ISSeq4
- Family IS1634
- Group
Isoform Synonym(s) ISSzo4
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_012470 | ND | Streptococcus equi | Streptococcus equi subsp. equi 4047 Streptococcus equi subsp. zooepidemicus H70 Streptococcus equi zooepidemicus MGCS10565 |
DNA section
IS Length : 1916 bp
Ends
IR Length : 16
IRL : CCCGACTTTATCACTTGTTTTAGTCCACACCTTACTCAACCCCTTGGTAG
IRR : CCCGACTTTATCACTTAAAAACAAGTAAAGACCAGCTAACCCCTTGTGTC
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| TTGCTATAAT | AGTCTGGAAA | 0 | |
| AAAAATTTCT | ATTTTGACAG | 0 | |
| TACAAAAGTC | ATT | ATACCATTAA | 3 |
| GCTGCTATTT | ATTATAACAA | 0 | |
| AAAAGCCTTT | ATTATAGCAT | 0 | |
| TGTGTGGTAT | AAT | TAGATTAGGTAA | 3 |
| CTGTTATAAT | AGTGAACAAG | 0 | |
| CTGTTATAAT | AGGCTAAGAA | 0 | |
| ATGCTATAAT | AGTTCACTCT | 0 | |
| ATGCTATAAT | ACGATGCCAT | 0 | |
| ATGGTATAAT | AGTCAAAAGC | 0 | |
| GGCTCAAGCT | ATTATAGCAT | 0 | |
| TTGTTATAAT | ATGCTATGTA | 0 | |
| AGTATTTGCT | ATTATACCAC | 0 |
DNA sequence
CCCGACTTTATCACTTGTTTTAGTCCACACCTTACTCAACCCCTTGGTAGAGTAAGGTTTTTTAATAAATTTTAACGTTTTTTCTTGTTGTGTATGATTA
TATATGTTATAATAAATTATGGCTTTTATTAAAACAACAACGAATAAAGAAGGTAGGACGCATGTCTACCTTGTAGAAGGGTATCGTAAAGATGGTAAGG
TCAAACAGCGTATCCTTAAAAAATTTGGTCTCTTAGATGAGCTTGAATTGGAAGAACCAGGGATTCTTGAGCGTCTTAAGCGCGAAGCTAAAGAAGATAC
TTTAAATAACCCTAAGGTACTCCAGGTTTCCTATGACCTCCTTGCCCCCATGAACCAACCGGATCAATCTTATGGTTGGATGGTTTTGGATAATCTCTTC
GAATCTCTGGGGCTCACAGCCTTTTTAAAGGGTATCAAAACGAAGTCTGAGTATGACTTAGTGCAAGTGCTAAAGCTATTAGTTTTTCAGAGAATTCTCC
GACCAGATAGTAAACTTGCCACCTATGCCTCTCAAGCAGACTTATTTGGCCATTGGGACATCAGCTTAAATGCCATTTATCGCTCCTTGAACAAATTGAA
CACCTTGAAAGATGATCTTCAACATCATCTTCACAAGGTAGTGAGTCAGATGACCAAACGTGAAGCCAGTCTCGTTTTCTACGATGTCACCAATTATTAT
TTTGAGACAGATATTCCAGATAACGAGTTGGTTTCAGAAAATGGAGAGATACTACAAGAAGGGCTTCGAAGACGTGGTCCGAGTAAGGAACACCGTCCAA
AACCCATTGTGCAATTAGGACTCTTTATGGATACCAACGGTATTCCGATTAGCTATAAACTGTTTCGAGGTAATCAAACCGATCCTGTTACCTATCTTCC
AGCGGTTGAGGAAGTCAAAAAACAATTTGGAATTGAGCGGTTAATTGTAGTCGCCGATAAGGCGATGAATAGTATGGCTAATGTTTCAGAAATGCTCAAG
CAAGAAGATGGCTGGCTCTTCTCACAGAAACATCGCGGACGCCGAGGAGCTCCAAAAGATATTCAAGAACACATCCTTGATTCATCGGATTGGCAATTTA
ACCCAGAACTTACCTTCGCTAAGAAATCTTATATCCGTGAACGGAAGTTAGGGAATAAAAAATCTTCCCCAGTGGTTCAAGAGAAGGTTCTCATCACTTG
GTCTAAAAAATATGCCGACCGGGAGCGCATTCGTCGTGAAGGTGCTTTAGACTATGCCAGTCAGTTAACCAATGCGGAGCTTTTTCGTAGAACCAGTAAA
AAGGGAGGCAAGAAATACCTAGAGCTCCAATATTTGGATAAAGAAACTGGCGAGGTTAAACCCTACTCTCCTTTGATTACGATTGATCAAGAACAGGCTG
ATTTTGATGCTCAGTTTGATGGGATTAATGTGCTTGTCACGAGTGAAATAGAGATGACTGATGAGGAGATGTTAAATGCCTATAAAGAGCTAGCCAAGAT
TGAAGATTGTTTCCGTGTGACGAAAACAGAACTGGAAAGTCGTCCTGTTTACGTTTGGACGGAAAAACACATTCAAGCTCACTTTCTAACCTGTTTCATT
GCTTTAGTTCATCTACGCCTCCTTCAACATCAGATAGATTGGCAGATGAGTCCTGAACGTATCATTACTGCCTTAAACAGTGCCAAGGTAACACCGTTAC
AAGATAACTACTACAGACTTCAAGAAAGCCTTGATATGCAGGAGTTAAACAGACTGCTAGGAATTGAATGGGCGAAGGGAATCGTTAAGTTTGAAGAGCT
CAAACATTACGCTAAAAATCCATATACAACACTAAAATAAATTTAAAGACCAGCAAAATCCCTTGGGACACAAGGGGTTAGCTGGTCTTTACTTGTTTTT
AAGTGATAAAGTCGGG
TATATGTTATAATAAATTATGGCTTTTATTAAAACAACAACGAATAAAGAAGGTAGGACGCATGTCTACCTTGTAGAAGGGTATCGTAAAGATGGTAAGG
TCAAACAGCGTATCCTTAAAAAATTTGGTCTCTTAGATGAGCTTGAATTGGAAGAACCAGGGATTCTTGAGCGTCTTAAGCGCGAAGCTAAAGAAGATAC
TTTAAATAACCCTAAGGTACTCCAGGTTTCCTATGACCTCCTTGCCCCCATGAACCAACCGGATCAATCTTATGGTTGGATGGTTTTGGATAATCTCTTC
GAATCTCTGGGGCTCACAGCCTTTTTAAAGGGTATCAAAACGAAGTCTGAGTATGACTTAGTGCAAGTGCTAAAGCTATTAGTTTTTCAGAGAATTCTCC
GACCAGATAGTAAACTTGCCACCTATGCCTCTCAAGCAGACTTATTTGGCCATTGGGACATCAGCTTAAATGCCATTTATCGCTCCTTGAACAAATTGAA
CACCTTGAAAGATGATCTTCAACATCATCTTCACAAGGTAGTGAGTCAGATGACCAAACGTGAAGCCAGTCTCGTTTTCTACGATGTCACCAATTATTAT
TTTGAGACAGATATTCCAGATAACGAGTTGGTTTCAGAAAATGGAGAGATACTACAAGAAGGGCTTCGAAGACGTGGTCCGAGTAAGGAACACCGTCCAA
AACCCATTGTGCAATTAGGACTCTTTATGGATACCAACGGTATTCCGATTAGCTATAAACTGTTTCGAGGTAATCAAACCGATCCTGTTACCTATCTTCC
AGCGGTTGAGGAAGTCAAAAAACAATTTGGAATTGAGCGGTTAATTGTAGTCGCCGATAAGGCGATGAATAGTATGGCTAATGTTTCAGAAATGCTCAAG
CAAGAAGATGGCTGGCTCTTCTCACAGAAACATCGCGGACGCCGAGGAGCTCCAAAAGATATTCAAGAACACATCCTTGATTCATCGGATTGGCAATTTA
ACCCAGAACTTACCTTCGCTAAGAAATCTTATATCCGTGAACGGAAGTTAGGGAATAAAAAATCTTCCCCAGTGGTTCAAGAGAAGGTTCTCATCACTTG
GTCTAAAAAATATGCCGACCGGGAGCGCATTCGTCGTGAAGGTGCTTTAGACTATGCCAGTCAGTTAACCAATGCGGAGCTTTTTCGTAGAACCAGTAAA
AAGGGAGGCAAGAAATACCTAGAGCTCCAATATTTGGATAAAGAAACTGGCGAGGTTAAACCCTACTCTCCTTTGATTACGATTGATCAAGAACAGGCTG
ATTTTGATGCTCAGTTTGATGGGATTAATGTGCTTGTCACGAGTGAAATAGAGATGACTGATGAGGAGATGTTAAATGCCTATAAAGAGCTAGCCAAGAT
TGAAGATTGTTTCCGTGTGACGAAAACAGAACTGGAAAGTCGTCCTGTTTACGTTTGGACGGAAAAACACATTCAAGCTCACTTTCTAACCTGTTTCATT
GCTTTAGTTCATCTACGCCTCCTTCAACATCAGATAGATTGGCAGATGAGTCCTGAACGTATCATTACTGCCTTAAACAGTGCCAAGGTAACACCGTTAC
AAGATAACTACTACAGACTTCAAGAAAGCCTTGATATGCAGGAGTTAAACAGACTGCTAGGAATTGAATGGGCGAAGGGAATCGTTAAGTTTGAAGAGCT
CAAACATTACGCTAAAAATCCATATACAACACTAAAATAAATTTAAAGACCAGCAAAATCCCTTGGGACACAAGGGGTTAGCTGGTCTTTACTTGTTTTT
AAGTGATAAAGTCGGG
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1722 bp | 573 aa | 119 | 1840 | + | No |
Chemistry : DDE
ORF sequence :
MAFIKTTTNKEGRTHVYLVEGYRKDGKVKQRILKKFGLLDELELEEPGILERLKREAKEDTLNNPKVLQVSYDLLAPMNQPDQSYGWMVLDNLFESLGLT
AFLKGIKTKSEYDLVQVLKLLVFQRILRPDSKLATYASQADLFGHWDISLNAIYRSLNKLNTLKDDLQHHLHKVVSQMTKREASLVFYDVTNYYFETDIP
DNELVSENGEILQEGLRRRGPSKEHRPKPIVQLGLFMDTNGIPISYKLFRGNQTDPVTYLPAVEEVKKQFGIERLIVVADKAMNSMANVSEMLKQEDGWL
FSQKHRGRRGAPKDIQEHILDSSDWQFNPELTFAKKSYIRERKLGNKKSSPVVQEKVLITWSKKYADRERIRREGALDYASQLTNAELFRRTSKKGGKKY
LELQYLDKETGEVKPYSPLITIDQEQADFDAQFDGINVLVTSEIEMTDEEMLNAYKELAKIEDCFRVTKTELESRPVYVWTEKHIQAHFLTCFIALVHLR
LLQHQIDWQMSPERIITALNSAKVTPLQDNYYRLQESLDMQELNRLLGIEWAKGIVKFEELKHYAKNPYTTLK
AFLKGIKTKSEYDLVQVLKLLVFQRILRPDSKLATYASQADLFGHWDISLNAIYRSLNKLNTLKDDLQHHLHKVVSQMTKREASLVFYDVTNYYFETDIP
DNELVSENGEILQEGLRRRGPSKEHRPKPIVQLGLFMDTNGIPISYKLFRGNQTDPVTYLPAVEEVKKQFGIERLIVVADKAMNSMANVSEMLKQEDGWL
FSQKHRGRRGAPKDIQEHILDSSDWQFNPELTFAKKSYIRERKLGNKKSSPVVQEKVLITWSKKYADRERIRREGALDYASQLTNAELFRRTSKKGGKKY
LELQYLDKETGEVKPYSPLITIDQEQADFDAQFDGINVLVTSEIEMTDEEMLNAYKELAKIEDCFRVTKTELESRPVYVWTEKHIQAHFLTCFIALVHLR
LLQHQIDWQMSPERIITALNSAKVTPLQDNYYRLQESLDMQELNRLLGIEWAKGIVKFEELKHYAKNPYTTLK
Blast result :
Comments
ISSeq4 is 54% aa similar to ISCsa8.
References
1] ISfinder submission (2012)
2] Holden,M.T., Heather,Z., Paillot,R., Steward,K.F., Webb,K., Ainslie,F., Jourdan,T., Bason,N.C., Holroyd,N.E., Mungall,K., Quail,M.A., Sanders,M., Simmonds,M., Willey,D., Brooks,K., Aanensen,D.M., Spratt,B.G., Jolley,K.A., Maiden,M.C., Kehoe,M., Chanter,N., Bentley,S.D., Robinson,C., Maskell,D.J., Parkhill,J. (2009) PLoS Pathog. 5 (3), E1000346 .
2] Holden,M.T., Heather,Z., Paillot,R., Steward,K.F., Webb,K., Ainslie,F., Jourdan,T., Bason,N.C., Holroyd,N.E., Mungall,K., Quail,M.A., Sanders,M., Simmonds,M., Willey,D., Brooks,K., Aanensen,D.M., Spratt,B.G., Jolley,K.A., Maiden,M.C., Kehoe,M., Chanter,N., Bentley,S.D., Robinson,C., Maskell,D.J., Parkhill,J. (2009) PLoS Pathog. 5 (3), E1000346 .