ISGpa2
- Family IS110
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| CP071487 | ND | Glaesserella parasuis | Glaesserella parasuis YHP1818 |
DNA section
IS Length : 1169 bp
Ends
Left end : TGTATATTAAAATTATAGTAAACTAGCAACATAAACCATAACGTTATCCACAGCTTGGGTGTCCCTAGAGCTAAAACTCGTTCTGTAGCGTAGGCGTGGA
Right end : GCGTTGGTTAGACGCAATGAAAAATGGGATGCTACACGCTACTTATCCACAGAATCTGTGGGTCAAAATTGAATAACTTTTTTGTGTGTAAACACAGTTG
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| 0 |
DNA sequence
TGTATATTAAAATTATAGTAAACTAGCAACATAAACCATAACGTTATCCACAGCTTGGGTGTCCCTAGAGCTAAAACTCGTTCTGTAGCGTAGGCGTGGA
TAACTTCATCAGCAAAACCGAACAGTTGAAATATAAACCCGAATACAAGGCAGGTTACCGATGAACGCTCCGATTTATTGTGGTATTGATGTTGCTAAAC
GCAATTTCGTGATTGGTTTTTCCCATCAGAAAAAGACCAAAACCGAAACCAATAACGCCAAAGGTATTCAACATACCTTGGACTATTTAAGCCAGTTTAA
TGTGGCTCTGATAACGCTTGAAGCAACGGGTGGATTAGAAATCCCCGTGGCAAAAGCCCTTGCTCGAGCAGGTTATCGTGTATTTATTGCTAATCCACTG
AAAGCCAGTGAGTTTGCAAAATCTCAAACGAGAGCCAAAACCGATGCAAAAGATGCGGTTAATCTCGCTTTCTATGGGCTCACTTGTGAGCTTAAAGGCG
AAGTAGAGCATCAGTTGTATGTTCCGCTTTCTGAGCAAGAAGAACAGCTGGAAGCCCTTGTGGTTCGCCGTCGTCAGCTTGTCGATATGCGAGTAGCAGA
GCTAAATCGTTTGCAACAAAGCCACGAAACCCAGTTGGACAATATCCAACAACACATTGAAATGCTTGATAAATTAATCGCCGAACTTGATAAAGATATC
GACGACCAAAGTAAGCATTTTAGTGATAAAGCTGACCTTATCTCAGACATCAAAGGCGTTGGCAAAAATTGCGTCGCCGTGATGATGTCAAGCCTGCCGG
AATTAGGCAAGCTAAGCAGCAAAAGAATTGCCTCACTCGTTGGCGTTATTCCGCATCCACAGGAAAGCGGTCAATGGAAAGGAAAATCCTTTTGCTATGG
TGGTCGAGCGATTGTTCGTAATGCCTTATATATGGCAGCACTATCGGCAATTCGCTTTGAACCTGTTTTTAAAGCCTTTTACACCCGATTGGTTGCAAAA
GGCAAAGCGAAGAAAGTCGCTATTATGGCGTGTATGCGTAAACTGCTAACCATTATGAATGCGTTGGTTAGACGCAATGAAAAATGGGATGCTACACGCT
ACTTATCCACAGAATCTGTGGGTCAAAATTGAATAACTTTTTTGTGTGTAAACACAGTTG
TAACTTCATCAGCAAAACCGAACAGTTGAAATATAAACCCGAATACAAGGCAGGTTACCGATGAACGCTCCGATTTATTGTGGTATTGATGTTGCTAAAC
GCAATTTCGTGATTGGTTTTTCCCATCAGAAAAAGACCAAAACCGAAACCAATAACGCCAAAGGTATTCAACATACCTTGGACTATTTAAGCCAGTTTAA
TGTGGCTCTGATAACGCTTGAAGCAACGGGTGGATTAGAAATCCCCGTGGCAAAAGCCCTTGCTCGAGCAGGTTATCGTGTATTTATTGCTAATCCACTG
AAAGCCAGTGAGTTTGCAAAATCTCAAACGAGAGCCAAAACCGATGCAAAAGATGCGGTTAATCTCGCTTTCTATGGGCTCACTTGTGAGCTTAAAGGCG
AAGTAGAGCATCAGTTGTATGTTCCGCTTTCTGAGCAAGAAGAACAGCTGGAAGCCCTTGTGGTTCGCCGTCGTCAGCTTGTCGATATGCGAGTAGCAGA
GCTAAATCGTTTGCAACAAAGCCACGAAACCCAGTTGGACAATATCCAACAACACATTGAAATGCTTGATAAATTAATCGCCGAACTTGATAAAGATATC
GACGACCAAAGTAAGCATTTTAGTGATAAAGCTGACCTTATCTCAGACATCAAAGGCGTTGGCAAAAATTGCGTCGCCGTGATGATGTCAAGCCTGCCGG
AATTAGGCAAGCTAAGCAGCAAAAGAATTGCCTCACTCGTTGGCGTTATTCCGCATCCACAGGAAAGCGGTCAATGGAAAGGAAAATCCTTTTGCTATGG
TGGTCGAGCGATTGTTCGTAATGCCTTATATATGGCAGCACTATCGGCAATTCGCTTTGAACCTGTTTTTAAAGCCTTTTACACCCGATTGGTTGCAAAA
GGCAAAGCGAAGAAAGTCGCTATTATGGCGTGTATGCGTAAACTGCTAACCATTATGAATGCGTTGGTTAGACGCAATGAAAAATGGGATGCTACACGCT
ACTTATCCACAGAATCTGTGGGTCAAAATTGAATAACTTTTTTGTGTGTAAACACAGTTG
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 972 bp | 323 aa | 161 | 1132 | + | No |
Chemistry : DEDD
ORF sequence :
MNAPIYCGIDVAKRNFVIGFSHQKKTKTETNNAKGIQHTLDYLSQFNVALITLEATGGLEIPVAKALARAGYRVFIANPLKASEFAKSQTRAKTDAKDAV
NLAFYGLTCELKGEVEHQLYVPLSEQEEQLEALVVRRRQLVDMRVAELNRLQQSHETQLDNIQQHIEMLDKLIAELDKDIDDQSKHFSDKADLISDIKGV
GKNCVAVMMSSLPELGKLSSKRIASLVGVIPHPQESGQWKGKSFCYGGRAIVRNALYMAALSAIRFEPVFKAFYTRLVAKGKAKKVAIMACMRKLLTIMN
ALVRRNEKWDATRYLSTESVGQN
NLAFYGLTCELKGEVEHQLYVPLSEQEEQLEALVVRRRQLVDMRVAELNRLQQSHETQLDNIQQHIEMLDKLIAELDKDIDDQSKHFSDKADLISDIKGV
GKNCVAVMMSSLPELGKLSSKRIASLVGVIPHPQESGQWKGKSFCYGGRAIVRNALYMAALSAIRFEPVFKAFYTRLVAKGKAKKVAIMACMRKLLTIMN
ALVRRNEKWDATRYLSTESVGQN
Blast result :
Comments
ISGpa2 is 69% aa similar to ISNme5.
There are an empty site in Glaesserella parasuis strain aHPS7.
There are an empty site in Glaesserella parasuis strain aHPS7.
References
1] Gongzheng Hu (2021) Direct submission.
2] Hu,G. and Sun,H. (2021) Direct GenBank submission.
3] Bentley,S.D., Vernikos,G.S., Snyder,L.A., Churcher,C., Arrowsmith,C., Chillingworth,T., Cronin,A., Davis,P.H., Holroyd,N.E., Jagels,K., Maddison,M., Moule,S., Rabbinowitsch,E., Sharp,S., Unwin,L., Whitehead,S., Quail,M.A., Achtman,M., Barrell,B., Saunders,N.J. and Parkhill,J.(2007) PLoS Genet. 3 (2), E23.
2] Hu,G. and Sun,H. (2021) Direct GenBank submission.
3] Bentley,S.D., Vernikos,G.S., Snyder,L.A., Churcher,C., Arrowsmith,C., Chillingworth,T., Cronin,A., Davis,P.H., Holroyd,N.E., Jagels,K., Maddison,M., Moule,S., Rabbinowitsch,E., Sharp,S., Unwin,L., Whitehead,S., Quail,M.A., Achtman,M., Barrell,B., Saunders,N.J. and Parkhill,J.(2007) PLoS Genet. 3 (2), E23.