ISPa104

  • Family IS481
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Pseudomonas aeruginosa
Pseudomonas aeruginosa
Delftia acidovorans plasmid pUO1
DNA section
IS Length : 1077 bp

Ends


IR Length : 17/18

IRL : TGTCGCATCCCGGACGATTGCATAGACTCTAAACGCTATCCACTCTTCAT
IRR : TGTCGCATCCCGTACGATCATATGGTCGCTTGTGAAACAGGTGCGGGTGG

Insertion site


Left flankDirect repeatRight flankDR Length
TATAGCCGACGTTGTTGTCAGACAT6
CAACCAGATTGGCTGTTAATGTTCCCGGTGGAATA6

DNA sequence

TGTCGCATCCCGGACGATTGCATAGACTCTAAACGCTATCCACTCTTCATGGCCCGAGCCGTTCTAAAGGAGTTGATAGAGTCCTTGCAATCCACCCAGG
GAGTGAAGCCATGTTGATAGCCCTGCACAAGAACGCCCGCACCACGCCCGCCGTGCGTGCCGAGATCGCAGCCAGCGATGAACCAGCCAGCATCCTGGCC
CAGCGCTTTGGGATCACTGAGCAGACGGTCTACAAGTGGAAGAAGCGCGATGTCTTTGCAGACCGCTCGCACACGGCCCATCGCCTGCAGACGGTGCTCA
CGCCTGCGCAAGAGACCGTGGTGGTTCACTTGCGCCGTACCTTGCTGCTACCTTTGGATGACCTGCTGGCCGTGACACGGGAGTTCATCTGTCCCCATGT
CTCGCGCTCCGGGCTGGACAGGTGCTTGCGCCGCCATGGAGCGGGCAACCTCAACGCCCTCAAGCCCCAGGAGCCTGCGGTAGCCCACAAGGCCTTCAAG
AGCTACGAGCCAGGCTACGTGCACATGGACGTGAAGTACCTGCCCCAGATGCAGGATGAGAGCAGCCGGCGCTACCTATTCGTGGCCATCGACAGGGCCA
CGCGTTGGGTGTTTGTGCAGCTCAAGTCCAACAAGACCGCCGCCAGTGCACAGGCCTTCCTCAAGGCGTTGCACAAGGCCTGTCCGATCAGGATCAACAA
GCTGTTGACCGACAACGGCAAAGAGTTCACGGACCGTCTGTTTGCCAGCAAGGAACGCGAACCCAGCGGCAACCATGAATTCGATCAACTGTGCCGGGAG
TTGGGCATAGAGCACCGATTGACCAAGCCCAGGACGCCCAGAACCAACGGCATGGTGGAGCGGTTCAATGGACGCATTGCGGACGTTCTGAAGACCCACC
GGTTCAACAGCCGCGAGGACATGGAGGAGACCTTGCTGCGCTATGTGGCCTTGTACAACCACCAGTTGCCGCAGTCAGCGCTCAAGAGCAGTACGCCGAT
GCAGGCCATGAAAGATTGGTACCAGACCCACCCGCACCTGTTTCACAAGCGACCATATGATCGTACGGGATGCGACA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
972 bp323 aa1111082+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MLIALHKNARTTPAVRAEIAASDEPASILAQRFGITEQTVYKWKKRDVFADRSHTAHRLQTVLTPAQETVVVHLRRTLLLPLDDLLAVTREFICPHVSRS
GLDRCLRRHGAGNLNALKPQEPAVAHKAFKSYEPGYVHMDVKYLPQMQDESSRRYLFVAIDRATRWVFVQLKSNKTAASAQAFLKALHKACPIRINKLLT
DNGKEFTDRLFASKEREPSGNHEFDQLCRELGIEHRLTKPRTPRTNGMVERFNGRIADVLKTHRFNSREDMEETLLRYVALYNHQLPQSALKSSTPMQAM
KDWYQTHPHLFHKRPYDRTGCDI

 

Blast result :
Comments
ISPa104 is 94% aa similar to ISAisp3.
The STOP codon is done by the insertion site.
References
1] Maria Lopez (2021) Direct submission.