ISM1

  • Family ISNCY
  • Group ISM1
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
X02587 ND Methanobrevibacter smithii
Methanobrevibacter smithii
DNA section
IS Length : 1381 bp

Ends


IR Length : 33/34

IRL : GAGTCTGTAAAATTTTATAGGCTTATTTGTTTTTTAATTTTTTACAGTTG
IRR : GAGTCTGTAAAATTTTATAGGCTTATTTGATTTTAATGTGTTTTTCAGTC

Insertion site


Left flankDirect repeatRight flankDR Length
TATTATTTTAATCTTATTTAAATATTGC8

DNA sequence

GAGTCTGTAAAATTTTATAGGCTTATTTGTTTTTTAATTTTTTACAGTTGAACTTTCATTTTGATGAAATTTCATTCTAATTTTTCTTTAATTTTAATAT
AAATGATTTAAAAATAGTAAAATACTTTAATAAGTGAGGACAAATAATATTTTATGACCAAACAAAACAAATCTGCCCTCAATAGTAATATAGACTTCAT
ACAACTTAAACTTTATGATTTTTTTGATGAAAAAATTGATCAAGAAAAAATTATTTCAAAAAGATTGAATAAAACACCTAATTTTGAAAATACTAATCAT
AAACTATTTTTAGATGAAAATAATACTTTTAAATATGATAATCCCATTTGTCCAGTTTGTGGAAGCCACAAAATAATCAAAAAAGGCACAATAAAGAAAA
ACAAACAAAATACTAATGGAAAAACAACAGAATTCAAAGAACAGCAATATCAATGCAAAAAATGTGGAAAAAAATTCGGAATATACAATAATCCATTAAT
TGGTGAAAATAAACAATTTTTACAAGAAATAATGGATAAAATTCCAGGAATAATGAAAATAGGGTACCAATCACTTCGTAAAATAAGTAAATACTTTGAA
ATATTCCTTGGAATCAGAATATCTCATCAAACAATCAAGAACTGGTCTGACAAAAATCACGAAGAAAGCATCAGCAATGAAAAATTTGAATATTCTGGCT
ATTATTTATATGATGAGCAATTTTTAAGACTTAATGGAACTAGACACTACAGATTAACTTTATTTGATGCAATACTCAATATTCCAGTCACAGAACGAAT
AGTACGTCGCAGAATACCAAAAAACACGAAAAAATTTATCTTAGAATCAACAGAAAATAAACCATTCATTTGCCTAACAACCGATTTATTCCCAATGTAT
CGTAATGTAGCAGATGAAATAGAAGTAAAACATCAATTGTGCATATTTCATCTGTTTCAAACAATAAACCATAAATTAAAAGTATATTGTAGAAGAAACA
AGATTAATGGAAAACAAAGAGACCATATTTACGAAAATGCACAAGAATTAAAAAACTGTTTCAGACAAAACTCAAAAAAAGAAGCAATAGAACAATTTAA
ACAATATTTACAAAAATATACGGCCATACCAGTTGTTTTAAAAGATTTCATAAGAAAACATATCATAAATCACTTCCACAGATACGTAGAATATCTTGAT
GATGAAAATATAGAAAAAACATCAAATAAAGTCGAAAATTACTACAGACAAACCAATCCTGAAAAAATAAAGAAAATATACAAAACCAAAAATGGAATCC
TGACATTTTTAGACTATCAAATGCAAAATTGGACTGAAAAACACATTAAAATCAAATAAGCCTATAAAATTTTACAGACTC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1196 bp397 aa1541349+No
ORF function : Transposase
Chemistry : Unknow

ORF sequence :

MTKQNKSALNSNIDFIQLKLYDFFDEKIDQEKIISKRLNKTPNFENTNHKLFLDENNTFKYDNPICPVCGSHKIIKKGTIKKNKQNTNGKTTEFKEQQYQ
CKKCGKKFGIYNNPLIGENKQFLQEIMDKIPGIMKIGYQSLRKISKYFEIFLGIRISHQTIKNWSDKNHEESISNEKFEYSGYYLYDEQFLRLNGTRHYR
LTLFDAILNIPVTERIVRRRIPKNTKKFILESTENKPFICLTTDLFPMYRNVADEIEVKHQLCIFHLFQTINHKLKVYCRRNKINGKQRDHIYENAQELK
NCFRQNSKKEAIEQFKQYLQKYTAIPVVLKDFIRKHIINHFHRYVEYLDDENIEKTSNKVENYYRQTNPEKIKKIYKTKNGILTFLDYQMQNWTEKH

 

Blast result :
Comments
Methanobrevibacter smithii is an archaebacterium. ISM1 might be (very) distantly related to the ISL3 family.
References
1] Hamilton, P.T., and Reeve, J.N. (1985) Mol. Gen. Genet. 200, 47-59.