ISMahy7
- Family IS110
- Group IS1111
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_008740.1 | ND | Marinobacter hydrocarbonoclasticus | Marinobacter hydrocarbonoclasticus VT8 |
DNA section
IS Length : 1383 bp
Ends
IR Length : 15
IRL : CTAACGAATGATATGGACTCCCCCTGCTCCCTCGGCATCGATGTGCCACA
IRR : ---CTACATGGACTCCCCCTGCGGTCAAGCAACGCCATTTGATTTCGAAG
Comments : According to the rules of this group, IRs are not at the termini of the IS.
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| AAAGCACTACCAGTAAC | CTGAGCTTAGCGGT | 0 |
DNA sequence
CTAACGAATGATATGGACTCCCCCTGCTCCCTCGGCATCGATGTGCCACATTGAAGGTGTCGAAGTCTTCAATCGAAAGCAGGAGGAGTCATCATGAATG
TTACAACCATCGGCATCGATCTGGCGAAAACTGTGTTCAGTATTCATGGCACCAATCAACACGGCAAGGTCGTGGTTCGCAAACGGCTCAATCGCCCTAA
ACTGCTGGCGTTCTTCGCACAACTGCCTCCGTGCCTGATCGGCATGGAGGCCTGTTCCGGTGCCCATTACTGGGCTCGAGAGTTAACCAAACTCGGCCAC
GATGCCCGGATCATTGCGCCCCGCTTTGTCGCGCCGTATCGCAAGAGCAGCAAGAACGACGACAACGATGCCGAGGCCATCTGCGAAGCCGTCAGTCGGC
CCAACATGCGCTTCGTTCCCATTAAGACTGATGACCAGCAAGCCGTTCTGTGCCTGCATCGCATCCGCCGTGGGCTGACCAAAGAGCGCACCGCGCAGAT
CAACCAGATTCGTGGTCTGTTGGCCGAGTTCGGACTGATTATTCCTCAAGGGCGCTATCACGCCCGACATCGAATTCCCGAAATCCTGGAAGATGCCGAA
AATGGTTTACCCATGCTGGCCCGGCGTTTACTCAACAACATCAACCAGCGCATTCTCCAGCTCGATGAGGAGATCCTGGCCTATGACCGGGAAATCGAAG
CCATGGCCCGGCGCGACGAACAGGCCAAACGGTTGATGGCCATTCCCGGCATCGGCCCACAAACAGCCACTGCGATATTGGCCAGTGCGCCGGATCCCAG
ACAGTTCAAAAGCGGACGACACTTCGCCGCCTGGCTCGGGCTCGTACCCAGGCAGTACTCGACCGGAGGCAAGCCCCGGCTGGGTAGAATCACCAAGCGC
GGGGACAAGTACCTGCGAATGTTGCTGATCCATGGCACCCGAGCGGTGATTGCCAAACTCGCCGACAAACACGATCAACTCAGCCAGTGGGCCAAAGGGT
TGGTGGAACGTCGCGGCTACAAACGAGCCGCCGTGGCATTGGCCGCCAAGAATGCCCGGATTATCTGGGCACTGTTGATGAACCAAACCGAGTTTAAAAC
ACAGCCTGCAGAGGGCTGATAACGGGCAACAACGACAGGCAGAACACGCCTGCCAGCCGAGTCTTGCAACGGCAAGCGATGACGGAACGGTCAGACCGAG
AGTGATTGAACCTGTTAAGCCTTGCGGCTGAAACAAGCCGACTAACGAATGAGGTCATCACTCACACGCATCATCATCCTGGCCCGGGCAACAATGCCCA
CACAGAGGCCGAATGTAGAGCTGCAGTCTCAAACCGCTTCGAAATCAAATGGCGTTGCTTGACCGCAGGGGGAGTCCATGTAG
TTACAACCATCGGCATCGATCTGGCGAAAACTGTGTTCAGTATTCATGGCACCAATCAACACGGCAAGGTCGTGGTTCGCAAACGGCTCAATCGCCCTAA
ACTGCTGGCGTTCTTCGCACAACTGCCTCCGTGCCTGATCGGCATGGAGGCCTGTTCCGGTGCCCATTACTGGGCTCGAGAGTTAACCAAACTCGGCCAC
GATGCCCGGATCATTGCGCCCCGCTTTGTCGCGCCGTATCGCAAGAGCAGCAAGAACGACGACAACGATGCCGAGGCCATCTGCGAAGCCGTCAGTCGGC
CCAACATGCGCTTCGTTCCCATTAAGACTGATGACCAGCAAGCCGTTCTGTGCCTGCATCGCATCCGCCGTGGGCTGACCAAAGAGCGCACCGCGCAGAT
CAACCAGATTCGTGGTCTGTTGGCCGAGTTCGGACTGATTATTCCTCAAGGGCGCTATCACGCCCGACATCGAATTCCCGAAATCCTGGAAGATGCCGAA
AATGGTTTACCCATGCTGGCCCGGCGTTTACTCAACAACATCAACCAGCGCATTCTCCAGCTCGATGAGGAGATCCTGGCCTATGACCGGGAAATCGAAG
CCATGGCCCGGCGCGACGAACAGGCCAAACGGTTGATGGCCATTCCCGGCATCGGCCCACAAACAGCCACTGCGATATTGGCCAGTGCGCCGGATCCCAG
ACAGTTCAAAAGCGGACGACACTTCGCCGCCTGGCTCGGGCTCGTACCCAGGCAGTACTCGACCGGAGGCAAGCCCCGGCTGGGTAGAATCACCAAGCGC
GGGGACAAGTACCTGCGAATGTTGCTGATCCATGGCACCCGAGCGGTGATTGCCAAACTCGCCGACAAACACGATCAACTCAGCCAGTGGGCCAAAGGGT
TGGTGGAACGTCGCGGCTACAAACGAGCCGCCGTGGCATTGGCCGCCAAGAATGCCCGGATTATCTGGGCACTGTTGATGAACCAAACCGAGTTTAAAAC
ACAGCCTGCAGAGGGCTGATAACGGGCAACAACGACAGGCAGAACACGCCTGCCAGCCGAGTCTTGCAACGGCAAGCGATGACGGAACGGTCAGACCGAG
AGTGATTGAACCTGTTAAGCCTTGCGGCTGAAACAAGCCGACTAACGAATGAGGTCATCACTCACACGCATCATCATCCTGGCCCGGGCAACAATGCCCA
CACAGAGGCCGAATGTAGAGCTGCAGTCTCAAACCGCTTCGAAATCAAATGGCGTTGCTTGACCGCAGGGGGAGTCCATGTAG
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1026 bp | 341 aa | 94 | 1119 | + | No |
Chemistry : DEDD
ORF sequence :
MNVTTIGIDLAKTVFSIHGTNQHGKVVVRKRLNRPKLLAFFAQLPPCLIGMEACSGAHYWARELTKLGHDARIIAPRFVAPYRKSSKNDDNDAEAICEAV
SRPNMRFVPIKTDDQQAVLCLHRIRRGLTKERTAQINQIRGLLAEFGLIIPQGRYHARHRIPEILEDAENGLPMLARRLLNNINQRILQLDEEILAYDRE
IEAMARRDEQAKRLMAIPGIGPQTATAILASAPDPRQFKSGRHFAAWLGLVPRQYSTGGKPRLGRITKRGDKYLRMLLIHGTRAVIAKLADKHDQLSQWA
KGLVERRGYKRAAVALAAKNARIIWALLMNQTEFKTQPAEG
SRPNMRFVPIKTDDQQAVLCLHRIRRGLTKERTAQINQIRGLLAEFGLIIPQGRYHARHRIPEILEDAENGLPMLARRLLNNINQRILQLDEEILAYDRE
IEAMARRDEQAKRLMAIPGIGPQTATAILASAPDPRQFKSGRHFAAWLGLVPRQYSTGGKPRLGRITKRGDKYLRMLLIHGTRAVIAKLADKHDQLSQWA
KGLVERRGYKRAAVALAAKNARIIWALLMNQTEFKTQPAEG
Blast result :
Comments
ISMahy7 is 79% aa similar to ISSpi2.
References
1] Sarah Sonbol (2020) Direct submission.
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Kiss,H., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Edwards,K. and Richardson,P. (200-) Direct submission GenBank.
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Kiss,H., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Edwards,K. and Richardson,P. (200-) Direct submission GenBank.