGCTACACGGCGAG
GAAAACGTAGTCTGCGCCGACGCAGGTTACACCGGGGTTGAGAAGCGCGAAGAACATGCTGGGCGCAAGGTCATTTGGCAGATTGCCGCCCGCCGCAGCA
CTTACAAAAAGCACGGAAAACGCAGTGTTTTGTACAAGGCGATCCGCAAAATCGAGAAGGCCAAGGCTCAGGTTCGCGCCAAGGTCGAGCATCCGTTTCG
GGTCATCAAACGCCAGTTTGGCTATGAAAAAGTGCGCTTTCGGGGCTTGGCCAAGAACACCGCGCAGATGGTGACGTTGTTCGCCCTGTCAAACCTGTGG
ATGGCCCGCCGACATTTGTTGGCGGGCGCAGGAGAGGTGCGCGTGTAATGCAGGAAATGGTTACCGCAAAAGGCTTTGCAGCGGCCGAAAGAGCTGAAAA
GCGAAGATAATTGAGCAAATTTCGACATGCATCGTTTTTTGAAAAGTGCTGAGGACTCGGTAGCCGGAAAACATCCGGCTACTTCAGACCTTCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
972 bp323 aa771048+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MTFADAEYAGKRKQTRKELFLIEMDQVVPWKGLIALIEPYYPKGEGGRPAYPLMAMLRVHLMQNWFGYSDPAMEEALYETTILRQFSGLSLERIPDETTI
LNFRRLLEKHELATGILGVINGYLGDRGLSLRQGTIVDATLIHAPSSTKNKDGKRDPEMHQTKKGNQYYFGAKAHIGADDESGLVHSVVVTAANVADVTQ
VAKLLHGEENVVCADAGYTGVEKREEHAGRKVIWQIAARRSTYKKHGKRSVLYKAIRKIEKAKAQVRAKVEHPFRVIKRQFGYEKVRFRGLAKNTAQMVT
LFALSNLWMARRHLLAGAGEVRV

 

Blast result :
Comments
ISPsy2 is 95% aa similar to IS1384.
References
1] Kamiunten,H. (2001) Direct submission GenBank