ISSsu15

  • Family IS110
  • Group IS1111
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP071697 ND Streptococcus suis
Streptococcus suis 1112S
Streptococcus suis AH681
DNA section
IS Length : 1607 bp

Ends


IR Length : 10

IRL : aGACAATATGTAAAGACCCCCAGTTGAGAATTCGTGGATTTACCTGTACA
IRR : ----GATATGTAAAGCCCTTTGTCAAGTAAAAACAATCGAACTGATTAAA

Comments : IRs are not at the termini according to the rules of this group.

Insertion site


Left flankDirect repeatRight flankDR Length
ATGAATCAATATTTTATAGTCATTAGTTCGCAA0

DNA sequence

AGACAATATGTAAAGACCCCCAGTTGAGAATTCGTGGATTTACCTGTACACTAGAATAAAAAAACAATCAACTTCTAACAGGAATTACCACACTCAATTG
GAGGTCTTATATGTTTCATTTTACCACACTTTTCATCGGAATGGATGTTCACAAAGAAAGTTTTTCACTCTGCTATTATGATATGATGGCGAATCAATTC
AAACATAGCACTAAAGTTGGTCCAAATGTTAGCTATATTGTGAACTATGTGAATGAGCTTCGTCGTTTATATGGTCAAGATGCAGAAGTGTTATGTGGCT
ACGAAGCCGGATGTCTTGGATTTACCCTATATCACCAGCTACAAGCTCACGGGATTCCCTGTATCGTGATGGCGCCTACAACGGTGATGAAGGAAGGATC
TAAGCGTGTTAAGACTGATAAAAAAGATGCAGCTCAGCTCGCAAAAGCTCTGGCCTTTCGTAGCTATCGGCCTGTTCATATTCCTACTGTTGAGGATGAA
CAAGTCAAAGAATATATCCGCATGAGAACAGACCACAAAGTGGCTCTGAAGAAAATCAAACAACAAATTCTTGCCTTCTGTCTCCGACATGATTTTCGCT
ATACCGAGGGAAGCAGTAATTGGACACAGAAACATGTCCGCTGGCTCCGTTCCCTAAATCCTGATGGACTTTACGCAGAGATTTTGACAGAATATCTATT
GACCTATGAGAAATTAGTAGATCAAATAGAACGGTATGATGCACGAATTGAGCAACTGGGTCAAAGCGACAGTTATCAAGAGAAGGTCTCACGGCTTTCT
TGCTTTATTGGCATTAAAACACTAACTGCTCTTTCCATTGTGACAGAAATCGGTGATTTTAATCGCTTTGCGACAGCTCAACATTTTGCTTCTTATCTTG
GGCTAACTCCTAGCGAAAATTCTAGCGGCGACAAGGAGAGAAAAGGTGCTATCACCAAAGCTGGGAATAGCCATGTGAGACGACTTCTGATAGAAGCTGC
ACAATCATTGGCTAAGGGGACGATTGGGTATAAATCCAAAGAATTGAAAAGGAGACAAAGTGGAAACCGAGTGGAGGTGATTGCTTATGCGGATAAGGCT
AATGAACGCTTAAGAAGACGTTATCGCACACTTGTTCTAGGAAAAAATAAGAAACAAAATGTTGCTAAAACAGCTATTGCACGAGAATTGTCTGGTTTTA
TTTGGGGGATGATGACAGGAAGAATAGCTTGAAGTTAGCGCTTGTTTTCATGTACACTTTTGACCATTAAGTTTTATCATCGCAGAGCGATGAGGAATCC
CTATTTCTATCCAAAATCACTGGGTGAATTTGGACAGAAATAAGGATTGAAATCATGTTTGAATGGAAAGTATCTTGAAGGAGTTTAGGACTTCAAGGTT
TGAGTCATCTACGAAACGACTAAGTGGCACAATTGTGATCCACGCTTATAGAGAGTAGGACTCGCGGCAGAACCATTGACCTGTAGGTAACCAATCCACG
AATATCAGAGTGGCCAATGCCCGAAGCTAAGAACTAGGCTCTTTCTAGATACTTTTCATTTTTTAATCAGTTCGATTGTTTTTACTTGACAAAGGGCTTT
ACATATC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1122 bp373 aa1111232+No
ORF function : Transposase
Chemistry : DEDD

ORF sequence :

MFHFTTLFIGMDVHKESFSLCYYDMMANQFKHSTKVGPNVSYIVNYVNELRRLYGQDAEVLCGYEAGCLGFTLYHQLQAHGIPCIVMAPTTVMKEGSKRV
KTDKKDAAQLAKALAFRSYRPVHIPTVEDEQVKEYIRMRTDHKVALKKIKQQILAFCLRHDFRYTEGSSNWTQKHVRWLRSLNPDGLYAEILTEYLLTYE
KLVDQIERYDARIEQLGQSDSYQEKVSRLSCFIGIKTLTALSIVTEIGDFNRFATAQHFASYLGLTPSENSSGDKERKGAITKAGNSHVRRLLIEAAQSL
AKGTIGYKSKELKRRQSGNRVEVIAYADKANERLRRRYRTLVLGKNKKQNVAKTAIARELSGFIWGMMTGRIA

 

Blast result :
Comments
ISSsu15 is 54% aa similar to ISSso6. There is an empty site in Streptococcus thermophilus strain ATCC 19258 (CP038020).
References
1] Yang Yingying (2021) Direct submission.
2] Yang,Y. and Hu,G. (2021) Direct GenBank submission.