ISLmo18
- Family IS256
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP031141.1 | ND | Listeria monocytogenes | Listeria monocytogenes Listeria monocytogenes strain NCCP 14714 Listeria monocytogenes strain FORC_049 Listeria monocytogenes strain L2624 |
DNA section
IS Length : 1328 bp
Ends
IR Length : 22/26
IRL : GATAAAGTCCATATAATTGTGTAAAAGCAAAAAGGCCATATGAACGCCTC
IRR : AGTCAAGTCCATAAAATTGTGTAAAATACAGTACACTGTTTTAAAGCTTT
Comments : Ends based on empty insertion sites present in other genomes
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
tttatacgttctgaa | TTAAGGAG | GATtgttcaattggtaat | 8 |
DNA sequence
GATAAAGTCCATATAATTGTGTAAAAGCAAAAAGGCCATATGAACGCCTCTTTACGGTACAATGTTTTTAACCACTAAAAACATACCCAGGAGGCAATCA
TATGACCCAAGTACATTTTACACTGGAAACAGAAGATATTCAAAGTTTAATTGACCAGTCGGTCAAAGATAATGCGGCTAAACAAATTTTACAAACTGTA
TTTAATCAGTTGATGGACGAGCAGCGAACAGATTATATTCAAGCCACAAACTATGAACGATCAGACGATCGAAGAAGCCAACGCAACGGCTATTATGAAA
GAGAATTAACGACTCGTATTGGCTCTCTTGAGTTGAAAGTTCCCCGAACACGCGACGGTGAATTTGCACCGACTGTATTTGAGCGGTATCAACGCAATGA
GAAGGCTTTGTTAGCCTCTATGTTAGAGATGTATATTTCTGGTGTCTCTACACGTAAAGTCTCTCAAATCGTTGAAGAACTATGCGGTAAATCAGTCTCT
AAATCCTTTGTCTCCAGTTTAACTGCCCAGTTAGACCCTATGGTCTCTGAATGGCAAAATCGTTTTCTATCAGACAGGTCTTTCCCTTATGTTATGACAG
ATGTTATCTACATCAAAATCAGAGAGAATCATCGTGTCGTATCTAAAAGCTGCCATATAGCGATTGGCATATCAGAAGATGGAGAGCGTGAGATTATTGG
CTTTATGATTCAAGATGAAGAAAGTGACGAAACTTGGTCTCTCTTCTTCGACTACCTCAAAACCAGAGGGTTAAGTGAAGTGGAAATGGTCATTTCCGAT
GCCCACAAAGGCTTAGTCAAAGCCATCAAGAAGTCATTTACAAACGCTTCATGGCAACGATGCCAGGTTCACTTTATGCGTAATATCCTCAATTGTATCC
CTAAGAAAGATTCAAAACCTTTCAGAGAAGAAGTCAAAGCACTCTTCAAATTTACGGATATTGAAACGGCTCGCAAGGCTAAAAATACTATAGTAAGTGC
CTATAGCGAACAATCAAAATACCATAAAGCCTGTGAAAAACTAGATGAAGGATTCGAAGATGCCTTTCAATACGCCGTTGTCGGTAAAGGTCAATCGAGA
TTAAAAAGCACGAATCTTCTTGAACGGTTAAATGAAGAAGTCAGACGCAGAGAAAAAGTTATCCGAATCTTTCCGAATCACGCCTCTGCCAATCGTTTAA
TCGGTGCAGTTCTTATTGACCGTCACGAAGACTGGCTAAGCTCTACCAGAAAATATATTCAATTTTAACCTATAGGTTAAAGCTTTAAAACAGTGTACTG
TATTTTACACAATTTTATGGACTTGACT
TATGACCCAAGTACATTTTACACTGGAAACAGAAGATATTCAAAGTTTAATTGACCAGTCGGTCAAAGATAATGCGGCTAAACAAATTTTACAAACTGTA
TTTAATCAGTTGATGGACGAGCAGCGAACAGATTATATTCAAGCCACAAACTATGAACGATCAGACGATCGAAGAAGCCAACGCAACGGCTATTATGAAA
GAGAATTAACGACTCGTATTGGCTCTCTTGAGTTGAAAGTTCCCCGAACACGCGACGGTGAATTTGCACCGACTGTATTTGAGCGGTATCAACGCAATGA
GAAGGCTTTGTTAGCCTCTATGTTAGAGATGTATATTTCTGGTGTCTCTACACGTAAAGTCTCTCAAATCGTTGAAGAACTATGCGGTAAATCAGTCTCT
AAATCCTTTGTCTCCAGTTTAACTGCCCAGTTAGACCCTATGGTCTCTGAATGGCAAAATCGTTTTCTATCAGACAGGTCTTTCCCTTATGTTATGACAG
ATGTTATCTACATCAAAATCAGAGAGAATCATCGTGTCGTATCTAAAAGCTGCCATATAGCGATTGGCATATCAGAAGATGGAGAGCGTGAGATTATTGG
CTTTATGATTCAAGATGAAGAAAGTGACGAAACTTGGTCTCTCTTCTTCGACTACCTCAAAACCAGAGGGTTAAGTGAAGTGGAAATGGTCATTTCCGAT
GCCCACAAAGGCTTAGTCAAAGCCATCAAGAAGTCATTTACAAACGCTTCATGGCAACGATGCCAGGTTCACTTTATGCGTAATATCCTCAATTGTATCC
CTAAGAAAGATTCAAAACCTTTCAGAGAAGAAGTCAAAGCACTCTTCAAATTTACGGATATTGAAACGGCTCGCAAGGCTAAAAATACTATAGTAAGTGC
CTATAGCGAACAATCAAAATACCATAAAGCCTGTGAAAAACTAGATGAAGGATTCGAAGATGCCTTTCAATACGCCGTTGTCGGTAAAGGTCAATCGAGA
TTAAAAAGCACGAATCTTCTTGAACGGTTAAATGAAGAAGTCAGACGCAGAGAAAAAGTTATCCGAATCTTTCCGAATCACGCCTCTGCCAATCGTTTAA
TCGGTGCAGTTCTTATTGACCGTCACGAAGACTGGCTAAGCTCTACCAGAAAATATATTCAATTTTAACCTATAGGTTAAAGCTTTAAAACAGTGTACTG
TATTTTACACAATTTTATGGACTTGACT
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1167 bp | 388 aa | 102 | 1268 | + | No |
Chemistry : DDE
ORF sequence :
MTQVHFTLETEDIQSLIDQSVKDNAAKQILQTVFNQLMDEQRTDYIQATNYERSDDRRSQRNGYYERELTTRIGSLELKVPRTRDGEFAPTVFERYQRNE
KALLASMLEMYISGVSTRKVSQIVEELCGKSVSKSFVSSLTAQLDPMVSEWQNRFLSDRSFPYVMTDVIYIKIRENHRVVSKSCHIAIGISEDGEREIIG
FMIQDEESDETWSLFFDYLKTRGLSEVEMVISDAHKGLVKAIKKSFTNASWQRCQVHFMRNILNCIPKKDSKPFREEVKALFKFTDIETARKAKNTIVSA
YSEQSKYHKACEKLDEGFEDAFQYAVVGKGQSRLKSTNLLERLNEEVRRREKVIRIFPNHASANRLIGAVLIDRHEDWLSSTRKYIQF
KALLASMLEMYISGVSTRKVSQIVEELCGKSVSKSFVSSLTAQLDPMVSEWQNRFLSDRSFPYVMTDVIYIKIRENHRVVSKSCHIAIGISEDGEREIIG
FMIQDEESDETWSLFFDYLKTRGLSEVEMVISDAHKGLVKAIKKSFTNASWQRCQVHFMRNILNCIPKKDSKPFREEVKALFKFTDIETARKAKNTIVSA
YSEQSKYHKACEKLDEGFEDAFQYAVVGKGQSRLKSTNLLERLNEEVRRREKVIRIFPNHASANRLIGAVLIDRHEDWLSSTRKYIQF
Blast result :
Comments
ISLmo18 is 90% aa similar to IS1542.
ISLmo18 was identified by in silico sequence analysis of Listeria monocytogenes genomes.
ISLmo18 was identified by in silico sequence analysis of Listeria monocytogenes genomes.
References
1] Chmielowska, C. and Bartosik, D. (2021) Direct submission.