ISRor6

  • Family IS200/IS605
  • Group IS1341
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
MT062912 ND Raoultella ornithinolytica
Raoultella ornithinolytica 193104922 plasmid p104922-NDM
DNA section
IS Length : 1778 bp

Ends


Left end : GGTGGCTCAGGCGGGGCAGCCTCCGGGCTGGCCGGTACCACTTAGGCCGGTATTCCTACCCCCGTCTGGGCTACCACCATCTAAGAGCGTAGGAACTCTG II struct. : Yes
Right end : CAGTCAGGCCGCCCGTTGAAGCAGGAACCCACTGAGGCGAGTCAGGCTTCGGTCTGAACGCTGTAGGAATCCCCATCCTTCAGGGCGGGGAGGATGTCAA II struct. : Yes

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
CACCTATAGAATTATCTCGAGATGCCAGTTACTCAA

DNA sequence

GGTGGCTCAGGCGGGGCAGCCTCCGGGCTGGCCGGTACCACTTAGGCCGGTATTCCTACCCCCGTCTGGGCTACCACCATCTAAGAGCGTAGGAACTCTG
GTGGTAGCAAATAGCTACTAAGTGGAGCCACGCTATGTACAGGTTCAAATTCGCGGCGATCTGCCGTACCGACCGTAAAAACAACATTCATCATTTTTCG
ACTATTGCTGATAGTGAGCATGCAGCGCCGCCAGCTTTCCTGCAAGTTCGTTCTGTTTTTCCAGGCACGTCTGCCGGTATCGGGAGGTGCAGCATGAATC
AAATGAAAATGAACGAACATGGGTTAGCTGAATCGCTAGAATCTGTACTCTGTCAGATAGTTGCTTTGCTTAATGTTACTCAGAATGCACTTGATGGAAG
TGAAAGTAGCATCTATATGCGAGATGCTGTGCAAATGCTCAATGCTGCGCGTAATCTAGCCATTGAAGCAGAGCAATACCGAGCGGAATGGGAACAACTG
ATTATTCGCAACCGGTAAGGGATTATATGTTGAAGCGGCAGGCCTTCAAATTCCAGTTAAGACCAAATGGTCAGCAGGAGCGTGATATGCGGCGCTTCGC
AGGGGCTGGTCGCTTCGTTTTCAATCGTGCGTTAGCGCTTCAGAATGAGAATCATGAGGCTGGGAATAAGTATATTCCTTACACCAAAATGGCTTCATGG
CTCATTGAGTGGAAATCACACCCTGATACCCAATGGCTAAAAGACGCGCCATCACAGCCGTTGCAGCAGTCACTGAAAGATCTGGAGCGCGGCTACAAAA
ATTTCTTCCAGAAGCGTGCTGCATTCCCTCGTTTCAAGAAACGCGGCCAAAACGATGCATTCCGCTACCCGCAAGGCGTGAAGCTCGATCAGGCCAACAA
TCGTATATCGCTTCCAAAGTTGGGATGGGTACCCTATCGCAATAGCCGTGAAGTCATCGGCGAAGTGAAAAACGTCACGGTCAGCCAGTCATGCGGCAAA
TGGTACGTCAGTATCCAGACGGAATACGAAGTGGCTGATCCGGTTCACAATGCTGAGTCGATGGTTGGTCTGGATGCCGGAGTCACAAAATTAGCAACGC
TTTCTGATGGCATGGTATACCATCCAGTCAACAGCTTTAAAACAAACCAGCGCAAGCTGGCAATGCTCCAGCGCCAGTTAAGCCGCAAAGTTAAATTCAG
TGCCAACTGGCAGAAACAGAAACGTAAAATCCAGCTTCATCACTCGCACATTGCCAATATCCGGCGGGACTACCTTCACAAAGTCACCAGTGAAATCAGC
AAAAACCACGCGATGATCGTCATTGAAGACTTGAAGGTCAGAAACATGTCGAAATCGGCAAAAGGCACGTCAGAGAAACACGGACGAAACGTCAGAGCTA
AATCAGGTCTGAACCGTTCGATACTGGATCAGGGCTGGTACGAAATGCGTCGTCAGCTTGAGTACAAGCAGCTCTGGCGCGGTGGTCAGGTGCTTGCTAT
ACCTCCGGCATATACCAGCCAGCGGTGCGCCTGGTGTGGTCATACGGCGAAAGAAAACCGTCAAACGCAAAGTAAATTCGTATGTCAGGTATGCGGCTAC
ACCGAGAACGCCGATGTAAACGGCGCACGTAACATATTAGCGGCAGGGCATGCCGTGCTTGCCTGTGGAGGGATGGTGCAGTCAGGCCGCCCGTTGAAGC
AGGAACCCACTGAGGCGAGTCAGGCTTCGGTCTGAACGCTGTAGGAATCCCCATCCTTCAGGGCGGGGAGGATGTCAA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1209 bp402 aa5271735+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MLKRQAFKFQLRPNGQQERDMRRFAGAGRFVFNRALALQNENHEAGNKYIPYTKMASWLIEWKSHPDTQWLKDAPSQPLQQSLKDLERGYKNFFQKRAAF
PRFKKRGQNDAFRYPQGVKLDQANNRISLPKLGWVPYRNSREVIGEVKNVTVSQSCGKWYVSIQTEYEVADPVHNAESMVGLDAGVTKLATLSDGMVYHP
VNSFKTNQRKLAMLQRQLSRKVKFSANWQKQKRKIQLHHSHIANIRRDYLHKVTSEISKNHAMIVIEDLKVRNMSKSAKGTSEKHGRNVRAKSGLNRSIL
DQGWYEMRRQLEYKQLWRGGQVLAIPPAYTSQRCAWCGHTAKENRQTQSKFVCQVCGYTENADVNGARNILAAGHAVLACGGMVQSGRPLKQEPTEASQA
SV

 

Blast result :
Comments
ISRor6 is 89% aa (TnpB) similar to IS609.
References
1] Jiao Feng (2021) Direct submission.
2] Zhou,D. (2020) Direct GenBank submission.