ISLmo14
- Family IS6
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| KY613742.1 | ND | Listeria monocytogenes | Listeria monocytogenes Listeria monocytogenes strain 38/04 Listeria monocytogenes strain LM-F-12 Enterococcus durans strain KLDS 6.0930 |
DNA section
IS Length : 812 bp
Ends
IR Length : 20/25
IRL : GGTTCTGTTGCAAAGTTTTTCAATCAAGACCTTTTAGTGTAAAATCTAAC
IRR : GGTTCTGTTGCAAAGCGTCTCTAGCTAAAGACAATTTCCTTAAGCTTACT
Comments : Ends based on similar IS present in ISfinder database.
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| ctgtttctcttttaaaggat | gttctggcaaaggttccatt | 0 |
DNA sequence
GGTTCTGTTGCAAAGTTTTTCAATCAAGACCTTTTAGTGTAAAATCTAACTAAAATGACCCGGGAGGAACGAAGATATGAACCCTTTTAAAGGAAAACAA
TTCCAAGAAGACGTGATTATTGTGGCTGTCGGTTATTATCTTCGCTATAACCTCAGTTATCGTGAAGTTCAAGAAATTCTCTATGATCGTGGCATTGAGG
TCTGTCATACAACCATTTACCGTTGGGTTCAGGAATACGGAAAGTTACTTTATCAGATCTGGAAAAAGAAAAACAAGCAGTCTTTTTATTCATGGAAGAT
GGACGAAACCTATATCAAAATTAAAGGCAAGTGGCATTATCTGTATCGAGCCATCGATGCAGATGGCTTAACCTTAGATATATGGCTACGAAAAAAACGC
AATACACAAGCTGCGTATGCGTTCTTAAAGAGACTGTTCAACCATTTTGGAGAACCAAAGGTTCTCGTTACTGATAAAGCACCGTCGATTTCCTGTGCCT
TCAAAAAGTTGCAGAATCATGGGTTTTATCAACATACAGAACATCGAACCGTAAAATATTTAAACAATTTGATTGAACAAGATCATCGACCAATCAAGCG
TAGAAATAAATTCTATCGAAGCTTACGTACCGCTGCGACCACGATCAAAGGGATGGAAACCATTCGAGGACTATATAAGAAAAGCCGAAAAGAAGGGTCC
CTTTTTGGTTTTTCAGTGTGTCTTGAAATCAAAGGATTACTAGGCATCCCGGCTTGATCGATAGTAAGCTTAAGGAAATTGTCTTTAGCTAGAGACGCTT
TGCAACAGAACC
TTCCAAGAAGACGTGATTATTGTGGCTGTCGGTTATTATCTTCGCTATAACCTCAGTTATCGTGAAGTTCAAGAAATTCTCTATGATCGTGGCATTGAGG
TCTGTCATACAACCATTTACCGTTGGGTTCAGGAATACGGAAAGTTACTTTATCAGATCTGGAAAAAGAAAAACAAGCAGTCTTTTTATTCATGGAAGAT
GGACGAAACCTATATCAAAATTAAAGGCAAGTGGCATTATCTGTATCGAGCCATCGATGCAGATGGCTTAACCTTAGATATATGGCTACGAAAAAAACGC
AATACACAAGCTGCGTATGCGTTCTTAAAGAGACTGTTCAACCATTTTGGAGAACCAAAGGTTCTCGTTACTGATAAAGCACCGTCGATTTCCTGTGCCT
TCAAAAAGTTGCAGAATCATGGGTTTTATCAACATACAGAACATCGAACCGTAAAATATTTAAACAATTTGATTGAACAAGATCATCGACCAATCAAGCG
TAGAAATAAATTCTATCGAAGCTTACGTACCGCTGCGACCACGATCAAAGGGATGGAAACCATTCGAGGACTATATAAGAAAAGCCGAAAAGAAGGGTCC
CTTTTTGGTTTTTCAGTGTGTCTTGAAATCAAAGGATTACTAGGCATCCCGGCTTGATCGATAGTAAGCTTAAGGAAATTGTCTTTAGCTAGAGACGCTT
TGCAACAGAACC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 681 bp | 226 aa | 77 | 757 | + | No |
Chemistry : DDE
ORF sequence :
MNPFKGKQFQEDVIIVAVGYYLRYNLSYREVQEILYDRGIEVCHTTIYRWVQEYGKLLYQIWKKKNKQSFYSWKMDETYIKIKGKWHYLYRAIDADGLTL
DIWLRKKRNTQAAYAFLKRLFNHFGEPKVLVTDKAPSISCAFKKLQNHGFYQHTEHRTVKYLNNLIEQDHRPIKRRNKFYRSLRTAATTIKGMETIRGLY
KKSRKEGSLFGFSVCLEIKGLLGIPA
DIWLRKKRNTQAAYAFLKRLFNHFGEPKVLVTDKAPSISCAFKKLQNHGFYQHTEHRTVKYLNNLIEQDHRPIKRRNKFYRSLRTAATTIKGMETIRGLY
KKSRKEGSLFGFSVCLEIKGLLGIPA
Blast result :
Comments
ISLmo14 was identified by in silico sequence analysis of Listeria monocytogenes plasmids.
ISLmo14 is 94% aa similar to ISEnfa1.
ISLmo14 is 94% aa similar to ISEnfa1.
References
1] Chmielowska, C. and Bartosik, D. (2020) Direct submission.