IS-LL6
- Family IS3
- Group IS3
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
U23813 | ND | Lactococcus lactis | Lactococcus lactis plasmid pWV04 |
DNA section
IS Length : 1254 bp
Ends
IR Length : 7/8
IRL : TGGAGCTATACTATAAAAGTGGACAGAAAATTGTGTGTTATAATCTGTCT
IRR : TGGA CTAATGTCAAATATTTAGACACAAAATGAGCTATATTTTCTTAAA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AAGAAATTAG | TTT | TTTTCTTGCT | 3 |
DNA sequence
TGGAGCTATACTATAAAAGTGGACAGAAAATTGTGTGTTATAATCTGTCTATTAAGACACAAAAATGAAAGGACTTTTATGTCAGGTTTTAAACGTTACG
ACGAGGATTTCAAACAATCGCTCGTTAATCTCTATCAAACTGGTAAAACACAAACTGAACTCTGTAAAGATTATGGGGTATCTTCTTCTGCACTTGCAAA
ATGGATTAAGCAGTACTCTCAAGTGCGTCTTGAAGATAATACGGTGTTGACTGCTAAACCAGATTTCAAGAATTACAAAAAAGGAATGCCAGCTAGAGGA
AGAAAATCTGATCTTAAAAAAAGCGAGTGCCATATTCATGCAAAACTCCAAGTAAGATTGAAAGCCATCTATAGACTCCGATTTGAACACACGACAGTTA
TGCTCTGTCGTGTTTTACATGTCAATCGTTCCACCTACTATAACTTCATAAACAAGAGGCCTTCTAAGCGTGAAATAGAAAATCAACGCTTGAGAAAATT
ACTCCTTGAGATTTATATGAAAGCCAAGAAAAGAATTGGAACGAGAGCTTTTAAAATCATTCTTCTGCGTGATTATGGCGTTAATATTTCTGAAGGCCGT
ATCTTAAGACTTCTCAAGTCTATGACACTCCCTAAAATGTCAACCATCAAACCTCGTTTTAAATCAAATAAATCTCCTGTATTTTCTTCTGATAATCTGC
TTAAACAAGAATTTAACCCGAACTCCCCAAATCAAGTTTGGACAACAGATTTCACTTATATCTCTATAGGACCTAAGCGACATGTTTATCTCTGTGCTAT
TCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATAGGATTGATGCCAAGCTCGCCTGTGACACCTTAGAAATAGCTATAAATAAGAGG
AAACCTAAGGAACCAATTATTTTTCATTCGGATCAAGGAAGCCAATTTAAATCAGCTTCCTTTAGAAAGTTATTAGATGAGCATCAATTGCTTGCTTCTT
ACTCCAAGCCTGGATATCCTTATGATAATGCCGTCACTGAGGTCTTTTTCAAGTATCTTAAACAACGAGAAATTAATCGCAGAACTTATCACTCCATTCA
AGAAGTTCAACTCTCTTGCTTTGAATACATCGAACAATTTTATAACAATTATAATCCTCATTCCGCCAACAATGGTTTAACTCCAAATCAGAAAGAGAAA
ATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTAGTCCA
ACGAGGATTTCAAACAATCGCTCGTTAATCTCTATCAAACTGGTAAAACACAAACTGAACTCTGTAAAGATTATGGGGTATCTTCTTCTGCACTTGCAAA
ATGGATTAAGCAGTACTCTCAAGTGCGTCTTGAAGATAATACGGTGTTGACTGCTAAACCAGATTTCAAGAATTACAAAAAAGGAATGCCAGCTAGAGGA
AGAAAATCTGATCTTAAAAAAAGCGAGTGCCATATTCATGCAAAACTCCAAGTAAGATTGAAAGCCATCTATAGACTCCGATTTGAACACACGACAGTTA
TGCTCTGTCGTGTTTTACATGTCAATCGTTCCACCTACTATAACTTCATAAACAAGAGGCCTTCTAAGCGTGAAATAGAAAATCAACGCTTGAGAAAATT
ACTCCTTGAGATTTATATGAAAGCCAAGAAAAGAATTGGAACGAGAGCTTTTAAAATCATTCTTCTGCGTGATTATGGCGTTAATATTTCTGAAGGCCGT
ATCTTAAGACTTCTCAAGTCTATGACACTCCCTAAAATGTCAACCATCAAACCTCGTTTTAAATCAAATAAATCTCCTGTATTTTCTTCTGATAATCTGC
TTAAACAAGAATTTAACCCGAACTCCCCAAATCAAGTTTGGACAACAGATTTCACTTATATCTCTATAGGACCTAAGCGACATGTTTATCTCTGTGCTAT
TCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATAGGATTGATGCCAAGCTCGCCTGTGACACCTTAGAAATAGCTATAAATAAGAGG
AAACCTAAGGAACCAATTATTTTTCATTCGGATCAAGGAAGCCAATTTAAATCAGCTTCCTTTAGAAAGTTATTAGATGAGCATCAATTGCTTGCTTCTT
ACTCCAAGCCTGGATATCCTTATGATAATGCCGTCACTGAGGTCTTTTTCAAGTATCTTAAACAACGAGAAATTAATCGCAGAACTTATCACTCCATTCA
AGAAGTTCAACTCTCTTGCTTTGAATACATCGAACAATTTTATAACAATTATAATCCTCATTCCGCCAACAATGGTTTAACTCCAAATCAGAAAGAGAAA
ATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTAGTCCA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1158 bp | 385 aa | 79 | 1236 | + | No |
Chemistry : DDE
ORF sequence :
MSGFKRYDEDFKQSLVNLYQTGKTQTELCKDYGVSSSALAKWIKQYSQVRLEDNTVLTAKPDFKNYKKGMPARGRKSDLKKSECHIHAKLQVRLKAIYRL
RFEHTTVMLCRVLHVNRSTYYNFINKRPSKREIENQRLRKLLLEIYMKAKKRIGTRAFKIILLRDYGVNISEGRILRLLKSMTLPKMSTIKPRFKSNKSP
VFSSDNLLKQEFNPNSPNQVWTTDFTYISIGPKRHVYLCAILDLYSRKCIAWKVSDRIDAKLACDTLEIAINKRKPKEPIIFHSDQGSQFKSASFRKLLD
EHQLLASYSKPGYPYDNAVTEVFFKYLKQREINRRTYHSIQEVQLSCFEYIEQFYNNYNPHSANNGLTPNQKEKIILRKYSSFCV
RFEHTTVMLCRVLHVNRSTYYNFINKRPSKREIENQRLRKLLLEIYMKAKKRIGTRAFKIILLRDYGVNISEGRILRLLKSMTLPKMSTIKPRFKSNKSP
VFSSDNLLKQEFNPNSPNQVWTTDFTYISIGPKRHVYLCAILDLYSRKCIAWKVSDRIDAKLACDTLEIAINKRKPKEPIIFHSDQGSQFKSASFRKLLD
EHQLLASYSKPGYPYDNAVTEVFFKYLKQREINRRTYHSIQEVQLSCFEYIEQFYNNYNPHSANNGLTPNQKEKIILRKYSSFCV
Blast result :
Comments
IS-LL6 is 55%aa similar with IS1501 ORF2.
References
1] Kiewiet,R., Seegers,J., Venema,G. and Bron,S. (1996) Direct submission GenBank.