ISPa111
- Family IS110
- Group IS1111
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
JAFFTN010000025 | ND | Pseudomonas aeruginosa | Pseudomonas aeruginosa Pseudomonas aeruginosa NMI1295/15 |
DNA section
IS Length : 1542 bp
Ends
IR Length : 11
IRL : TGATCGAATGGACTCCCCTCGCGTCCCACACGGCTTCGGTGAGCCAGACT
IRR : ----TGTATGGACTCCCCCGTCAACCCCTGACGGCAGGATTTTGTGAAGC
Comments : According to the rules of this family, the IRs are not at the termini of the IS.
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ATCTCGGCTTGAA | CGAATTGTTAGGT | 0 |
DNA sequence
TGATCGAATGGACTCCCCTCGCGTCCCACACGGCTTCGGTGAGCCAGACTGATGTTGTTGACCATCAGGACACGGGATCAGGAGAGGAGTCCGCCATGAA
CGCTACCACCAAATCCATCCGCACAGAATCTTCCGCCGTCATGCTCGCCATCGATCTTGCCAAGGACGTGTTCGAACTGGCCTTTGCCGACGCAACGGGC
CGTATCGTCGAGCGCAAACGCCTCAAGCGCAAGCCGTTTGCGCAGTGCCTGCAAAACCGGGCGCCGCTGCGCATCGTGATGGAAGCCTGCGGCTCGGCGC
ACGCCTGGGCGCGGCGCTTTCAGCGGCTCGGTCATGCGGTGGAACTGCTGCCGGCGCAGCACGTGCGGCCCTACGTGCGGCGCAACAAGACCGATCGCGC
CGATGCCGCCGGGTTGCTGGAGGCGGCACGCTGCGGGGATATTCGCCCGGTGCCGGTGAAGACGCCCGAGCAGCAAGGCACGCAGGGCCTGCACCGCATC
CGCGAGCACCACAAGGCCGAGCGCACCGCGGCGATCAACACGGTGCGCGGGTTGTTGCGCGAGTTCGGCTTCGCCATTCCCGCCGGGGCCGACAAGGTGC
GGCCTGCGGTGCTGGCGACGCTGGAAGATGGCGACAACGATATCCCGATGGAACTGCGGCATGCCCTGGCCGGCCTGCTGGATCGCATCGCCGATTGTCA
GGAGGCGATGGGGGCCATCGAGAAACACCTGGCTGACATCGCCAAACGCGACACCCGCAGCCAGCGCCTGATGGCCGCTTCCGGCGTGGGCCTGATCACC
GCCACCGCGATGAGCGCCGGCATCGGCGACTTCGCCCGGTTCCCGTCCGGTCGGCATTTCGCCAGCGCCCTGGGCCTGACCCCGCGCGAATACTCCAGCG
GCGGTAGCCGCAAGCTCGGGCGCATCACCAAGCGCGGCGATGTGTACCTGCGCACGCTGCTGATCCACGGGGCACGCTCGGCCCTGGTGGCGGCGCACAC
CGCACGAAAACGCGGCCAGCCACTGGATCGCACCCAGCAATGGGCGCTGGCGCTGGCCGAACGCAAGGGCCACAACAAGGCCGCCGTGGCCTTGGCCAAC
AAGACTGCGCGCCGGTTGTGGGCGGCCGAGCATCACGGCACGCCTTTCGATCCTGAACACGTCAGTCGGCCCGAAGCACACGCCGCCTGATTTCATTCCA
CCGCAACCGTGTCGGTACTGCCGCCACACCGCCACACCGCTTCGCCGTTTCAACCCTCTGATGTTGCAAGCCTCAACTCATGCAAGCGTGTCGGTCCCCG
AAGCAGCCAAGCCGATAACAATAGTGATCTTCGTGATCGTTTGAACGTCTGGCCCTGCTTCGCGGATTCCATGATGGCTCGGGCAAAAGCCCACCGCAAA
GCCGAATACACGAATGCAACCGCTCCCGCCTTGCCGGGGTTGAAGCAAAAGCGTCAGCAGGGTTAAAAACAGAGAATCAAACGCCGTGAAGCTGCCGCTT
CACAAAATCCTGCCGTCAGGGGTTGACGGGGGAGTCCATACA
CGCTACCACCAAATCCATCCGCACAGAATCTTCCGCCGTCATGCTCGCCATCGATCTTGCCAAGGACGTGTTCGAACTGGCCTTTGCCGACGCAACGGGC
CGTATCGTCGAGCGCAAACGCCTCAAGCGCAAGCCGTTTGCGCAGTGCCTGCAAAACCGGGCGCCGCTGCGCATCGTGATGGAAGCCTGCGGCTCGGCGC
ACGCCTGGGCGCGGCGCTTTCAGCGGCTCGGTCATGCGGTGGAACTGCTGCCGGCGCAGCACGTGCGGCCCTACGTGCGGCGCAACAAGACCGATCGCGC
CGATGCCGCCGGGTTGCTGGAGGCGGCACGCTGCGGGGATATTCGCCCGGTGCCGGTGAAGACGCCCGAGCAGCAAGGCACGCAGGGCCTGCACCGCATC
CGCGAGCACCACAAGGCCGAGCGCACCGCGGCGATCAACACGGTGCGCGGGTTGTTGCGCGAGTTCGGCTTCGCCATTCCCGCCGGGGCCGACAAGGTGC
GGCCTGCGGTGCTGGCGACGCTGGAAGATGGCGACAACGATATCCCGATGGAACTGCGGCATGCCCTGGCCGGCCTGCTGGATCGCATCGCCGATTGTCA
GGAGGCGATGGGGGCCATCGAGAAACACCTGGCTGACATCGCCAAACGCGACACCCGCAGCCAGCGCCTGATGGCCGCTTCCGGCGTGGGCCTGATCACC
GCCACCGCGATGAGCGCCGGCATCGGCGACTTCGCCCGGTTCCCGTCCGGTCGGCATTTCGCCAGCGCCCTGGGCCTGACCCCGCGCGAATACTCCAGCG
GCGGTAGCCGCAAGCTCGGGCGCATCACCAAGCGCGGCGATGTGTACCTGCGCACGCTGCTGATCCACGGGGCACGCTCGGCCCTGGTGGCGGCGCACAC
CGCACGAAAACGCGGCCAGCCACTGGATCGCACCCAGCAATGGGCGCTGGCGCTGGCCGAACGCAAGGGCCACAACAAGGCCGCCGTGGCCTTGGCCAAC
AAGACTGCGCGCCGGTTGTGGGCGGCCGAGCATCACGGCACGCCTTTCGATCCTGAACACGTCAGTCGGCCCGAAGCACACGCCGCCTGATTTCATTCCA
CCGCAACCGTGTCGGTACTGCCGCCACACCGCCACACCGCTTCGCCGTTTCAACCCTCTGATGTTGCAAGCCTCAACTCATGCAAGCGTGTCGGTCCCCG
AAGCAGCCAAGCCGATAACAATAGTGATCTTCGTGATCGTTTGAACGTCTGGCCCTGCTTCGCGGATTCCATGATGGCTCGGGCAAAAGCCCACCGCAAA
GCCGAATACACGAATGCAACCGCTCCCGCCTTGCCGGGGTTGAAGCAAAAGCGTCAGCAGGGTTAAAAACAGAGAATCAAACGCCGTGAAGCTGCCGCTT
CACAAAATCCTGCCGTCAGGGGTTGACGGGGGAGTCCATACA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1095 bp | 364 aa | 96 | 1190 | + | No |
Chemistry : DEDD
ORF sequence :
MNATTKSIRTESSAVMLAIDLAKDVFELAFADATGRIVERKRLKRKPFAQCLQNRAPLRIVMEACGSAHAWARRFQRLGHAVELLPAQHVRPYVRRNKTD
RADAAGLLEAARCGDIRPVPVKTPEQQGTQGLHRIREHHKAERTAAINTVRGLLREFGFAIPAGADKVRPAVLATLEDGDNDIPMELRHALAGLLDRIAD
CQEAMGAIEKHLADIAKRDTRSQRLMAASGVGLITATAMSAGIGDFARFPSGRHFASALGLTPREYSSGGSRKLGRITKRGDVYLRTLLIHGARSALVAA
HTARKRGQPLDRTQQWALALAERKGHNKAAVALANKTARRLWAAEHHGTPFDPEHVSRPEAHAA
RADAAGLLEAARCGDIRPVPVKTPEQQGTQGLHRIREHHKAERTAAINTVRGLLREFGFAIPAGADKVRPAVLATLEDGDNDIPMELRHALAGLLDRIAD
CQEAMGAIEKHLADIAKRDTRSQRLMAASGVGLITATAMSAGIGDFARFPSGRHFASALGLTPREYSSGGSRKLGRITKRGDVYLRTLLIHGARSALVAA
HTARKRGQPLDRTQQWALALAERKGHNKAAVALANKTARRLWAAEHHGTPFDPEHVSRPEAHAA
Blast result :
Comments
ISPa111 91% aa similar to ISSko1.
Found in Pseudomonas aeruginosa class 1 integron In1648.
Found in Pseudomonas aeruginosa class 1 integron In1648.
References
1] Urbanowicz P. (2021) Direct submission.
2] Urbanowicz,P., Izdebski,R. and Gniadkowski,M. (2021) Direct submission GanBank.
2] Urbanowicz,P., Izdebski,R. and Gniadkowski,M. (2021) Direct submission GanBank.