ISChja2
- Family IS30
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
LN651368.1 | ND | Chromohalobacter japonicus | Chromohalobacter japonicus CJ |
DNA section
IS Length : 1098 bp
Ends
IR Length : 22/25
IRL : GGCGGTCTCAATGACCAAGTGCAACACGTAACCCATCAGGTACCGTGTTG
IRR : GGCGGTCTCAAGTTCCAAGTGCAACGCTATTGAAGGATGCTCGGACCTTC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GCGGAGCACC | ACC | ACCCCTTCAA | 3 |
CACTTACAAC | AAC | AACCCTCGCC | 3 |
DNA sequence
GGCGGTCTCAATGACCAAGTGCAACACGTAACCCATCAGGTACCGTGTTGCCATGAACTACTGCTATCGCCACCTTACTGCTGAAGACCGAGCTGCCATC
ATGATGATGCGAGCGACTCACTCGATCCGAGCTATTGCCTGTCATCTGGGCCGTGCCCCGAGTACCGTATCGCGTGAAATCGCTCGCCATACGGTTGACT
CCATCAAGGGCTACGATGCCAGCCTCGCAGGCTACCGGGCCCGCCTAACGCGTCATTGGCCACGTCAGCGCCCCAAGCTGCATCCCGACGGAGAGTTGTT
CGAGGTCGTGATCCATCTGCTGCGCAAGTACTGGTCACCGCAACAGATAGCACGCACACTGAAGCGCATGTCTCCCAACGATTCACGTCGCCAAGTCTCT
CACGAGGCCATCTATAACGCGCTCTATGTCATGCCCCGCGGTAGCCTCAAGAAGGAGCTTATCGCCTGCCTGCGGCAGGGCAACGGCAAGCGTCGGCCAA
GAAACCGTGGTACAGATCGACGCCAGCAGATCCCCGATCTGGTCAGCATCCACGCACGACCGCCTGATATCGAAGACCGTCTGATGCCTGGCCACTGGGA
AGGCGATCTCATCATCGGCGCCAACAACCGTTCTGCCGTCGGTACGCTGGTGGAGCGCACCACCCGACTGGTCATTCTCGCGAAAGTGGATGGGACCACC
GCCACAGCCGCCGCCGTTGGCTTCAGCGACAAGCTCAATGAAGTACCACGTTCGCTGCGGCTGTCGATGACCTACGATCAGGGCAGAGAGATGGTAAAAC
ATGCCGAGATCACCCAGAAGACCGGGACGGCGATCTACTTCGCTGACCCGCATAGCCCATGGCAGCGGGGCTCCAATGAGAATACCAATGGTCTGTTGCG
GCAGTACCTGCCTAAAGGGACTGACCTATCCGTTTACAGCCAGGAAGAACTCGACAAGATCGCCGACTCACTGAACACGCGGCCGCGCAAAACCCTGGAC
TGGCGAACGCCACTGGAAGTCTACGCCGAGGTGCTCAAGAAATCGGTCGAAGGTCCGAGCATCCTTCAATAGCGTTGCACTTGGAACTTGAGACCGCC
ATGATGATGCGAGCGACTCACTCGATCCGAGCTATTGCCTGTCATCTGGGCCGTGCCCCGAGTACCGTATCGCGTGAAATCGCTCGCCATACGGTTGACT
CCATCAAGGGCTACGATGCCAGCCTCGCAGGCTACCGGGCCCGCCTAACGCGTCATTGGCCACGTCAGCGCCCCAAGCTGCATCCCGACGGAGAGTTGTT
CGAGGTCGTGATCCATCTGCTGCGCAAGTACTGGTCACCGCAACAGATAGCACGCACACTGAAGCGCATGTCTCCCAACGATTCACGTCGCCAAGTCTCT
CACGAGGCCATCTATAACGCGCTCTATGTCATGCCCCGCGGTAGCCTCAAGAAGGAGCTTATCGCCTGCCTGCGGCAGGGCAACGGCAAGCGTCGGCCAA
GAAACCGTGGTACAGATCGACGCCAGCAGATCCCCGATCTGGTCAGCATCCACGCACGACCGCCTGATATCGAAGACCGTCTGATGCCTGGCCACTGGGA
AGGCGATCTCATCATCGGCGCCAACAACCGTTCTGCCGTCGGTACGCTGGTGGAGCGCACCACCCGACTGGTCATTCTCGCGAAAGTGGATGGGACCACC
GCCACAGCCGCCGCCGTTGGCTTCAGCGACAAGCTCAATGAAGTACCACGTTCGCTGCGGCTGTCGATGACCTACGATCAGGGCAGAGAGATGGTAAAAC
ATGCCGAGATCACCCAGAAGACCGGGACGGCGATCTACTTCGCTGACCCGCATAGCCCATGGCAGCGGGGCTCCAATGAGAATACCAATGGTCTGTTGCG
GCAGTACCTGCCTAAAGGGACTGACCTATCCGTTTACAGCCAGGAAGAACTCGACAAGATCGCCGACTCACTGAACACGCGGCCGCGCAAAACCCTGGAC
TGGCGAACGCCACTGGAAGTCTACGCCGAGGTGCTCAAGAAATCGGTCGAAGGTCCGAGCATCCTTCAATAGCGTTGCACTTGGAACTTGAGACCGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1020 bp | 339 aa | 53 | 1072 | + | No |
Chemistry : DDE
ORF sequence :
MNYCYRHLTAEDRAAIMMMRATHSIRAIACHLGRAPSTVSREIARHTVDSIKGYDASLAGYRARLTRHWPRQRPKLHPDGELFEVVIHLLRKYWSPQQIA
RTLKRMSPNDSRRQVSHEAIYNALYVMPRGSLKKELIACLRQGNGKRRPRNRGTDRRQQIPDLVSIHARPPDIEDRLMPGHWEGDLIIGANNRSAVGTLV
ERTTRLVILAKVDGTTATAAAVGFSDKLNEVPRSLRLSMTYDQGREMVKHAEITQKTGTAIYFADPHSPWQRGSNENTNGLLRQYLPKGTDLSVYSQEEL
DKIADSLNTRPRKTLDWRTPLEVYAEVLKKSVEGPSILQ
RTLKRMSPNDSRRQVSHEAIYNALYVMPRGSLKKELIACLRQGNGKRRPRNRGTDRRQQIPDLVSIHARPPDIEDRLMPGHWEGDLIIGANNRSAVGTLV
ERTTRLVILAKVDGTTATAAAVGFSDKLNEVPRSLRLSMTYDQGREMVKHAEITQKTGTAIYFADPHSPWQRGSNENTNGLLRQYLPKGTDLSVYSQEEL
DKIADSLNTRPRKTLDWRTPLEVYAEVLKKSVEGPSILQ
Blast result :
Comments
ISChja2 is 74% aa similar to ISPfl2.
Found nearby an integron and within a CALIN in Chromohalobacter japonicus CJ.
Found nearby an integron and within a CALIN in Chromohalobacter japonicus CJ.
References
1] Sarah Sonbol (2020) Direct submission.
2] Urmite Genomes (2014) Direct GenBank submission.
2] Urmite Genomes (2014) Direct GenBank submission.