ISSsu15
- Family IS110
- Group IS1111
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP071697 | ND | Streptococcus suis | Streptococcus suis 1112S Streptococcus suis AH681 |
DNA section
IS Length : 1607 bp
Ends
IR Length : 10
IRL : aGACAATATGTAAAGACCCCCAGTTGAGAATTCGTGGATTTACCTGTACA
IRR : ----GATATGTAAAGCCCTTTGTCAAGTAAAAACAATCGAACTGATTAAA
Comments : IRs are not at the termini according to the rules of this group.
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ATGAATCAATATTTTAT | AGTCATTAGTTCGCAA | 0 |
DNA sequence
AGACAATATGTAAAGACCCCCAGTTGAGAATTCGTGGATTTACCTGTACACTAGAATAAAAAAACAATCAACTTCTAACAGGAATTACCACACTCAATTG
GAGGTCTTATATGTTTCATTTTACCACACTTTTCATCGGAATGGATGTTCACAAAGAAAGTTTTTCACTCTGCTATTATGATATGATGGCGAATCAATTC
AAACATAGCACTAAAGTTGGTCCAAATGTTAGCTATATTGTGAACTATGTGAATGAGCTTCGTCGTTTATATGGTCAAGATGCAGAAGTGTTATGTGGCT
ACGAAGCCGGATGTCTTGGATTTACCCTATATCACCAGCTACAAGCTCACGGGATTCCCTGTATCGTGATGGCGCCTACAACGGTGATGAAGGAAGGATC
TAAGCGTGTTAAGACTGATAAAAAAGATGCAGCTCAGCTCGCAAAAGCTCTGGCCTTTCGTAGCTATCGGCCTGTTCATATTCCTACTGTTGAGGATGAA
CAAGTCAAAGAATATATCCGCATGAGAACAGACCACAAAGTGGCTCTGAAGAAAATCAAACAACAAATTCTTGCCTTCTGTCTCCGACATGATTTTCGCT
ATACCGAGGGAAGCAGTAATTGGACACAGAAACATGTCCGCTGGCTCCGTTCCCTAAATCCTGATGGACTTTACGCAGAGATTTTGACAGAATATCTATT
GACCTATGAGAAATTAGTAGATCAAATAGAACGGTATGATGCACGAATTGAGCAACTGGGTCAAAGCGACAGTTATCAAGAGAAGGTCTCACGGCTTTCT
TGCTTTATTGGCATTAAAACACTAACTGCTCTTTCCATTGTGACAGAAATCGGTGATTTTAATCGCTTTGCGACAGCTCAACATTTTGCTTCTTATCTTG
GGCTAACTCCTAGCGAAAATTCTAGCGGCGACAAGGAGAGAAAAGGTGCTATCACCAAAGCTGGGAATAGCCATGTGAGACGACTTCTGATAGAAGCTGC
ACAATCATTGGCTAAGGGGACGATTGGGTATAAATCCAAAGAATTGAAAAGGAGACAAAGTGGAAACCGAGTGGAGGTGATTGCTTATGCGGATAAGGCT
AATGAACGCTTAAGAAGACGTTATCGCACACTTGTTCTAGGAAAAAATAAGAAACAAAATGTTGCTAAAACAGCTATTGCACGAGAATTGTCTGGTTTTA
TTTGGGGGATGATGACAGGAAGAATAGCTTGAAGTTAGCGCTTGTTTTCATGTACACTTTTGACCATTAAGTTTTATCATCGCAGAGCGATGAGGAATCC
CTATTTCTATCCAAAATCACTGGGTGAATTTGGACAGAAATAAGGATTGAAATCATGTTTGAATGGAAAGTATCTTGAAGGAGTTTAGGACTTCAAGGTT
TGAGTCATCTACGAAACGACTAAGTGGCACAATTGTGATCCACGCTTATAGAGAGTAGGACTCGCGGCAGAACCATTGACCTGTAGGTAACCAATCCACG
AATATCAGAGTGGCCAATGCCCGAAGCTAAGAACTAGGCTCTTTCTAGATACTTTTCATTTTTTAATCAGTTCGATTGTTTTTACTTGACAAAGGGCTTT
ACATATC
GAGGTCTTATATGTTTCATTTTACCACACTTTTCATCGGAATGGATGTTCACAAAGAAAGTTTTTCACTCTGCTATTATGATATGATGGCGAATCAATTC
AAACATAGCACTAAAGTTGGTCCAAATGTTAGCTATATTGTGAACTATGTGAATGAGCTTCGTCGTTTATATGGTCAAGATGCAGAAGTGTTATGTGGCT
ACGAAGCCGGATGTCTTGGATTTACCCTATATCACCAGCTACAAGCTCACGGGATTCCCTGTATCGTGATGGCGCCTACAACGGTGATGAAGGAAGGATC
TAAGCGTGTTAAGACTGATAAAAAAGATGCAGCTCAGCTCGCAAAAGCTCTGGCCTTTCGTAGCTATCGGCCTGTTCATATTCCTACTGTTGAGGATGAA
CAAGTCAAAGAATATATCCGCATGAGAACAGACCACAAAGTGGCTCTGAAGAAAATCAAACAACAAATTCTTGCCTTCTGTCTCCGACATGATTTTCGCT
ATACCGAGGGAAGCAGTAATTGGACACAGAAACATGTCCGCTGGCTCCGTTCCCTAAATCCTGATGGACTTTACGCAGAGATTTTGACAGAATATCTATT
GACCTATGAGAAATTAGTAGATCAAATAGAACGGTATGATGCACGAATTGAGCAACTGGGTCAAAGCGACAGTTATCAAGAGAAGGTCTCACGGCTTTCT
TGCTTTATTGGCATTAAAACACTAACTGCTCTTTCCATTGTGACAGAAATCGGTGATTTTAATCGCTTTGCGACAGCTCAACATTTTGCTTCTTATCTTG
GGCTAACTCCTAGCGAAAATTCTAGCGGCGACAAGGAGAGAAAAGGTGCTATCACCAAAGCTGGGAATAGCCATGTGAGACGACTTCTGATAGAAGCTGC
ACAATCATTGGCTAAGGGGACGATTGGGTATAAATCCAAAGAATTGAAAAGGAGACAAAGTGGAAACCGAGTGGAGGTGATTGCTTATGCGGATAAGGCT
AATGAACGCTTAAGAAGACGTTATCGCACACTTGTTCTAGGAAAAAATAAGAAACAAAATGTTGCTAAAACAGCTATTGCACGAGAATTGTCTGGTTTTA
TTTGGGGGATGATGACAGGAAGAATAGCTTGAAGTTAGCGCTTGTTTTCATGTACACTTTTGACCATTAAGTTTTATCATCGCAGAGCGATGAGGAATCC
CTATTTCTATCCAAAATCACTGGGTGAATTTGGACAGAAATAAGGATTGAAATCATGTTTGAATGGAAAGTATCTTGAAGGAGTTTAGGACTTCAAGGTT
TGAGTCATCTACGAAACGACTAAGTGGCACAATTGTGATCCACGCTTATAGAGAGTAGGACTCGCGGCAGAACCATTGACCTGTAGGTAACCAATCCACG
AATATCAGAGTGGCCAATGCCCGAAGCTAAGAACTAGGCTCTTTCTAGATACTTTTCATTTTTTAATCAGTTCGATTGTTTTTACTTGACAAAGGGCTTT
ACATATC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1122 bp | 373 aa | 111 | 1232 | + | No |
Chemistry : DEDD
ORF sequence :
MFHFTTLFIGMDVHKESFSLCYYDMMANQFKHSTKVGPNVSYIVNYVNELRRLYGQDAEVLCGYEAGCLGFTLYHQLQAHGIPCIVMAPTTVMKEGSKRV
KTDKKDAAQLAKALAFRSYRPVHIPTVEDEQVKEYIRMRTDHKVALKKIKQQILAFCLRHDFRYTEGSSNWTQKHVRWLRSLNPDGLYAEILTEYLLTYE
KLVDQIERYDARIEQLGQSDSYQEKVSRLSCFIGIKTLTALSIVTEIGDFNRFATAQHFASYLGLTPSENSSGDKERKGAITKAGNSHVRRLLIEAAQSL
AKGTIGYKSKELKRRQSGNRVEVIAYADKANERLRRRYRTLVLGKNKKQNVAKTAIARELSGFIWGMMTGRIA
KTDKKDAAQLAKALAFRSYRPVHIPTVEDEQVKEYIRMRTDHKVALKKIKQQILAFCLRHDFRYTEGSSNWTQKHVRWLRSLNPDGLYAEILTEYLLTYE
KLVDQIERYDARIEQLGQSDSYQEKVSRLSCFIGIKTLTALSIVTEIGDFNRFATAQHFASYLGLTPSENSSGDKERKGAITKAGNSHVRRLLIEAAQSL
AKGTIGYKSKELKRRQSGNRVEVIAYADKANERLRRRYRTLVLGKNKKQNVAKTAIARELSGFIWGMMTGRIA
Blast result :
Comments
ISSsu15 is 54% aa similar to ISSso6. There is an empty site in Streptococcus thermophilus strain ATCC 19258 (CP038020).
References
1] Yang Yingying (2021) Direct submission.
2] Yang,Y. and Hu,G. (2021) Direct GenBank submission.
2] Yang,Y. and Hu,G. (2021) Direct GenBank submission.