ISSphsp2
- Family IS3
- Group IS150
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Sphingobium sp. | Sphingobium sp. Sphingobium sp. SA2 |
DNA section
IS Length : 1523 bp
Ends
IR Length : 20/26
IRL : TGTCCGCCGTCAGCACCAATGGCACAGATTTGAGGTTGTGATCTAAGGAG
IRR : TGTCCGTCGTCAGAACATTCGGCACAACTCGCGGCGTAGATTAGCGGAGT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GCCCGGTGAC | GCTCGTCCTC | 0 | |
TGAATCAGGC | GAGCCAATGT | 0 |
DNA sequence
TGTCCGCCGTCAGCACCAATGGCACAGATTTGAGGTTGTGATCTAAGGAGGATCTGGGCTTCGTCGTAGTGACGAAGGAACGAAGATGAAGCCCAGATCC
TCCAATGTAAAATCGCCCGCCAAGGCCCCAGCAGAGCGGGTAGTGAAGGACATCCGCCGACAGACCCGGCGCCACTTTTCGGCCGAGGACAAGATCCGCA
TCGTGCTGGATGGCCTGCGCGGGGAAGACAGCATCGCCGAGCTATGCCGCAAGGAAGGCATTGCCCAGAGCCTGTATTACACCTGGTCGAAGGAGTTCAT
GGAAGCTGGCAAGCGCCGCCTGGCCGGCGACACCGCCCGTGCCGCGACCACCGGAGAGGTCCAGGACCTGCGCCGCGAAACCCGGGCCCTGAAGGAATGC
GTGGCCGATCTGACACTGGAAAACCGTCTGCTCAAAAAAAGCATGATCGCGGATGGGGGCAACGACGAATGAGGTATCCCGCATCCGAGAAGCTCGAGAT
CATCAGAACCGTCGAGCAGTCGCACCTGTCGGCCAAGCGCACGCTGGACCAACTCGGCATCCCTCGTCGGACATTCTACCGCTGGTATGATCGCTACCTC
GAAGGCGGGCCGGAGGCGTTGGAAGATCGGCCATCGGCGCCGAGCCGGGTGTGGAACCGCATCCCGGCGGGCATCCACGACCAGATCATCGAGCTGGCGC
TGGAACAGTCTGAGCTGAGCCCCCGGGAACTGGCCGTGCGCTTCACCGATGGGCAGCGCTACTTCGTGTCGGAATCCACGGTTTACCGCCTGTTGAAGGC
CCGCGACCTGATCACCAGCCCGGCCTATGTCGTGATCAAGGCTGCCGATCAGTTCCACACGAAAACCACGCGGCCGAACGAGATGTGGCAGACCGACTTC
ACCTACTTCAAGATCATCGGGTGGGGCTGGATGTATCTGTCGACCGTGCTCGACGACTTCTCGCGCTACATCATCGCCTGGAAGCTGTGCACCAACATGC
GAGCCGAGGACGTCACCGACACGCTGGACCTCGCCCTGGCGGCTTCTGGTTGCGACAGCGCCACGGTGCTGCACAAACCCCGGCTACTCAGCGATAATGG
CCCCAGCTACATCGCGGGTGAGCTGGCGGAATACATCGAGGCCCGGAAGATGAGCCATGTCCGCGGCGCCCCGTGTCATCCCCAAACCCAGGGCAAGATC
GAGCGCTGGCACCAGACCCTGAAAAACCGCATCTTGCTGGAAAACTACTTCCTGCCCGGCGACCTCGAAGCTCACATCGAGGCCTTCGTCGAGCACTACA
ATCACCAGCGATACCACGAGAGCCTGGCCAATGTGACGCCTGCCGACGCCTACTTCGGCAGGGCTCCGGCAATCATCAAACTGCGCGAAAGGATCAAGCG
ACAGACCATCGAACATCGGCGCTTGCAGCACCGCAAGTTCGCCGCCTAACATCAACCCCCTGACGAGGTCCGCACTCCGCTAATCTACGCCGCGAGTTGT
GCCGAATGTTCTGACGACGGACA
TCCAATGTAAAATCGCCCGCCAAGGCCCCAGCAGAGCGGGTAGTGAAGGACATCCGCCGACAGACCCGGCGCCACTTTTCGGCCGAGGACAAGATCCGCA
TCGTGCTGGATGGCCTGCGCGGGGAAGACAGCATCGCCGAGCTATGCCGCAAGGAAGGCATTGCCCAGAGCCTGTATTACACCTGGTCGAAGGAGTTCAT
GGAAGCTGGCAAGCGCCGCCTGGCCGGCGACACCGCCCGTGCCGCGACCACCGGAGAGGTCCAGGACCTGCGCCGCGAAACCCGGGCCCTGAAGGAATGC
GTGGCCGATCTGACACTGGAAAACCGTCTGCTCAAAAAAAGCATGATCGCGGATGGGGGCAACGACGAATGAGGTATCCCGCATCCGAGAAGCTCGAGAT
CATCAGAACCGTCGAGCAGTCGCACCTGTCGGCCAAGCGCACGCTGGACCAACTCGGCATCCCTCGTCGGACATTCTACCGCTGGTATGATCGCTACCTC
GAAGGCGGGCCGGAGGCGTTGGAAGATCGGCCATCGGCGCCGAGCCGGGTGTGGAACCGCATCCCGGCGGGCATCCACGACCAGATCATCGAGCTGGCGC
TGGAACAGTCTGAGCTGAGCCCCCGGGAACTGGCCGTGCGCTTCACCGATGGGCAGCGCTACTTCGTGTCGGAATCCACGGTTTACCGCCTGTTGAAGGC
CCGCGACCTGATCACCAGCCCGGCCTATGTCGTGATCAAGGCTGCCGATCAGTTCCACACGAAAACCACGCGGCCGAACGAGATGTGGCAGACCGACTTC
ACCTACTTCAAGATCATCGGGTGGGGCTGGATGTATCTGTCGACCGTGCTCGACGACTTCTCGCGCTACATCATCGCCTGGAAGCTGTGCACCAACATGC
GAGCCGAGGACGTCACCGACACGCTGGACCTCGCCCTGGCGGCTTCTGGTTGCGACAGCGCCACGGTGCTGCACAAACCCCGGCTACTCAGCGATAATGG
CCCCAGCTACATCGCGGGTGAGCTGGCGGAATACATCGAGGCCCGGAAGATGAGCCATGTCCGCGGCGCCCCGTGTCATCCCCAAACCCAGGGCAAGATC
GAGCGCTGGCACCAGACCCTGAAAAACCGCATCTTGCTGGAAAACTACTTCCTGCCCGGCGACCTCGAAGCTCACATCGAGGCCTTCGTCGAGCACTACA
ATCACCAGCGATACCACGAGAGCCTGGCCAATGTGACGCCTGCCGACGCCTACTTCGGCAGGGCTCCGGCAATCATCAAACTGCGCGAAAGGATCAAGCG
ACAGACCATCGAACATCGGCGCTTGCAGCACCGCAAGTTCGCCGCCTAACATCAACCCCCTGACGAGGTCCGCACTCCGCTAATCTACGCCGCGAGTTGT
GCCGAATGTTCTGACGACGGACA
Recoding section
- Recoding by frameshift
- Frame -1
- Type translational
- Experimentally demonstrated No
Stimulators :
- Shine-Dalgarno sequence :
- Secondary structure :
Recoding motif :
Protein section
ORF number : 3
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
387 bp | 128 aa | 86 | 472 | + | No |
Description : First part of the transposase
ORF sequence :
MKPRSSNVKSPAKAPAERVVKDIRRQTRRHFSAEDKIRIVLDGLRGEDSIAELCRKEGIAQSLYYTWSKEFMEAGKRRLAGDTARAATTGEVQDLRRETR
ALKECVADLTLENRLLKKSMIADGGNDE
ALKECVADLTLENRLLKKSMIADGGNDE
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1377 bp | 458 aa | 73 | 1449 | - | Yes |
Description : Second part of the transposase
ORF sequence :
RRNEDEAQILQCKIARQGPSRAGSEGHPPTDPAPLFGRGQDPHRAGWPARGRQHRRAMPQGRHCPEPVLHLVEGVHGSWQAPPGRRHRPCRDHRRGPGPA
PRNPGPEGMRGRSDTGKPSAQKKHDRGWGQRRMRYPASEKLEIIRTVEQSHLSAKRTLDQLGIPRRTFYRWYDRYLEGGPEALEDRPSAPSRVWNRIPAG
IHDQIIELALEQSELSPRELAVRFTDGQRYFVSESTVYRLLKARDLITSPAYVVIKAADQFHTKTTRPNEMWQTDFTYFKIIGWGWMYLSTVLDDFSRYI
IAWKLCTNMRAEDVTDTLDLALAASGCDSATVLHKPRLLSDNGPSYIAGELAEYIEARKMSHVRGAPCHPQTQGKIERWHQTLKNRILLENYFLPGDLEA
HIEAFVEHYNHQRYHESLANVTPADAYFGRAPAIIKLRERIKRQTIEHRRLQHRKFAA
PRNPGPEGMRGRSDTGKPSAQKKHDRGWGQRRMRYPASEKLEIIRTVEQSHLSAKRTLDQLGIPRRTFYRWYDRYLEGGPEALEDRPSAPSRVWNRIPAG
IHDQIIELALEQSELSPRELAVRFTDGQRYFVSESTVYRLLKARDLITSPAYVVIKAADQFHTKTTRPNEMWQTDFTYFKIIGWGWMYLSTVLDDFSRYI
IAWKLCTNMRAEDVTDTLDLALAASGCDSATVLHKPRLLSDNGPSYIAGELAEYIEARKMSHVRGAPCHPQTQGKIERWHQTLKNRILLENYFLPGDLEA
HIEAFVEHYNHQRYHESLANVTPADAYFGRAPAIIKLRERIKRQTIEHRRLQHRKFAA
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1364 bp | 453 aa | 86 | 1449 | + | Yes |
Chemistry : DDE
ORF sequence :
MKPRSSNVKSPAKAPAERVVKDIRRQTRRHFSAEDKIRIVLDGLRGEDSIAELCRKEGIAQSLYYTWSKEFMEAGKRRLAGDTARAATTGEVQDLRRETR
ALKECVADLTLENRLLKKHDRGWGQRRMRYPASEKLEIIRTVEQSHLSAKRTLDQLGIPRRTFYRWYDRYLEGGPEALEDRPSAPSRVWNRIPAGIHDQI
IELALEQSELSPRELAVRFTDGQRYFVSESTVYRLLKARDLITSPAYVVIKAADQFHTKTTRPNEMWQTDFTYFKIIGWGWMYLSTVLDDFSRYIIAWKL
CTNMRAEDVTDTLDLALAASGCDSATVLHKPRLLSDNGPSYIAGELAEYIEARKMSHVRGAPCHPQTQGKIERWHQTLKNRILLENYFLPGDLEAHIEAF
VEHYNHQRYHESLANVTPADAYFGRAPAIIKLRERIKRQTIEHRRLQHRKFAA
ALKECVADLTLENRLLKKHDRGWGQRRMRYPASEKLEIIRTVEQSHLSAKRTLDQLGIPRRTFYRWYDRYLEGGPEALEDRPSAPSRVWNRIPAGIHDQI
IELALEQSELSPRELAVRFTDGQRYFVSESTVYRLLKARDLITSPAYVVIKAADQFHTKTTRPNEMWQTDFTYFKIIGWGWMYLSTVLDDFSRYIIAWKL
CTNMRAEDVTDTLDLALAASGCDSATVLHKPRLLSDNGPSYIAGELAEYIEARKMSHVRGAPCHPQTQGKIERWHQTLKNRILLENYFLPGDLEAHIEAF
VEHYNHQRYHESLANVTPADAYFGRAPAIIKLRERIKRQTIEHRRLQHRKFAA
Blast result :
Comments
ISSphsp2 is 95% aa similar to ISPko4.
The third ORF is the putative ORFAB transposase reconstructed in silico by possible -1 frameshift.
The third ORF is the putative ORFAB transposase reconstructed in silico by possible -1 frameshift.
References
1] Maurizio Labbate (2021) Direct submission.