IS-LL6

  • Family IS3
  • Group IS3
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
U23813 ND Lactococcus lactis
Lactococcus lactis plasmid pWV04
DNA section
IS Length : 1254 bp

Ends


IR Length : 7/8

IRL : TGGAGCTATACTATAAAAGTGGACAGAAAATTGTGTGTTATAATCTGTCT
IRR : TGGA CTAATGTCAAATATTTAGACACAAAATGAGCTATATTTTCTTAAA

Insertion site


Left flankDirect repeatRight flankDR Length
AAGAAATTAGTTTTTTTCTTGCT3

DNA sequence

TGGAGCTATACTATAAAAGTGGACAGAAAATTGTGTGTTATAATCTGTCTATTAAGACACAAAAATGAAAGGACTTTTATGTCAGGTTTTAAACGTTACG
ACGAGGATTTCAAACAATCGCTCGTTAATCTCTATCAAACTGGTAAAACACAAACTGAACTCTGTAAAGATTATGGGGTATCTTCTTCTGCACTTGCAAA
ATGGATTAAGCAGTACTCTCAAGTGCGTCTTGAAGATAATACGGTGTTGACTGCTAAACCAGATTTCAAGAATTACAAAAAAGGAATGCCAGCTAGAGGA
AGAAAATCTGATCTTAAAAAAAGCGAGTGCCATATTCATGCAAAACTCCAAGTAAGATTGAAAGCCATCTATAGACTCCGATTTGAACACACGACAGTTA
TGCTCTGTCGTGTTTTACATGTCAATCGTTCCACCTACTATAACTTCATAAACAAGAGGCCTTCTAAGCGTGAAATAGAAAATCAACGCTTGAGAAAATT
ACTCCTTGAGATTTATATGAAAGCCAAGAAAAGAATTGGAACGAGAGCTTTTAAAATCATTCTTCTGCGTGATTATGGCGTTAATATTTCTGAAGGCCGT
ATCTTAAGACTTCTCAAGTCTATGACACTCCCTAAAATGTCAACCATCAAACCTCGTTTTAAATCAAATAAATCTCCTGTATTTTCTTCTGATAATCTGC
TTAAACAAGAATTTAACCCGAACTCCCCAAATCAAGTTTGGACAACAGATTTCACTTATATCTCTATAGGACCTAAGCGACATGTTTATCTCTGTGCTAT
TCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATAGGATTGATGCCAAGCTCGCCTGTGACACCTTAGAAATAGCTATAAATAAGAGG
AAACCTAAGGAACCAATTATTTTTCATTCGGATCAAGGAAGCCAATTTAAATCAGCTTCCTTTAGAAAGTTATTAGATGAGCATCAATTGCTTGCTTCTT
ACTCCAAGCCTGGATATCCTTATGATAATGCCGTCACTGAGGTCTTTTTCAAGTATCTTAAACAACGAGAAATTAATCGCAGAACTTATCACTCCATTCA
AGAAGTTCAACTCTCTTGCTTTGAATACATCGAACAATTTTATAACAATTATAATCCTCATTCCGCCAACAATGGTTTAACTCCAAATCAGAAAGAGAAA
ATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTAGTCCA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1158 bp385 aa791236+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSGFKRYDEDFKQSLVNLYQTGKTQTELCKDYGVSSSALAKWIKQYSQVRLEDNTVLTAKPDFKNYKKGMPARGRKSDLKKSECHIHAKLQVRLKAIYRL
RFEHTTVMLCRVLHVNRSTYYNFINKRPSKREIENQRLRKLLLEIYMKAKKRIGTRAFKIILLRDYGVNISEGRILRLLKSMTLPKMSTIKPRFKSNKSP
VFSSDNLLKQEFNPNSPNQVWTTDFTYISIGPKRHVYLCAILDLYSRKCIAWKVSDRIDAKLACDTLEIAINKRKPKEPIIFHSDQGSQFKSASFRKLLD
EHQLLASYSKPGYPYDNAVTEVFFKYLKQREINRRTYHSIQEVQLSCFEYIEQFYNNYNPHSANNGLTPNQKEKIILRKYSSFCV

 

Blast result :
Comments
IS-LL6 is 55%aa similar with IS1501 ORF2.
References
1] Kiewiet,R., Seegers,J., Venema,G. and Bron,S. (1996) Direct submission GenBank.