ISLmo13
- Family IS6
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
KY613742.1 | ND | Listeria monocytogenes | Listeria monocytogenes Listeria monocytogenes strain 38/04 Listeria monocytogenes strain LM-F-12 |
DNA section
IS Length : 809 bp
Ends
IR Length : 18
IRL : GGTTCTGTTGCAAAGTTTCCGATAAGCTCATTTTGAGGTAAAATAATTGA
IRR : GGTTCTGTTGCAAAGTTTTAAATAAAGAATAAAATCCCTTACGGTATCTA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GTGTGGTTGGTTAAAAAATT | TAAATGAGGACTTTGATACGA | 0 |
DNA sequence
GGTTCTGTTGCAAAGTTTCCGATAAGCTCATTTTGAGGTAAAATAATTGAAAAAGATAGCTTGGAGGAATGAAGATGACTCAGTTCAAAGGAAAACAATT
TCAAAAAGACGTGATTATCGTAGCCGTCGGCTACTATCTTCGGTACAACCTGAGTTATCGTGAAGTGCAGGAAATTCTGTATGACCGAGGAATTCACGTT
TGTCACACCACAATTTACCGTTGGGTGCAAGAATACGGAAAGATTCTTTATCAAATTTGGAAAAAGAAAAACAAACAGTCCTTTTATTCATGGAAAATGG
ACGAGACTTATATCAAAATTAAAGGAAAGTGGCATTATTTATATCGCGCTATCGATGTAGATGGCTTAACCTTAGATATCTGGTTACGGAAAAAGCGCGA
CACACAGGCTGCGTATGCTTTTCTAAAACGACTGAAGAACCAGTTTGGAGAACCAAAGGTTCTAGTAACGGATAAAGCACCCTCTATTAAGAGTGCCTTC
AGAAAGCTTCAGAAAAATGGACTGTATATAACAACAGAACATCGAACAATCAAGTATCTGAATAATCTGATTGAACAAGATCATCGTCCAGTAAAGAGAC
GCAATAAATTCTATCGAAGTTTACGCACTGCCTCTACCACGATTAAAGGCATGGAAGCCATTCGAGGATTATATAAGAAAACCCGAAAAGAAGGCACTCT
CTTCGGCTTTTCGGTGTCTACTGAAATCAAGGTATTATTGGGAATCCCAGCTTAAATCATAGATACCGTAAGGGATTTTATTCTTTATTTAAAACTTTGC
AACAGAACC
TCAAAAAGACGTGATTATCGTAGCCGTCGGCTACTATCTTCGGTACAACCTGAGTTATCGTGAAGTGCAGGAAATTCTGTATGACCGAGGAATTCACGTT
TGTCACACCACAATTTACCGTTGGGTGCAAGAATACGGAAAGATTCTTTATCAAATTTGGAAAAAGAAAAACAAACAGTCCTTTTATTCATGGAAAATGG
ACGAGACTTATATCAAAATTAAAGGAAAGTGGCATTATTTATATCGCGCTATCGATGTAGATGGCTTAACCTTAGATATCTGGTTACGGAAAAAGCGCGA
CACACAGGCTGCGTATGCTTTTCTAAAACGACTGAAGAACCAGTTTGGAGAACCAAAGGTTCTAGTAACGGATAAAGCACCCTCTATTAAGAGTGCCTTC
AGAAAGCTTCAGAAAAATGGACTGTATATAACAACAGAACATCGAACAATCAAGTATCTGAATAATCTGATTGAACAAGATCATCGTCCAGTAAAGAGAC
GCAATAAATTCTATCGAAGTTTACGCACTGCCTCTACCACGATTAAAGGCATGGAAGCCATTCGAGGATTATATAAGAAAACCCGAAAAGAAGGCACTCT
CTTCGGCTTTTCGGTGTCTACTGAAATCAAGGTATTATTGGGAATCCCAGCTTAAATCATAGATACCGTAAGGGATTTTATTCTTTATTTAAAACTTTGC
AACAGAACC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
681 bp | 226 aa | 75 | 755 | + | No |
Chemistry : DDE
ORF sequence :
MTQFKGKQFQKDVIIVAVGYYLRYNLSYREVQEILYDRGIHVCHTTIYRWVQEYGKILYQIWKKKNKQSFYSWKMDETYIKIKGKWHYLYRAIDVDGLTL
DIWLRKKRDTQAAYAFLKRLKNQFGEPKVLVTDKAPSIKSAFRKLQKNGLYITTEHRTIKYLNNLIEQDHRPVKRRNKFYRSLRTASTTIKGMEAIRGLY
KKTRKEGTLFGFSVSTEIKVLLGIPA
DIWLRKKRDTQAAYAFLKRLKNQFGEPKVLVTDKAPSIKSAFRKLQKNGLYITTEHRTIKYLNNLIEQDHRPVKRRNKFYRSLRTASTTIKGMEAIRGLY
KKTRKEGTLFGFSVSTEIKVLLGIPA
Blast result :
Comments
ISLmo13 was identified by in silico sequence analysis of Listeria monocytogenes plasmids.
ISLmo10 is 96% aa similar to ISEnfa1.
ISLmo10 is 96% aa similar to ISEnfa1.
References
1] Chmielowska, C. and Bartosik, D. (2020) Direct submission.