ISL6
- Family IS3
- Group IS150
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AY040215 | ND | Lactobacillus delbrueckii | Lactobacillus delbrueckii subsp. bulgaricus |
DNA section
IS Length : 1458 bp
Ends
IR Length : 21/25
IRL : GATATGACCCCCGAAATTAGGACACTAATTTCGGGGTTTATTTTCATGAC
IRR : TGATGTGACCCCCAAAATTGGGACAATTTAGTATTACGCCGTTAAGGTTG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
NNNNNNNNNN | CACT | NNNNNNNNNN | 4 |
DNA sequence
GATATGACCCCCGAAATTAGGACACTAATTTCGGGGTTTATTTTCATGACTAAATACACTAAAGAAATCAAACTTGCTATCTACCACGAATGGGTAGACG
ACCACAGAAGAGGCACCTACCTTAGCCAAAAATATGGGATGGGGCGTGGAGGTATCCATTATTTGGTAGACTTGATCCAAAAGCATGGTGAAGATATTCT
GGATCGACCTCAACAGAAATATACTGCTAATTTCAAGCTTGCTGCCATTGATAGAGTTCTGCTAGGCGGTGAAGCACTTAGCCAGGTTTCTCTAGACTTA
GGGCTTACAAATACAGGAATTCTTGCAAATTGGCTTCGCTCTTTTAAAGAAAGCGGGTATACTGTCATTACCAAGAAGAAAGGTAGACCACCCAAGAATG
CCCAAAAGCAAGGACAAACAACGGATCAAAGAGCTGGAAGAGCAGGTAAAGAGGCTTACAGTCGAGCTTGCATACATAAAAAAATTGGAGGCCTTAATTC
AAGAACGGAAGAGCCAAGAAAAGAAGAATTAGCTCGTGCAATCACTGAATTAAGGCAAGAATTGCGGCTTAGCGTTAAGTACATTATCGACGTTATCAAT
GCCAACCCTGGATTGCCTCATATCTCAAGAAGTAACTACTACTACCAAACCCATAAGCCTGATAAGGATTCTGGTAACCAGAAGCTGATGGATAGAATCA
AAGAGATCTTTCTTGAACACAGCCGACGCTATGGGTACCGGCGAATCTACGGACAGCTTCGCCGGGAAGTCTATGAGATCAACCATAAGAAGGTGCAGAG
GCTCATGCAAAAGATGGGCTTATTCGCCATCTCAATCCGCAAGAAACGCAAATACAGCAGCTATTACGGCGTTCAAGGCAAGATCAAGCCAGACTTAATC
AAGCGCAATTTTTACGCAATTATTCCTGACAGACATTGGTTTACTGACGTGACTGAATTCCATCTTAAAGATCAAAAGTTCTACCTTTCTCCAATTATCG
ATGGTTGTACCCAAGAAATCATCTCCTACAACATTTCTAGGCACCCAGACCTTAAGCAAGTGATGACCATGCTAGATGACGCATTTGAGAAGCACCCGGC
TCTTAACGGGCTTATTTTCCACTCAGACCGTGGCTGGCAATATCAGCACCAAGCATATCAAGCCGCTCTGGCTAACAGAGGGATCGATCAAAGTATGTCC
AGGTTGGGTAATTCTCTTGATGACGGCTTAATGGAGGGCTTCTTCGGCATTCTTAAGCGGGAGATGTTCTACGGCCAAGAACATAAATACAAGGACCTAA
ATGAGCTTGAGCAAGCTATTCACAAATACATCGATTACTACAACAACGTAAGAATCAAGACAGGACGAAAAAACATGACCCCGATTGAATATCGGAATCA
TGTTTTAACAACCTTAACGGCGTAATACTAAATTGTCCCAATTTTGGGGGTCACATCA
ACCACAGAAGAGGCACCTACCTTAGCCAAAAATATGGGATGGGGCGTGGAGGTATCCATTATTTGGTAGACTTGATCCAAAAGCATGGTGAAGATATTCT
GGATCGACCTCAACAGAAATATACTGCTAATTTCAAGCTTGCTGCCATTGATAGAGTTCTGCTAGGCGGTGAAGCACTTAGCCAGGTTTCTCTAGACTTA
GGGCTTACAAATACAGGAATTCTTGCAAATTGGCTTCGCTCTTTTAAAGAAAGCGGGTATACTGTCATTACCAAGAAGAAAGGTAGACCACCCAAGAATG
CCCAAAAGCAAGGACAAACAACGGATCAAAGAGCTGGAAGAGCAGGTAAAGAGGCTTACAGTCGAGCTTGCATACATAAAAAAATTGGAGGCCTTAATTC
AAGAACGGAAGAGCCAAGAAAAGAAGAATTAGCTCGTGCAATCACTGAATTAAGGCAAGAATTGCGGCTTAGCGTTAAGTACATTATCGACGTTATCAAT
GCCAACCCTGGATTGCCTCATATCTCAAGAAGTAACTACTACTACCAAACCCATAAGCCTGATAAGGATTCTGGTAACCAGAAGCTGATGGATAGAATCA
AAGAGATCTTTCTTGAACACAGCCGACGCTATGGGTACCGGCGAATCTACGGACAGCTTCGCCGGGAAGTCTATGAGATCAACCATAAGAAGGTGCAGAG
GCTCATGCAAAAGATGGGCTTATTCGCCATCTCAATCCGCAAGAAACGCAAATACAGCAGCTATTACGGCGTTCAAGGCAAGATCAAGCCAGACTTAATC
AAGCGCAATTTTTACGCAATTATTCCTGACAGACATTGGTTTACTGACGTGACTGAATTCCATCTTAAAGATCAAAAGTTCTACCTTTCTCCAATTATCG
ATGGTTGTACCCAAGAAATCATCTCCTACAACATTTCTAGGCACCCAGACCTTAAGCAAGTGATGACCATGCTAGATGACGCATTTGAGAAGCACCCGGC
TCTTAACGGGCTTATTTTCCACTCAGACCGTGGCTGGCAATATCAGCACCAAGCATATCAAGCCGCTCTGGCTAACAGAGGGATCGATCAAAGTATGTCC
AGGTTGGGTAATTCTCTTGATGACGGCTTAATGGAGGGCTTCTTCGGCATTCTTAAGCGGGAGATGTTCTACGGCCAAGAACATAAATACAAGGACCTAA
ATGAGCTTGAGCAAGCTATTCACAAATACATCGATTACTACAACAACGTAAGAATCAAGACAGGACGAAAAAACATGACCCCGATTGAATATCGGAATCA
TGTTTTAACAACCTTAACGGCGTAATACTAAATTGTCCCAATTTTGGGGGTCACATCA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1263 bp | 420 aa | 163 | 1425 | + | No |
Chemistry : DDE
ORF sequence :
MVDLIQKHGEDILDRPQQKYTANFKLAAIDRVLLGGEALSQVSLDLGLTNTGILANWLRSFKESGYTVITKKKGRPPKNAQKQGQTTDQRAGRAGKEAYS
RACIHKKIGGLNSRTEEPRKEELARAITELRQELRLSVKYIIDVINANPGLPHISRSNYYYQTHKPDKDSGNQKLMDRIKEIFLEHSRRYGYRRIYGQLR
REVYEINHKKVQRLMQKMGLFAISIRKKRKYSSYYGVQGKIKPDLIKRNFYAIIPDRHWFTDVTEFHLKDQKFYLSPIIDGCTQEIISYNISRHPDLKQV
MTMLDDAFEKHPALNGLIFHSDRGWQYQHQAYQAALANRGIDQSMSRLGNSLDDGLMEGFFGILKREMFYGQEHKYKDLNELEQAIHKYIDYYNNVRIKT
GRKNMTPIEYRNHVLTTLTA
RACIHKKIGGLNSRTEEPRKEELARAITELRQELRLSVKYIIDVINANPGLPHISRSNYYYQTHKPDKDSGNQKLMDRIKEIFLEHSRRYGYRRIYGQLR
REVYEINHKKVQRLMQKMGLFAISIRKKRKYSSYYGVQGKIKPDLIKRNFYAIIPDRHWFTDVTEFHLKDQKFYLSPIIDGCTQEIISYNISRHPDLKQV
MTMLDDAFEKHPALNGLIFHSDRGWQYQHQAYQAALANRGIDQSMSRLGNSLDDGLMEGFFGILKREMFYGQEHKYKDLNELEQAIHKYIDYYNNVRIKT
GRKNMTPIEYRNHVLTTLTA
Blast result :
Comments
ISL6 is 66% aa similar to IS861 and 55% to IS1221.
ISL6 was localized exactly in the rho-independant terminator of lacA.
A "T" is missing at the beginning of the sequence ...
ISL6 was localized exactly in the rho-independant terminator of lacA.
A "T" is missing at the beginning of the sequence ...
References
1] Lapierre,L., Mollet,B. and Germond,J.E. (2002) J. Bacteriol. 184 (4), 928-935