ISLmo18

  • Family IS256
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP031141.1 ND Listeria monocytogenes
Listeria monocytogenes
Listeria monocytogenes strain NCCP 14714
Listeria monocytogenes strain FORC_049
Listeria monocytogenes strain L2624
DNA section
IS Length : 1328 bp

Ends


IR Length : 22/26

IRL : GATAAAGTCCATATAATTGTGTAAAAGCAAAAAGGCCATATGAACGCCTC
IRR : AGTCAAGTCCATAAAATTGTGTAAAATACAGTACACTGTTTTAAAGCTTT

Comments : Ends based on empty insertion sites present in other genomes

Insertion site


Left flankDirect repeatRight flankDR Length
tttatacgttctgaaTTAAGGAGGATtgttcaattggtaat8

DNA sequence

GATAAAGTCCATATAATTGTGTAAAAGCAAAAAGGCCATATGAACGCCTCTTTACGGTACAATGTTTTTAACCACTAAAAACATACCCAGGAGGCAATCA
TATGACCCAAGTACATTTTACACTGGAAACAGAAGATATTCAAAGTTTAATTGACCAGTCGGTCAAAGATAATGCGGCTAAACAAATTTTACAAACTGTA
TTTAATCAGTTGATGGACGAGCAGCGAACAGATTATATTCAAGCCACAAACTATGAACGATCAGACGATCGAAGAAGCCAACGCAACGGCTATTATGAAA
GAGAATTAACGACTCGTATTGGCTCTCTTGAGTTGAAAGTTCCCCGAACACGCGACGGTGAATTTGCACCGACTGTATTTGAGCGGTATCAACGCAATGA
GAAGGCTTTGTTAGCCTCTATGTTAGAGATGTATATTTCTGGTGTCTCTACACGTAAAGTCTCTCAAATCGTTGAAGAACTATGCGGTAAATCAGTCTCT
AAATCCTTTGTCTCCAGTTTAACTGCCCAGTTAGACCCTATGGTCTCTGAATGGCAAAATCGTTTTCTATCAGACAGGTCTTTCCCTTATGTTATGACAG
ATGTTATCTACATCAAAATCAGAGAGAATCATCGTGTCGTATCTAAAAGCTGCCATATAGCGATTGGCATATCAGAAGATGGAGAGCGTGAGATTATTGG
CTTTATGATTCAAGATGAAGAAAGTGACGAAACTTGGTCTCTCTTCTTCGACTACCTCAAAACCAGAGGGTTAAGTGAAGTGGAAATGGTCATTTCCGAT
GCCCACAAAGGCTTAGTCAAAGCCATCAAGAAGTCATTTACAAACGCTTCATGGCAACGATGCCAGGTTCACTTTATGCGTAATATCCTCAATTGTATCC
CTAAGAAAGATTCAAAACCTTTCAGAGAAGAAGTCAAAGCACTCTTCAAATTTACGGATATTGAAACGGCTCGCAAGGCTAAAAATACTATAGTAAGTGC
CTATAGCGAACAATCAAAATACCATAAAGCCTGTGAAAAACTAGATGAAGGATTCGAAGATGCCTTTCAATACGCCGTTGTCGGTAAAGGTCAATCGAGA
TTAAAAAGCACGAATCTTCTTGAACGGTTAAATGAAGAAGTCAGACGCAGAGAAAAAGTTATCCGAATCTTTCCGAATCACGCCTCTGCCAATCGTTTAA
TCGGTGCAGTTCTTATTGACCGTCACGAAGACTGGCTAAGCTCTACCAGAAAATATATTCAATTTTAACCTATAGGTTAAAGCTTTAAAACAGTGTACTG
TATTTTACACAATTTTATGGACTTGACT
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1167 bp388 aa1021268+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MTQVHFTLETEDIQSLIDQSVKDNAAKQILQTVFNQLMDEQRTDYIQATNYERSDDRRSQRNGYYERELTTRIGSLELKVPRTRDGEFAPTVFERYQRNE
KALLASMLEMYISGVSTRKVSQIVEELCGKSVSKSFVSSLTAQLDPMVSEWQNRFLSDRSFPYVMTDVIYIKIRENHRVVSKSCHIAIGISEDGEREIIG
FMIQDEESDETWSLFFDYLKTRGLSEVEMVISDAHKGLVKAIKKSFTNASWQRCQVHFMRNILNCIPKKDSKPFREEVKALFKFTDIETARKAKNTIVSA
YSEQSKYHKACEKLDEGFEDAFQYAVVGKGQSRLKSTNLLERLNEEVRRREKVIRIFPNHASANRLIGAVLIDRHEDWLSSTRKYIQF

 

Blast result :
Comments
ISLmo18 is 90% aa similar to IS1542.
ISLmo18 was identified by in silico sequence analysis of Listeria monocytogenes genomes.
References
1] Chmielowska, C. and Bartosik, D. (2021) Direct submission.