ISLmo13

  • Family IS6
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
KY613742.1 ND Listeria monocytogenes
Listeria monocytogenes
Listeria monocytogenes strain 38/04
Listeria monocytogenes strain LM-F-12
DNA section
IS Length : 809 bp

Ends


IR Length : 18

IRL : GGTTCTGTTGCAAAGTTTCCGATAAGCTCATTTTGAGGTAAAATAATTGA
IRR : GGTTCTGTTGCAAAGTTTTAAATAAAGAATAAAATCCCTTACGGTATCTA

Insertion site


Left flankDirect repeatRight flankDR Length
GTGTGGTTGGTTAAAAAATTTAAATGAGGACTTTGATACGA0

DNA sequence

GGTTCTGTTGCAAAGTTTCCGATAAGCTCATTTTGAGGTAAAATAATTGAAAAAGATAGCTTGGAGGAATGAAGATGACTCAGTTCAAAGGAAAACAATT
TCAAAAAGACGTGATTATCGTAGCCGTCGGCTACTATCTTCGGTACAACCTGAGTTATCGTGAAGTGCAGGAAATTCTGTATGACCGAGGAATTCACGTT
TGTCACACCACAATTTACCGTTGGGTGCAAGAATACGGAAAGATTCTTTATCAAATTTGGAAAAAGAAAAACAAACAGTCCTTTTATTCATGGAAAATGG
ACGAGACTTATATCAAAATTAAAGGAAAGTGGCATTATTTATATCGCGCTATCGATGTAGATGGCTTAACCTTAGATATCTGGTTACGGAAAAAGCGCGA
CACACAGGCTGCGTATGCTTTTCTAAAACGACTGAAGAACCAGTTTGGAGAACCAAAGGTTCTAGTAACGGATAAAGCACCCTCTATTAAGAGTGCCTTC
AGAAAGCTTCAGAAAAATGGACTGTATATAACAACAGAACATCGAACAATCAAGTATCTGAATAATCTGATTGAACAAGATCATCGTCCAGTAAAGAGAC
GCAATAAATTCTATCGAAGTTTACGCACTGCCTCTACCACGATTAAAGGCATGGAAGCCATTCGAGGATTATATAAGAAAACCCGAAAAGAAGGCACTCT
CTTCGGCTTTTCGGTGTCTACTGAAATCAAGGTATTATTGGGAATCCCAGCTTAAATCATAGATACCGTAAGGGATTTTATTCTTTATTTAAAACTTTGC
AACAGAACC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
681 bp226 aa75755+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MTQFKGKQFQKDVIIVAVGYYLRYNLSYREVQEILYDRGIHVCHTTIYRWVQEYGKILYQIWKKKNKQSFYSWKMDETYIKIKGKWHYLYRAIDVDGLTL
DIWLRKKRDTQAAYAFLKRLKNQFGEPKVLVTDKAPSIKSAFRKLQKNGLYITTEHRTIKYLNNLIEQDHRPVKRRNKFYRSLRTASTTIKGMEAIRGLY
KKTRKEGTLFGFSVSTEIKVLLGIPA

 

Blast result :
Comments
ISLmo13 was identified by in silico sequence analysis of Listeria monocytogenes plasmids.
ISLmo10 is 96% aa similar to ISEnfa1.
References
1] Chmielowska, C. and Bartosik, D. (2020) Direct submission.