ISAba58
- Family IS256
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| ND | Acinetobacter baumannii | Acinetobacter baumannii Acinetobacter sp. WCHAc010034 |
DNA section
IS Length : 1379 bp
Ends
IR Length : 21/27
IRL : GAGCTATAGTCATTTGTGGTGTATGAGGGGAAAAGAGGGTGGCGTATCCT
IRR : GAGTTATGGTCAAATCTGGTGTACGAGCATCAGGCGGTTTTCCTGTCTGA
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| TTCATGGGTACTGCCT | TTCAAAAAG | TAGCCATAACCACTGTA | 9 |
DNA sequence
GAGCTATAGTCATTTGTGGTGTATGAGGGGAAAAGAGGGTGGCGTATCCTGTTGATTGTTTCCTCCAAGAAATAATTAACAGTAGAGCGATACGCCATGA
CAAATATTACCCTGAATGTTCTTTCACAACCAGATGAAACTGGCACTGATGTGCTAACTGCTTTATTGCGTAATGGTGCTCGTCAGCTCATTGCGCAAGC
AGTTGAAGTAGAGCTGCAGCAACTGCTGCAAGCTCATGAAGAACTGCGTTTACCCGATGGCCGCAAAGCTGTGGTGCGTAACGGCTATTTGCCTGAGCGC
AGCATCCAAACGGGCATTGGCGATGTTGATATCAAGGTGCCAAAAGTGCGTGATCGTAGCGGCTCTGGTATTCGTTTTACCAGCGCACTGCTACCGCCAT
ACCTCAAGCGTGCCCGCAGCGTTGAAGAGTTATTACCGTGGCTGTATCTCAAAGGTATTTCCACTGGAGACTACCAAGAAGCCCTTGCAGCCTTGCTGGG
TGAGAATGCCAAAGGTCTGTCAGCTAACACCATTTCCAGGCTCAAGGAACGCTGGATTGATGAGCACCGAGAGTGGCGACAGCGCGATTTGAGTGACAAG
CGCTACGCGTACCTTTGGGTTGACGGTATTTACAGCAACGTCCGCCTCGATGACCGTTTGTGCTTGCTGGTGGTGATGGGCGTGACAGAGCATGGTCGCA
AGGAGCTGATTGCCGTTGAGGAAGGCTATCGCGAGTCTGAAGCCAGCTGGCTTGAGCTGCTGAATGGCCTGGTTGCGCGTGGGCTTACGACCTGCCCAAA
GCTGGCAATAGCTGACGGCGCCTTGGGCTTCTGGAAAGCCCTGAGTAAGGTCTATCCGCAGACCAAACAACAACGCTGTTGGGTGCATAAAACGGCCAAT
GTGCTCAACAAACTGCCCAAAGCAGTACAGCCCAAAGTAAAAGAAGCACTGCATGATATCTGGATGGCAGAGACGCGTGAGAAGGCTCATAAAGCCTTTG
ATATAGCGCTGGAAAGGTTTACTGCTAAGTACCCACGCGCAATGGAATGCTTAGCTAAAGACCGTGAGAGCATGTTGGCTTTCTACGATTTTCCAGCAGA
ACATTGGGTGAGTATACGCACCACCAACCCAATTGAATCTGCCTTCGCTACAGTACGTTTAAGAACCAGCAAAACCCGCAATTGCGGTTCAAGAAACACA
ACCCTAGCAATGGTTTATAAATTGCTGCAATCAGCGCAGAAGCGCTGGAACCGCCTGAAAGGATTTCAACTGCTAACCCTCGTGGTCAATAACGTTAAAT
TCCAAGACGGCGAACAAGTAATGGAGCAATCAGACAGGAAAACCGCCTGATGCTCGTACACCAGATTTGACCATAACTC
CAAATATTACCCTGAATGTTCTTTCACAACCAGATGAAACTGGCACTGATGTGCTAACTGCTTTATTGCGTAATGGTGCTCGTCAGCTCATTGCGCAAGC
AGTTGAAGTAGAGCTGCAGCAACTGCTGCAAGCTCATGAAGAACTGCGTTTACCCGATGGCCGCAAAGCTGTGGTGCGTAACGGCTATTTGCCTGAGCGC
AGCATCCAAACGGGCATTGGCGATGTTGATATCAAGGTGCCAAAAGTGCGTGATCGTAGCGGCTCTGGTATTCGTTTTACCAGCGCACTGCTACCGCCAT
ACCTCAAGCGTGCCCGCAGCGTTGAAGAGTTATTACCGTGGCTGTATCTCAAAGGTATTTCCACTGGAGACTACCAAGAAGCCCTTGCAGCCTTGCTGGG
TGAGAATGCCAAAGGTCTGTCAGCTAACACCATTTCCAGGCTCAAGGAACGCTGGATTGATGAGCACCGAGAGTGGCGACAGCGCGATTTGAGTGACAAG
CGCTACGCGTACCTTTGGGTTGACGGTATTTACAGCAACGTCCGCCTCGATGACCGTTTGTGCTTGCTGGTGGTGATGGGCGTGACAGAGCATGGTCGCA
AGGAGCTGATTGCCGTTGAGGAAGGCTATCGCGAGTCTGAAGCCAGCTGGCTTGAGCTGCTGAATGGCCTGGTTGCGCGTGGGCTTACGACCTGCCCAAA
GCTGGCAATAGCTGACGGCGCCTTGGGCTTCTGGAAAGCCCTGAGTAAGGTCTATCCGCAGACCAAACAACAACGCTGTTGGGTGCATAAAACGGCCAAT
GTGCTCAACAAACTGCCCAAAGCAGTACAGCCCAAAGTAAAAGAAGCACTGCATGATATCTGGATGGCAGAGACGCGTGAGAAGGCTCATAAAGCCTTTG
ATATAGCGCTGGAAAGGTTTACTGCTAAGTACCCACGCGCAATGGAATGCTTAGCTAAAGACCGTGAGAGCATGTTGGCTTTCTACGATTTTCCAGCAGA
ACATTGGGTGAGTATACGCACCACCAACCCAATTGAATCTGCCTTCGCTACAGTACGTTTAAGAACCAGCAAAACCCGCAATTGCGGTTCAAGAAACACA
ACCCTAGCAATGGTTTATAAATTGCTGCAATCAGCGCAGAAGCGCTGGAACCGCCTGAAAGGATTTCAACTGCTAACCCTCGTGGTCAATAACGTTAAAT
TCCAAGACGGCGAACAAGTAATGGAGCAATCAGACAGGAAAACCGCCTGATGCTCGTACACCAGATTTGACCATAACTC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1254 bp | 417 aa | 97 | 1350 | + | No |
Chemistry : DDE
ORF sequence :
MTNITLNVLSQPDETGTDVLTALLRNGARQLIAQAVEVELQQLLQAHEELRLPDGRKAVVRNGYLPERSIQTGIGDVDIKVPKVRDRSGSGIRFTSALLP
PYLKRARSVEELLPWLYLKGISTGDYQEALAALLGENAKGLSANTISRLKERWIDEHREWRQRDLSDKRYAYLWVDGIYSNVRLDDRLCLLVVMGVTEHG
RKELIAVEEGYRESEASWLELLNGLVARGLTTCPKLAIADGALGFWKALSKVYPQTKQQRCWVHKTANVLNKLPKAVQPKVKEALHDIWMAETREKAHKA
FDIALERFTAKYPRAMECLAKDRESMLAFYDFPAEHWVSIRTTNPIESAFATVRLRTSKTRNCGSRNTTLAMVYKLLQSAQKRWNRLKGFQLLTLVVNNV
KFQDGEQVMEQSDRKTA
PYLKRARSVEELLPWLYLKGISTGDYQEALAALLGENAKGLSANTISRLKERWIDEHREWRQRDLSDKRYAYLWVDGIYSNVRLDDRLCLLVVMGVTEHG
RKELIAVEEGYRESEASWLELLNGLVARGLTTCPKLAIADGALGFWKALSKVYPQTKQQRCWVHKTANVLNKLPKAVQPKVKEALHDIWMAETREKAHKA
FDIALERFTAKYPRAMECLAKDRESMLAFYDFPAEHWVSIRTTNPIESAFATVRLRTSKTRNCGSRNTTLAMVYKLLQSAQKRWNRLKGFQLLTLVVNNV
KFQDGEQVMEQSDRKTA
Blast result :
Comments
ISAba58 is 87% aa similar to ISMaq7.
This IS element was found in 4 related A. baumannii isolated from four separate patients. The IS element was located within the intrinsic blaOXA-51-like gene.
This IS element was found in 4 related A. baumannii isolated from four separate patients. The IS element was located within the intrinsic blaOXA-51-like gene.
References
1] Paul Higgins (2020) Direct submission.