ISPa111

  • Family IS110
  • Group IS1111
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
JAFFTN010000025 ND Pseudomonas aeruginosa
Pseudomonas aeruginosa
Pseudomonas aeruginosa NMI1295/15
DNA section
IS Length : 1542 bp

Ends


IR Length : 11

IRL : TGATCGAATGGACTCCCCTCGCGTCCCACACGGCTTCGGTGAGCCAGACT
IRR : ----TGTATGGACTCCCCCGTCAACCCCTGACGGCAGGATTTTGTGAAGC

Comments : According to the rules of this family, the IRs are not at the termini of the IS.

Insertion site


Left flankDirect repeatRight flankDR Length
ATCTCGGCTTGAACGAATTGTTAGGT0

DNA sequence

TGATCGAATGGACTCCCCTCGCGTCCCACACGGCTTCGGTGAGCCAGACTGATGTTGTTGACCATCAGGACACGGGATCAGGAGAGGAGTCCGCCATGAA
CGCTACCACCAAATCCATCCGCACAGAATCTTCCGCCGTCATGCTCGCCATCGATCTTGCCAAGGACGTGTTCGAACTGGCCTTTGCCGACGCAACGGGC
CGTATCGTCGAGCGCAAACGCCTCAAGCGCAAGCCGTTTGCGCAGTGCCTGCAAAACCGGGCGCCGCTGCGCATCGTGATGGAAGCCTGCGGCTCGGCGC
ACGCCTGGGCGCGGCGCTTTCAGCGGCTCGGTCATGCGGTGGAACTGCTGCCGGCGCAGCACGTGCGGCCCTACGTGCGGCGCAACAAGACCGATCGCGC
CGATGCCGCCGGGTTGCTGGAGGCGGCACGCTGCGGGGATATTCGCCCGGTGCCGGTGAAGACGCCCGAGCAGCAAGGCACGCAGGGCCTGCACCGCATC
CGCGAGCACCACAAGGCCGAGCGCACCGCGGCGATCAACACGGTGCGCGGGTTGTTGCGCGAGTTCGGCTTCGCCATTCCCGCCGGGGCCGACAAGGTGC
GGCCTGCGGTGCTGGCGACGCTGGAAGATGGCGACAACGATATCCCGATGGAACTGCGGCATGCCCTGGCCGGCCTGCTGGATCGCATCGCCGATTGTCA
GGAGGCGATGGGGGCCATCGAGAAACACCTGGCTGACATCGCCAAACGCGACACCCGCAGCCAGCGCCTGATGGCCGCTTCCGGCGTGGGCCTGATCACC
GCCACCGCGATGAGCGCCGGCATCGGCGACTTCGCCCGGTTCCCGTCCGGTCGGCATTTCGCCAGCGCCCTGGGCCTGACCCCGCGCGAATACTCCAGCG
GCGGTAGCCGCAAGCTCGGGCGCATCACCAAGCGCGGCGATGTGTACCTGCGCACGCTGCTGATCCACGGGGCACGCTCGGCCCTGGTGGCGGCGCACAC
CGCACGAAAACGCGGCCAGCCACTGGATCGCACCCAGCAATGGGCGCTGGCGCTGGCCGAACGCAAGGGCCACAACAAGGCCGCCGTGGCCTTGGCCAAC
AAGACTGCGCGCCGGTTGTGGGCGGCCGAGCATCACGGCACGCCTTTCGATCCTGAACACGTCAGTCGGCCCGAAGCACACGCCGCCTGATTTCATTCCA
CCGCAACCGTGTCGGTACTGCCGCCACACCGCCACACCGCTTCGCCGTTTCAACCCTCTGATGTTGCAAGCCTCAACTCATGCAAGCGTGTCGGTCCCCG
AAGCAGCCAAGCCGATAACAATAGTGATCTTCGTGATCGTTTGAACGTCTGGCCCTGCTTCGCGGATTCCATGATGGCTCGGGCAAAAGCCCACCGCAAA
GCCGAATACACGAATGCAACCGCTCCCGCCTTGCCGGGGTTGAAGCAAAAGCGTCAGCAGGGTTAAAAACAGAGAATCAAACGCCGTGAAGCTGCCGCTT
CACAAAATCCTGCCGTCAGGGGTTGACGGGGGAGTCCATACA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1095 bp364 aa961190+No
ORF function : Transposase
Chemistry : DEDD

ORF sequence :

MNATTKSIRTESSAVMLAIDLAKDVFELAFADATGRIVERKRLKRKPFAQCLQNRAPLRIVMEACGSAHAWARRFQRLGHAVELLPAQHVRPYVRRNKTD
RADAAGLLEAARCGDIRPVPVKTPEQQGTQGLHRIREHHKAERTAAINTVRGLLREFGFAIPAGADKVRPAVLATLEDGDNDIPMELRHALAGLLDRIAD
CQEAMGAIEKHLADIAKRDTRSQRLMAASGVGLITATAMSAGIGDFARFPSGRHFASALGLTPREYSSGGSRKLGRITKRGDVYLRTLLIHGARSALVAA
HTARKRGQPLDRTQQWALALAERKGHNKAAVALANKTARRLWAAEHHGTPFDPEHVSRPEAHAA

 

Blast result :
Comments
ISPa111 91% aa similar to ISSko1.
Found in Pseudomonas aeruginosa class 1 integron In1648.
References
1] Urbanowicz P. (2021) Direct submission.
2] Urbanowicz,P., Izdebski,R. and Gniadkowski,M. (2021) Direct submission GanBank.