ISLdl1
- Family ISL3
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| AJ302652 | ND | Lactobacillus delbrueckii | Lactobacillus delbrueckii subsp. lactis Lactobacillus delbrueckii subsp. bulgaricus |
DNA section
IS Length : 1508 bp
Ends
IR Length : 24/26
IRL : GGTTCAGTATAAATTCTTGTGTAAATAGAAAATAGGCAACAAAAAAAGAA
IRR : GGTTCAGTATAAAAACTTGTGTAAATGACTGAGAGACTTAGGAAGCTTTC
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|
DNA sequence
GGTTCAGTATAAATTCTTGTGTAAATAGAAAATAGGCAACAAAAAAAGAAGGGTTGCCCCTTACAATGTTAATAACGACAAAAACACAGGAGCCCTTCTT
ACTATGAATTATACAGAACTGTCAGTTGCTACTCAAGATGTTATGCCTAACAAAGGTGTCTTATTCTTTAAATCAGGTCTTTCCGACTTTATTCAAGTTG
GCGAGCCAATTCAAAATGAAGATGGATTAACCTTTGTAGGAAAGCTAGATGAGTGTGGTGATACTTTCTGTCCTAATTGCTCAAGAAAGCTAGTTAAAAA
TGGGTCTTTAGAATCTACTCTTAAGCACGTCGCTATTGGTGGAATACACACCAATATCAGAGTGTCCTATGCACGTTTTCGTTGTCTTAACATTGATTGC
CAATTCAACACTAGAAGCCAGTCTATCCCTTTTAAAGCTGATGGTTATCGCATCACCAAACCTTTAAAAGAATACACTGAGAAACTGTTAAGCTATGGCC
TTACTCTAAAGGCAGTGGCTTGGCTTACTGGCTTGGACAAGATGACTGTAAAGTCAATTCACAAGTCTCTTCTGCTGTCTAAATTTACAACTGATGGCAA
GACACTCATAAAACCTGAAAGGCAGGCAAAATACTTAGCCATTGATGAGTTTAAGCTCCACGATGGCCATAAGTACGCCACCGCAATCATAGACTGGGAA
ACAGGGTATATTCTCTACTTAGCCCATGGCAAGAAGAAAGCCGTTGTTTTCGAGTTTATGGATCATGTTGCCGATGAGTGGATGTCAAAAGTTGAGGCGG
TGGCTTGCGACATGAATTCAGACTTCGAAGAAGCTTTTAAAGGGCGCTACCCCAAGCTAGACATCGTCTATGATCGCTTCCACATTATCAAGAATTTCAA
CGATAAAGTGGTTTCAGAGATCCGAAAAGATGAACAAAGACGGCTGGCTGAGGAAGGCTCTCCAGAAGCTGCTAAGTTGCTTAAGAATTCACGTTACATC
TTGATGTCTAAAAGATCCACATTAGTCCAGAAGGACGAGGACGCCCGCAAAGACAAGCTAGTGTCTACTGCTGGTGAAATATTCAATACACCGGAAATAA
AGGCTCATGGTGGTAATGAAGTCTGGTATGACGAGCTATTGGAAGAAAACAAGCTCTTCTTCACAATAGATCTCGTTAAAGACCTGCTAGACCAAGCATA
CAACTCACATGACGAAGTAGAAATGTGCGTCAGACTAGAAGAGATCATAGATATCTGTAAGGCAACTAAAAATAGTCACTTTATTTGGTTTGCGCGTCTC
TTATACCGCCATTTGAGAGGGATCTACACGTTTGCCAAATACGGGATATCAACTGGCAAACTTGAGGGTATTAACAATAAGATCAAGACCGAGAGACGTA
AAGGGTATGGGTATCCAGATGATGAATACTTCTTCCTGCGGTTAATGGAACTATCGCGGAAAGCTTCCTAAGTCTCTCAGTCATTTACACAAGTTTTTAT
ACTGAACC
ACTATGAATTATACAGAACTGTCAGTTGCTACTCAAGATGTTATGCCTAACAAAGGTGTCTTATTCTTTAAATCAGGTCTTTCCGACTTTATTCAAGTTG
GCGAGCCAATTCAAAATGAAGATGGATTAACCTTTGTAGGAAAGCTAGATGAGTGTGGTGATACTTTCTGTCCTAATTGCTCAAGAAAGCTAGTTAAAAA
TGGGTCTTTAGAATCTACTCTTAAGCACGTCGCTATTGGTGGAATACACACCAATATCAGAGTGTCCTATGCACGTTTTCGTTGTCTTAACATTGATTGC
CAATTCAACACTAGAAGCCAGTCTATCCCTTTTAAAGCTGATGGTTATCGCATCACCAAACCTTTAAAAGAATACACTGAGAAACTGTTAAGCTATGGCC
TTACTCTAAAGGCAGTGGCTTGGCTTACTGGCTTGGACAAGATGACTGTAAAGTCAATTCACAAGTCTCTTCTGCTGTCTAAATTTACAACTGATGGCAA
GACACTCATAAAACCTGAAAGGCAGGCAAAATACTTAGCCATTGATGAGTTTAAGCTCCACGATGGCCATAAGTACGCCACCGCAATCATAGACTGGGAA
ACAGGGTATATTCTCTACTTAGCCCATGGCAAGAAGAAAGCCGTTGTTTTCGAGTTTATGGATCATGTTGCCGATGAGTGGATGTCAAAAGTTGAGGCGG
TGGCTTGCGACATGAATTCAGACTTCGAAGAAGCTTTTAAAGGGCGCTACCCCAAGCTAGACATCGTCTATGATCGCTTCCACATTATCAAGAATTTCAA
CGATAAAGTGGTTTCAGAGATCCGAAAAGATGAACAAAGACGGCTGGCTGAGGAAGGCTCTCCAGAAGCTGCTAAGTTGCTTAAGAATTCACGTTACATC
TTGATGTCTAAAAGATCCACATTAGTCCAGAAGGACGAGGACGCCCGCAAAGACAAGCTAGTGTCTACTGCTGGTGAAATATTCAATACACCGGAAATAA
AGGCTCATGGTGGTAATGAAGTCTGGTATGACGAGCTATTGGAAGAAAACAAGCTCTTCTTCACAATAGATCTCGTTAAAGACCTGCTAGACCAAGCATA
CAACTCACATGACGAAGTAGAAATGTGCGTCAGACTAGAAGAGATCATAGATATCTGTAAGGCAACTAAAAATAGTCACTTTATTTGGTTTGCGCGTCTC
TTATACCGCCATTTGAGAGGGATCTACACGTTTGCCAAATACGGGATATCAACTGGCAAACTTGAGGGTATTAACAATAAGATCAAGACCGAGAGACGTA
AAGGGTATGGGTATCCAGATGATGAATACTTCTTCCTGCGGTTAATGGAACTATCGCGGAAAGCTTCCTAAGTCTCTCAGTCATTTACACAAGTTTTTAT
ACTGAACC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1368 bp | 455 aa | 104 | 1471 | + | No |
Chemistry : Unknow
ORF sequence :
MNYTELSVATQDVMPNKGVLFFKSGLSDFIQVGEPIQNEDGLTFVGKLDECGDTFCPNCSRKLVKNGSLESTLKHVAIGGIHTNIRVSYARFRCLNIDCQ
FNTRSQSIPFKADGYRITKPLKEYTEKLLSYGLTLKAVAWLTGLDKMTVKSIHKSLLLSKFTTDGKTLIKPERQAKYLAIDEFKLHDGHKYATAIIDWET
GYILYLAHGKKKAVVFEFMDHVADEWMSKVEAVACDMNSDFEEAFKGRYPKLDIVYDRFHIIKNFNDKVVSEIRKDEQRRLAEEGSPEAAKLLKNSRYIL
MSKRSTLVQKDEDARKDKLVSTAGEIFNTPEIKAHGGNEVWYDELLEENKLFFTIDLVKDLLDQAYNSHDEVEMCVRLEEIIDICKATKNSHFIWFARLL
YRHLRGIYTFAKYGISTGKLEGINNKIKTERRKGYGYPDDEYFFLRLMELSRKAS
FNTRSQSIPFKADGYRITKPLKEYTEKLLSYGLTLKAVAWLTGLDKMTVKSIHKSLLLSKFTTDGKTLIKPERQAKYLAIDEFKLHDGHKYATAIIDWET
GYILYLAHGKKKAVVFEFMDHVADEWMSKVEAVACDMNSDFEEAFKGRYPKLDIVYDRFHIIKNFNDKVVSEIRKDEQRRLAEEGSPEAAKLLKNSRYIL
MSKRSTLVQKDEDARKDKLVSTAGEIFNTPEIKAHGGNEVWYDELLEENKLFFTIDLVKDLLDQAYNSHDEVEMCVRLEEIIDICKATKNSHFIWFARLL
YRHLRGIYTFAKYGISTGKLEGINNKIKTERRKGYGYPDDEYFFLRLMELSRKAS
Blast result :
Comments
ISLdl1 is 49% aa similar to ISRso15.
Additionnal Accession number : AY040217 . This sequence is 99% DNA (G instead of(io) C position 57, G io A pos.91, A io G pos. 767, G io C pos.771 and T io C pos. 1162) and aa (IG instead of VA at position 222-223) similar to the sequence described in database.
Additionnal Accession number : AY040217 . This sequence is 99% DNA (G instead of(io) C position 57, G io A pos.91, A io G pos. 767, G io C pos.771 and T io C pos. 1162) and aa (IG instead of VA at position 222-223) similar to the sequence described in database.
References
1] Alatossava,T. (2000) Direct submission GenBank
2] Germond, J.-E. and Lapierre, L. (2001) Direct submission GenBank
3] Lapierre,L., Mollet,B. and Germond,J.E. (2002) J. Bacteriol. 184 (4), 928-935
2] Germond, J.-E. and Lapierre, L. (2001) Direct submission GenBank
3] Lapierre,L., Mollet,B. and Germond,J.E. (2002) J. Bacteriol. 184 (4), 928-935