ISRor6
- Family IS200/IS605
- Group IS1341
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
MT062912 | ND | Raoultella ornithinolytica | Raoultella ornithinolytica 193104922 plasmid p104922-NDM |
DNA section
IS Length : 1778 bp
Ends
Left end : GGTGGCTCAGGCGGGGCAGCCTCCGGGCTGGCCGGTACCACTTAGGCCGGTATTCCTACCCCCGTCTGGGCTACCACCATCTAAGAGCGTAGGAACTCTG II struct. : Yes
Right end : CAGTCAGGCCGCCCGTTGAAGCAGGAACCCACTGAGGCGAGTCAGGCTTCGGTCTGAACGCTGTAGGAATCCCCATCCTTCAGGGCGGGGAGGATGTCAA II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
CACCTATAGAA | TTAT | CTCGAGATGCCAGTTAC | TCAA |
DNA sequence
GGTGGCTCAGGCGGGGCAGCCTCCGGGCTGGCCGGTACCACTTAGGCCGGTATTCCTACCCCCGTCTGGGCTACCACCATCTAAGAGCGTAGGAACTCTG
GTGGTAGCAAATAGCTACTAAGTGGAGCCACGCTATGTACAGGTTCAAATTCGCGGCGATCTGCCGTACCGACCGTAAAAACAACATTCATCATTTTTCG
ACTATTGCTGATAGTGAGCATGCAGCGCCGCCAGCTTTCCTGCAAGTTCGTTCTGTTTTTCCAGGCACGTCTGCCGGTATCGGGAGGTGCAGCATGAATC
AAATGAAAATGAACGAACATGGGTTAGCTGAATCGCTAGAATCTGTACTCTGTCAGATAGTTGCTTTGCTTAATGTTACTCAGAATGCACTTGATGGAAG
TGAAAGTAGCATCTATATGCGAGATGCTGTGCAAATGCTCAATGCTGCGCGTAATCTAGCCATTGAAGCAGAGCAATACCGAGCGGAATGGGAACAACTG
ATTATTCGCAACCGGTAAGGGATTATATGTTGAAGCGGCAGGCCTTCAAATTCCAGTTAAGACCAAATGGTCAGCAGGAGCGTGATATGCGGCGCTTCGC
AGGGGCTGGTCGCTTCGTTTTCAATCGTGCGTTAGCGCTTCAGAATGAGAATCATGAGGCTGGGAATAAGTATATTCCTTACACCAAAATGGCTTCATGG
CTCATTGAGTGGAAATCACACCCTGATACCCAATGGCTAAAAGACGCGCCATCACAGCCGTTGCAGCAGTCACTGAAAGATCTGGAGCGCGGCTACAAAA
ATTTCTTCCAGAAGCGTGCTGCATTCCCTCGTTTCAAGAAACGCGGCCAAAACGATGCATTCCGCTACCCGCAAGGCGTGAAGCTCGATCAGGCCAACAA
TCGTATATCGCTTCCAAAGTTGGGATGGGTACCCTATCGCAATAGCCGTGAAGTCATCGGCGAAGTGAAAAACGTCACGGTCAGCCAGTCATGCGGCAAA
TGGTACGTCAGTATCCAGACGGAATACGAAGTGGCTGATCCGGTTCACAATGCTGAGTCGATGGTTGGTCTGGATGCCGGAGTCACAAAATTAGCAACGC
TTTCTGATGGCATGGTATACCATCCAGTCAACAGCTTTAAAACAAACCAGCGCAAGCTGGCAATGCTCCAGCGCCAGTTAAGCCGCAAAGTTAAATTCAG
TGCCAACTGGCAGAAACAGAAACGTAAAATCCAGCTTCATCACTCGCACATTGCCAATATCCGGCGGGACTACCTTCACAAAGTCACCAGTGAAATCAGC
AAAAACCACGCGATGATCGTCATTGAAGACTTGAAGGTCAGAAACATGTCGAAATCGGCAAAAGGCACGTCAGAGAAACACGGACGAAACGTCAGAGCTA
AATCAGGTCTGAACCGTTCGATACTGGATCAGGGCTGGTACGAAATGCGTCGTCAGCTTGAGTACAAGCAGCTCTGGCGCGGTGGTCAGGTGCTTGCTAT
ACCTCCGGCATATACCAGCCAGCGGTGCGCCTGGTGTGGTCATACGGCGAAAGAAAACCGTCAAACGCAAAGTAAATTCGTATGTCAGGTATGCGGCTAC
ACCGAGAACGCCGATGTAAACGGCGCACGTAACATATTAGCGGCAGGGCATGCCGTGCTTGCCTGTGGAGGGATGGTGCAGTCAGGCCGCCCGTTGAAGC
AGGAACCCACTGAGGCGAGTCAGGCTTCGGTCTGAACGCTGTAGGAATCCCCATCCTTCAGGGCGGGGAGGATGTCAA
GTGGTAGCAAATAGCTACTAAGTGGAGCCACGCTATGTACAGGTTCAAATTCGCGGCGATCTGCCGTACCGACCGTAAAAACAACATTCATCATTTTTCG
ACTATTGCTGATAGTGAGCATGCAGCGCCGCCAGCTTTCCTGCAAGTTCGTTCTGTTTTTCCAGGCACGTCTGCCGGTATCGGGAGGTGCAGCATGAATC
AAATGAAAATGAACGAACATGGGTTAGCTGAATCGCTAGAATCTGTACTCTGTCAGATAGTTGCTTTGCTTAATGTTACTCAGAATGCACTTGATGGAAG
TGAAAGTAGCATCTATATGCGAGATGCTGTGCAAATGCTCAATGCTGCGCGTAATCTAGCCATTGAAGCAGAGCAATACCGAGCGGAATGGGAACAACTG
ATTATTCGCAACCGGTAAGGGATTATATGTTGAAGCGGCAGGCCTTCAAATTCCAGTTAAGACCAAATGGTCAGCAGGAGCGTGATATGCGGCGCTTCGC
AGGGGCTGGTCGCTTCGTTTTCAATCGTGCGTTAGCGCTTCAGAATGAGAATCATGAGGCTGGGAATAAGTATATTCCTTACACCAAAATGGCTTCATGG
CTCATTGAGTGGAAATCACACCCTGATACCCAATGGCTAAAAGACGCGCCATCACAGCCGTTGCAGCAGTCACTGAAAGATCTGGAGCGCGGCTACAAAA
ATTTCTTCCAGAAGCGTGCTGCATTCCCTCGTTTCAAGAAACGCGGCCAAAACGATGCATTCCGCTACCCGCAAGGCGTGAAGCTCGATCAGGCCAACAA
TCGTATATCGCTTCCAAAGTTGGGATGGGTACCCTATCGCAATAGCCGTGAAGTCATCGGCGAAGTGAAAAACGTCACGGTCAGCCAGTCATGCGGCAAA
TGGTACGTCAGTATCCAGACGGAATACGAAGTGGCTGATCCGGTTCACAATGCTGAGTCGATGGTTGGTCTGGATGCCGGAGTCACAAAATTAGCAACGC
TTTCTGATGGCATGGTATACCATCCAGTCAACAGCTTTAAAACAAACCAGCGCAAGCTGGCAATGCTCCAGCGCCAGTTAAGCCGCAAAGTTAAATTCAG
TGCCAACTGGCAGAAACAGAAACGTAAAATCCAGCTTCATCACTCGCACATTGCCAATATCCGGCGGGACTACCTTCACAAAGTCACCAGTGAAATCAGC
AAAAACCACGCGATGATCGTCATTGAAGACTTGAAGGTCAGAAACATGTCGAAATCGGCAAAAGGCACGTCAGAGAAACACGGACGAAACGTCAGAGCTA
AATCAGGTCTGAACCGTTCGATACTGGATCAGGGCTGGTACGAAATGCGTCGTCAGCTTGAGTACAAGCAGCTCTGGCGCGGTGGTCAGGTGCTTGCTAT
ACCTCCGGCATATACCAGCCAGCGGTGCGCCTGGTGTGGTCATACGGCGAAAGAAAACCGTCAAACGCAAAGTAAATTCGTATGTCAGGTATGCGGCTAC
ACCGAGAACGCCGATGTAAACGGCGCACGTAACATATTAGCGGCAGGGCATGCCGTGCTTGCCTGTGGAGGGATGGTGCAGTCAGGCCGCCCGTTGAAGC
AGGAACCCACTGAGGCGAGTCAGGCTTCGGTCTGAACGCTGTAGGAATCCCCATCCTTCAGGGCGGGGAGGATGTCAA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1209 bp | 402 aa | 527 | 1735 | + | No |
AG : TnpB
ORF sequence :
MLKRQAFKFQLRPNGQQERDMRRFAGAGRFVFNRALALQNENHEAGNKYIPYTKMASWLIEWKSHPDTQWLKDAPSQPLQQSLKDLERGYKNFFQKRAAF
PRFKKRGQNDAFRYPQGVKLDQANNRISLPKLGWVPYRNSREVIGEVKNVTVSQSCGKWYVSIQTEYEVADPVHNAESMVGLDAGVTKLATLSDGMVYHP
VNSFKTNQRKLAMLQRQLSRKVKFSANWQKQKRKIQLHHSHIANIRRDYLHKVTSEISKNHAMIVIEDLKVRNMSKSAKGTSEKHGRNVRAKSGLNRSIL
DQGWYEMRRQLEYKQLWRGGQVLAIPPAYTSQRCAWCGHTAKENRQTQSKFVCQVCGYTENADVNGARNILAAGHAVLACGGMVQSGRPLKQEPTEASQA
SV
PRFKKRGQNDAFRYPQGVKLDQANNRISLPKLGWVPYRNSREVIGEVKNVTVSQSCGKWYVSIQTEYEVADPVHNAESMVGLDAGVTKLATLSDGMVYHP
VNSFKTNQRKLAMLQRQLSRKVKFSANWQKQKRKIQLHHSHIANIRRDYLHKVTSEISKNHAMIVIEDLKVRNMSKSAKGTSEKHGRNVRAKSGLNRSIL
DQGWYEMRRQLEYKQLWRGGQVLAIPPAYTSQRCAWCGHTAKENRQTQSKFVCQVCGYTENADVNGARNILAAGHAVLACGGMVQSGRPLKQEPTEASQA
SV
Blast result :
Comments
ISRor6 is 89% aa (TnpB) similar to IS609.
References
1] Jiao Feng (2021) Direct submission.
2] Zhou,D. (2020) Direct GenBank submission.
2] Zhou,D. (2020) Direct GenBank submission.