ISEc88

  • Family IS5
  • Group IS903
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
LC602697 ND Escherichia coli
Escherichia coli
Escherichia coli B8 plasmid pB8_IMP1
Klebsiella aerogenes plasmid pMRY13-134EAE_1
Klebsiella pneumoniae plasmid pMRY13-133KPN_2
Enterobacter cloacae B12 plasmid pB12IMP1
DNA section
IS Length : 1048 bp

Ends


IR Length : 15

IRL : GGCTTTGTTGCACAAAGCCAGTCCGCTGAGCTGGTAGCCTCGAGACATGA
IRR : GGCTTTGTTGCACAAGTCGGAAGGCAGACGAGATTACCCCAGCCCCAGAC

Insertion site


Left flankDirect repeatRight flankDR Length
cagaagtgatctgcaccagttcaatattgcagccagctcctgaca9

DNA sequence

GGCTTTGTTGCACAAAGCCAGTCCGCTGAGCTGGTAGCCTCGAGACATGAGTGAACCGAAGGGGTCCAAGGCCCGCTACAAGACCACCAACTGGGCAGAG
TACAACGCCGCGCTCAAAGCCCGAGGGTCGCTGACAATCTGGCTGGACAAAGGCATGCAGTGGTACGCCCCATCCAGCGGCAAACGCGGGCGCCAGCACA
TCTTCTCCAACGCAGCCATCCAGTTCTGTCTGGGCATCAAGTGCCTGTTCGGTCTGGCCCTGCGTCAAAGCCTGGGCATGGTTGAAAGCCTGCTGCGTCT
GGCAGGCCTGGACTGGCGGGTGCCCGACTACAGCACCGTGTGCCGACGCCAGAAGACTTTGCAGGTACAACTGCCCTACCGAGCCAGTACCACCGCACTG
GAACTGCTGGTGGACAGCACCGGCATTCAGTTCCTTGGCGAAGGCGAATGGAAACGCAAGAAGCACGGTGCCGAGTACCGGCGCCAGTGGCGCAAGGTGC
ACCTGGGTATTGATGCCCACACGTTGGAGATCCGGGCCATCGAGGTGACCGACAACAGCGTGGGCGATGCGCCCATGCTGCTCGAGTTGCTGGAGCAGAT
ACCACCCGATGAGCCGATTGCCAGCGTCAGTGGGGACGGTGCCTACGACACCAAGGCGTGCCATGCGGCGATTGCCCAGCGAAATGCGCAGGCGGTGATC
CCCCCGCGCAAGAACGCCCAGACGTGGAAGGCGACCCTGGTGGGAGCGCATGCGCGCAACGAAGCGCTGCGAGCCTGTGACAGATTGGGGCGCAGCATCT
GGAAAAAGTGGAGCGGCTATCACCGCAGAAGTCTGGTGGAGACCAAGATGCACTGCTTCAAACGCCTGGGCCAACGGGTGATGGCGCGCACGTTTGAGCG
GCAGGTGGTGGAGTTGCATGTGCGTGTGGCTCTGCTCAACCGTTTCACGCAACTCGGGCGCCCGAGCACGGTGCCCGTGGGTGCCATGGCATAGCTGCGT
CTGGGGCTGGGGTAATCTCGTCTGCCTTCCGACTTGTGCAACAAAGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
948 bp315 aa47994+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSEPKGSKARYKTTNWAEYNAALKARGSLTIWLDKGMQWYAPSSGKRGRQHIFSNAAIQFCLGIKCLFGLALRQSLGMVESLLRLAGLDWRVPDYSTVCR
RQKTLQVQLPYRASTTALELLVDSTGIQFLGEGEWKRKKHGAEYRRQWRKVHLGIDAHTLEIRAIEVTDNSVGDAPMLLELLEQIPPDEPIASVSGDGAY
DTKACHAAIAQRNAQAVIPPRKNAQTWKATLVGAHARNEALRACDRLGRSIWKKWSGYHRRSLVETKMHCFKRLGQRVMARTFERQVVELHVRVALLNRF
TQLGRPSTVPVGAMA

 

Blast result :
Comments
ISEc88 is 92% aa similar to ISAte1.
References
1] Abe,R., Akeda,Y., Sugawara,Y., Yoshida,T., Tomono,K. and Hamada,S.(2021) Direct GenBank submission.