ISPa104
- Family IS481
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Pseudomonas aeruginosa | Pseudomonas aeruginosa Delftia acidovorans plasmid pUO1 |
DNA section
IS Length : 1077 bp
Ends
IR Length : 17/18
IRL : TGTCGCATCCCGGACGATTGCATAGACTCTAAACGCTATCCACTCTTCAT
IRR : TGTCGCATCCCGTACGATCATATGGTCGCTTGTGAAACAGGTGCGGGTGG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TATAGC | CGACGTTGTTGTCAGACAT | 6 | |
CAACCAGATTGGCT | GTTAAT | GTTCCCGGTGGAATA | 6 |
DNA sequence
TGTCGCATCCCGGACGATTGCATAGACTCTAAACGCTATCCACTCTTCATGGCCCGAGCCGTTCTAAAGGAGTTGATAGAGTCCTTGCAATCCACCCAGG
GAGTGAAGCCATGTTGATAGCCCTGCACAAGAACGCCCGCACCACGCCCGCCGTGCGTGCCGAGATCGCAGCCAGCGATGAACCAGCCAGCATCCTGGCC
CAGCGCTTTGGGATCACTGAGCAGACGGTCTACAAGTGGAAGAAGCGCGATGTCTTTGCAGACCGCTCGCACACGGCCCATCGCCTGCAGACGGTGCTCA
CGCCTGCGCAAGAGACCGTGGTGGTTCACTTGCGCCGTACCTTGCTGCTACCTTTGGATGACCTGCTGGCCGTGACACGGGAGTTCATCTGTCCCCATGT
CTCGCGCTCCGGGCTGGACAGGTGCTTGCGCCGCCATGGAGCGGGCAACCTCAACGCCCTCAAGCCCCAGGAGCCTGCGGTAGCCCACAAGGCCTTCAAG
AGCTACGAGCCAGGCTACGTGCACATGGACGTGAAGTACCTGCCCCAGATGCAGGATGAGAGCAGCCGGCGCTACCTATTCGTGGCCATCGACAGGGCCA
CGCGTTGGGTGTTTGTGCAGCTCAAGTCCAACAAGACCGCCGCCAGTGCACAGGCCTTCCTCAAGGCGTTGCACAAGGCCTGTCCGATCAGGATCAACAA
GCTGTTGACCGACAACGGCAAAGAGTTCACGGACCGTCTGTTTGCCAGCAAGGAACGCGAACCCAGCGGCAACCATGAATTCGATCAACTGTGCCGGGAG
TTGGGCATAGAGCACCGATTGACCAAGCCCAGGACGCCCAGAACCAACGGCATGGTGGAGCGGTTCAATGGACGCATTGCGGACGTTCTGAAGACCCACC
GGTTCAACAGCCGCGAGGACATGGAGGAGACCTTGCTGCGCTATGTGGCCTTGTACAACCACCAGTTGCCGCAGTCAGCGCTCAAGAGCAGTACGCCGAT
GCAGGCCATGAAAGATTGGTACCAGACCCACCCGCACCTGTTTCACAAGCGACCATATGATCGTACGGGATGCGACA
GAGTGAAGCCATGTTGATAGCCCTGCACAAGAACGCCCGCACCACGCCCGCCGTGCGTGCCGAGATCGCAGCCAGCGATGAACCAGCCAGCATCCTGGCC
CAGCGCTTTGGGATCACTGAGCAGACGGTCTACAAGTGGAAGAAGCGCGATGTCTTTGCAGACCGCTCGCACACGGCCCATCGCCTGCAGACGGTGCTCA
CGCCTGCGCAAGAGACCGTGGTGGTTCACTTGCGCCGTACCTTGCTGCTACCTTTGGATGACCTGCTGGCCGTGACACGGGAGTTCATCTGTCCCCATGT
CTCGCGCTCCGGGCTGGACAGGTGCTTGCGCCGCCATGGAGCGGGCAACCTCAACGCCCTCAAGCCCCAGGAGCCTGCGGTAGCCCACAAGGCCTTCAAG
AGCTACGAGCCAGGCTACGTGCACATGGACGTGAAGTACCTGCCCCAGATGCAGGATGAGAGCAGCCGGCGCTACCTATTCGTGGCCATCGACAGGGCCA
CGCGTTGGGTGTTTGTGCAGCTCAAGTCCAACAAGACCGCCGCCAGTGCACAGGCCTTCCTCAAGGCGTTGCACAAGGCCTGTCCGATCAGGATCAACAA
GCTGTTGACCGACAACGGCAAAGAGTTCACGGACCGTCTGTTTGCCAGCAAGGAACGCGAACCCAGCGGCAACCATGAATTCGATCAACTGTGCCGGGAG
TTGGGCATAGAGCACCGATTGACCAAGCCCAGGACGCCCAGAACCAACGGCATGGTGGAGCGGTTCAATGGACGCATTGCGGACGTTCTGAAGACCCACC
GGTTCAACAGCCGCGAGGACATGGAGGAGACCTTGCTGCGCTATGTGGCCTTGTACAACCACCAGTTGCCGCAGTCAGCGCTCAAGAGCAGTACGCCGAT
GCAGGCCATGAAAGATTGGTACCAGACCCACCCGCACCTGTTTCACAAGCGACCATATGATCGTACGGGATGCGACA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
972 bp | 323 aa | 111 | 1082 | + | No |
Chemistry : DDE
ORF sequence :
MLIALHKNARTTPAVRAEIAASDEPASILAQRFGITEQTVYKWKKRDVFADRSHTAHRLQTVLTPAQETVVVHLRRTLLLPLDDLLAVTREFICPHVSRS
GLDRCLRRHGAGNLNALKPQEPAVAHKAFKSYEPGYVHMDVKYLPQMQDESSRRYLFVAIDRATRWVFVQLKSNKTAASAQAFLKALHKACPIRINKLLT
DNGKEFTDRLFASKEREPSGNHEFDQLCRELGIEHRLTKPRTPRTNGMVERFNGRIADVLKTHRFNSREDMEETLLRYVALYNHQLPQSALKSSTPMQAM
KDWYQTHPHLFHKRPYDRTGCDI
GLDRCLRRHGAGNLNALKPQEPAVAHKAFKSYEPGYVHMDVKYLPQMQDESSRRYLFVAIDRATRWVFVQLKSNKTAASAQAFLKALHKACPIRINKLLT
DNGKEFTDRLFASKEREPSGNHEFDQLCRELGIEHRLTKPRTPRTNGMVERFNGRIADVLKTHRFNSREDMEETLLRYVALYNHQLPQSALKSSTPMQAM
KDWYQTHPHLFHKRPYDRTGCDI
Blast result :
Comments
ISPa104 is 94% aa similar to ISAisp3.
The STOP codon is done by the insertion site.
The STOP codon is done by the insertion site.
References
1] Maria Lopez (2021) Direct submission.