ISChja2

  • Family IS30
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
LN651368.1 ND Chromohalobacter japonicus
Chromohalobacter japonicus CJ
DNA section
IS Length : 1098 bp

Ends


IR Length : 22/25

IRL : GGCGGTCTCAATGACCAAGTGCAACACGTAACCCATCAGGTACCGTGTTG
IRR : GGCGGTCTCAAGTTCCAAGTGCAACGCTATTGAAGGATGCTCGGACCTTC

Insertion site


Left flankDirect repeatRight flankDR Length
GCGGAGCACCACCACCCCTTCAA3
CACTTACAACAACAACCCTCGCC3

DNA sequence

GGCGGTCTCAATGACCAAGTGCAACACGTAACCCATCAGGTACCGTGTTGCCATGAACTACTGCTATCGCCACCTTACTGCTGAAGACCGAGCTGCCATC
ATGATGATGCGAGCGACTCACTCGATCCGAGCTATTGCCTGTCATCTGGGCCGTGCCCCGAGTACCGTATCGCGTGAAATCGCTCGCCATACGGTTGACT
CCATCAAGGGCTACGATGCCAGCCTCGCAGGCTACCGGGCCCGCCTAACGCGTCATTGGCCACGTCAGCGCCCCAAGCTGCATCCCGACGGAGAGTTGTT
CGAGGTCGTGATCCATCTGCTGCGCAAGTACTGGTCACCGCAACAGATAGCACGCACACTGAAGCGCATGTCTCCCAACGATTCACGTCGCCAAGTCTCT
CACGAGGCCATCTATAACGCGCTCTATGTCATGCCCCGCGGTAGCCTCAAGAAGGAGCTTATCGCCTGCCTGCGGCAGGGCAACGGCAAGCGTCGGCCAA
GAAACCGTGGTACAGATCGACGCCAGCAGATCCCCGATCTGGTCAGCATCCACGCACGACCGCCTGATATCGAAGACCGTCTGATGCCTGGCCACTGGGA
AGGCGATCTCATCATCGGCGCCAACAACCGTTCTGCCGTCGGTACGCTGGTGGAGCGCACCACCCGACTGGTCATTCTCGCGAAAGTGGATGGGACCACC
GCCACAGCCGCCGCCGTTGGCTTCAGCGACAAGCTCAATGAAGTACCACGTTCGCTGCGGCTGTCGATGACCTACGATCAGGGCAGAGAGATGGTAAAAC
ATGCCGAGATCACCCAGAAGACCGGGACGGCGATCTACTTCGCTGACCCGCATAGCCCATGGCAGCGGGGCTCCAATGAGAATACCAATGGTCTGTTGCG
GCAGTACCTGCCTAAAGGGACTGACCTATCCGTTTACAGCCAGGAAGAACTCGACAAGATCGCCGACTCACTGAACACGCGGCCGCGCAAAACCCTGGAC
TGGCGAACGCCACTGGAAGTCTACGCCGAGGTGCTCAAGAAATCGGTCGAAGGTCCGAGCATCCTTCAATAGCGTTGCACTTGGAACTTGAGACCGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1020 bp339 aa531072+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MNYCYRHLTAEDRAAIMMMRATHSIRAIACHLGRAPSTVSREIARHTVDSIKGYDASLAGYRARLTRHWPRQRPKLHPDGELFEVVIHLLRKYWSPQQIA
RTLKRMSPNDSRRQVSHEAIYNALYVMPRGSLKKELIACLRQGNGKRRPRNRGTDRRQQIPDLVSIHARPPDIEDRLMPGHWEGDLIIGANNRSAVGTLV
ERTTRLVILAKVDGTTATAAAVGFSDKLNEVPRSLRLSMTYDQGREMVKHAEITQKTGTAIYFADPHSPWQRGSNENTNGLLRQYLPKGTDLSVYSQEEL
DKIADSLNTRPRKTLDWRTPLEVYAEVLKKSVEGPSILQ

 

Blast result :
Comments
ISChja2 is 74% aa similar to ISPfl2.
Found nearby an integron and within a CALIN in Chromohalobacter japonicus CJ.
References
1] Sarah Sonbol (2020) Direct submission.
2] Urmite Genomes (2014) Direct GenBank submission.