ISLmo19
- Family IS6
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP068981 | ND | Listeria monocytogenes | Listeria monocytogenes Listeria monocytogenes strain B-33043 |
DNA section
IS Length : 810 bp
Ends
IR Length : 19
IRL : GGTTCTGTTGCAAAGTTTTCTGATAAACTGATTTTAAGGTAAAATGAATG
IRR : GGTTCTGTTGCAAAGTTTTAAATAAAGAATAAAATCCCTTACGGTATCTA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
Ttctatacgatcaac | aaatttgaaatgtat | 0 |
DNA sequence
GGTTCTGTTGCAAAGTTTTCTGATAAACTGATTTTAAGGTAAAATGAATGGAAAAGATAGCTTGGAGGAATCAAGATGGATCATTTTAAAGGCAAGCAAT
TTCAGAAAGATGTGATTATTGTCGCCGTAGGCTACTACCTTCGGTATAATCTTAGCTATCGTGACGTCCAAGAAATCCTATATGACCGTGGCATTAACGT
TTCTCACACCACCATCTACCGCTGGGTACAGGAATATGGAAAACTACTTTACACTATTTGGAAAAAGAAAAATAAACAATCCTTCTATTCGTGGAAGATG
GATGAGACCTATATTAAAATCAAAGGGAAATGGCACTATCTTTATCGAGCAATCGATGCAGATGGTTTAACCTTGGATATTTGGTTACGTAAAAAACGGG
ACACACAAGCAGCCTATGCTTTTCTTAAGCGGTTAGTGAAGCAGTTTGATGAACCGAAGGTTGTAGTCACAGATAAAGCCCCCTCTATTACAAGTGCCTT
TAAGAAACTAAAAGAATACGGCTTTTATCAAGGGACAGAACATCGTACCATTAAATACCTGAATAATTTGATTGAACAAGACCATCGTCCAGTAAAGAGA
CGCAATAAATTCTATCGAAGTTTACGCACTGCCTCTACCACGATTAAAGGCATGGAAGCCATCCGAGGATTATATAAGAAAACCCGAAAAGAAGGCACTC
TCTTCGGGTTTTCGGTCTGTACTGAAATCAAGGTATTATTGGGAATCACAGCTTAAATCATAGATACCGTAAGGGATTTTATTCTTTATTTAAAACTTTG
CAACAGAACC
TTCAGAAAGATGTGATTATTGTCGCCGTAGGCTACTACCTTCGGTATAATCTTAGCTATCGTGACGTCCAAGAAATCCTATATGACCGTGGCATTAACGT
TTCTCACACCACCATCTACCGCTGGGTACAGGAATATGGAAAACTACTTTACACTATTTGGAAAAAGAAAAATAAACAATCCTTCTATTCGTGGAAGATG
GATGAGACCTATATTAAAATCAAAGGGAAATGGCACTATCTTTATCGAGCAATCGATGCAGATGGTTTAACCTTGGATATTTGGTTACGTAAAAAACGGG
ACACACAAGCAGCCTATGCTTTTCTTAAGCGGTTAGTGAAGCAGTTTGATGAACCGAAGGTTGTAGTCACAGATAAAGCCCCCTCTATTACAAGTGCCTT
TAAGAAACTAAAAGAATACGGCTTTTATCAAGGGACAGAACATCGTACCATTAAATACCTGAATAATTTGATTGAACAAGACCATCGTCCAGTAAAGAGA
CGCAATAAATTCTATCGAAGTTTACGCACTGCCTCTACCACGATTAAAGGCATGGAAGCCATCCGAGGATTATATAAGAAAACCCGAAAAGAAGGCACTC
TCTTCGGGTTTTCGGTCTGTACTGAAATCAAGGTATTATTGGGAATCACAGCTTAAATCATAGATACCGTAAGGGATTTTATTCTTTATTTAAAACTTTG
CAACAGAACC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
681 bp | 226 aa | 76 | 756 | + | No |
Chemistry : DDE
ORF sequence :
MDHFKGKQFQKDVIIVAVGYYLRYNLSYRDVQEILYDRGINVSHTTIYRWVQEYGKLLYTIWKKKNKQSFYSWKMDETYIKIKGKWHYLYRAIDADGLTL
DIWLRKKRDTQAAYAFLKRLVKQFDEPKVVVTDKAPSITSAFKKLKEYGFYQGTEHRTIKYLNNLIEQDHRPVKRRNKFYRSLRTASTTIKGMEAIRGLY
KKTRKEGTLFGFSVCTEIKVLLGITA
DIWLRKKRDTQAAYAFLKRLVKQFDEPKVVVTDKAPSITSAFKKLKEYGFYQGTEHRTIKYLNNLIEQDHRPVKRRNKFYRSLRTASTTIKGMEAIRGLY
KKTRKEGTLFGFSVCTEIKVLLGITA
Blast result :
Comments
ISLmo19 is 99% aa similar to IS1216E but only 94% DNA identical.
ISLmo19 was identified by in silico sequence analysis of Listeria monocytogenes plasmids.
ISLmo19 was identified by in silico sequence analysis of Listeria monocytogenes plasmids.
References
1] Chmielowska, C. and Bartosik, D. (2021) Direct submission.