ISPrre11

  • Family IS66
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
MT219827.1 ND Providencia rettgeri
Providencia rettgeri RF14-2
DNA section
IS Length : 2457 bp

Ends


IR Length : 19/20

IRL : GTAAGCGTCCGGCGAACACATCTTTTATTTGCTAACTGATCACGCATCAT
IRR : GTAAGCGTCCGGCGATCACAGGTAGGTGTTCTAATTTAAGTGTCCACTTA

Insertion site


Left flankDirect repeatRight flankDR Length
GTTAAAAGAAGCTCATGTTGCACTTGGTGGTG8

DNA sequence

GTAAGCGTCCGGCGAACACATCTTTTATTTGCTAACTGATCACGCATCATAGTGCTCACTGTTGCCAACTGTGAGACTTATGAATGCCAGCTTTAAAACA
CCCCGATGTGCGCCGGGTCTTTTCCCCTGAGTTTAAATGGCAGATTGTCCGAGAATCCAAAGAGCGTATACTGTCCGTTTCTGAATTAGCCCGCAAATAC
GATGTGAACACCAACCAGGTATTTCGCTGGATGCGCGAAGCTGAGGCAGGTCAGGCTTTGTGGGTCAGACGCGCTAAAGGTGAGCCGGATACGCCTGTAG
CTGCTTCAGCTTTTCTACCTGTCAGCGTCCGCCCGGCTAATGCAGCAGCCCCCGTTTTGCCTAAACCTGCCATCACGGTGTCATTTCGAAGTGGCCATCA
GTTGATGTTACACGAGGCAACACCGGCCATGTTAGCGCAACTGGTGGCAGCGTTATCATGATGATGTTATCGCATGATGTGCGTATCTGGCTGTGTGCCG
GTTACACTGATATGCGCAAAGGGTTTGATGGCCTGGCTGCCATGGCGCAGCACGTCCTGCAAAAAGACCCTTTCAGTGGTCATGTGTTTGTCTTTCGCGG
ACGGCGCAGTGACCGGGTGAAATTACTCTGGTGGGATGGTCAGGGCTTGTGTTTATTCTACAAGCGTCTTGAGCAGGGACAGTTCGTCTGGCCTGTCGCA
AAATCCGGTGCTGTGCATTTAACCCAAGCGGAGTTAGCGCTACTGCTTGAAGGCTTAGACTGGCGTCCGCCCGCCAGAAAAAATACGCCAAAAAACACAG
CTTAAATAAAATTAATCAATGAGTTAGCCATCGCTTTGCGCTATAATACGCCGCATGAAAATGATGGCACCTACCTTACCCAATGACCCGAAACAGTTGC
AGGCGATTATCCTGCAGCTGCAGGAAACGCTTGCCCAGCAAGACACGGTTATTGCGTCATTACGCCATCAATTAGCTGTATTAAAGCGCGCCCGTTTTGG
TCGCTCCTCGGAGCATCTGGATAAGCAAATCCATCAACTGGAATTGCAGTTAGAAGAGCTGGAGATGCAGACGGCCGCCTTACCGAAACTTACCGATGGC
GCTGTCGAAGAGAAAGCCACTGCGCGTCGTCGTGTGACCTTACCGGCACAGTTACCACGTGAAGAAAAGCGTGTTGATGCACCTTGCCAGTGTCCGGCAT
GTCAGGGCGAATTAACCCATATCGGTGAGGATGTCTCTGAAATGTTGGATGTCGTACCCGCATCTTATCGGGTTATCCGCATTGTACGCCCTAAGTTCAG
TTGCCAGCACTGCGACACGCTGGTACAAGGTCAGGCTCCGGAGCGGGTGATTAAAAAAGGCCTGGCCAGCGCAGCATTGCTGACACAAGTGATTGTCGAT
AAATACCTCGACCATCAACCACTGTACCGTCAGGCTGAGCGGATGGCGCGGGAAGGCATTGATATCGAGCGCTCGACGCTGGCAGACTGGGTTGGTCAAT
CCGGTGCATTATTAACACCCCTTGCTGAGGCGATTGGACGCCATGTCAAAGCCGGTCAACATATCTTTGCGGATGACACGACCGCGCCAACCTTATCACC
GGGAAAAGGCCGCACACAAACCGGCCGCTACTGGACGTATGTGCGTGATGGTCGTTCCTGGGGCGATACCACACCGCCTGCCGTGTGGCTGCAATACAGC
GAAGATAGAAAAAGTCTGCACCCCACTGCCCATTTAACCGGGTATAAAGGTTCACTGCAGGCTGATGCTTATGCCGGTTACAATGCCTTATACCAAAACC
ACATCACCCAGCATGGTTGTTGGGCCCATGTGCGGCGTAAGTTCTATGACATTACCCAATCCGGCCCGTCCCCCTTGGCAGAAGAGGCCCTGACCATAAT
CCAATCACTATACGTGATTGAGAAACAGGCACGAGGCCAACCACCGGATGAACGACAGCACCTGCGAAGTCTGCAGGCAAAACCTATCCTGGTACAGTTT
AACAACTGGTTACAGACAACCCTGCGCACCTTATCAAAAGGCTCTGCGTTGTCTAAAGCTATCCAGTATGCACTAAAGCAATGGGACGCGTTGGTGGCGT
ACGTGGATAATGGTTATGCTGAGATAGATAACAACAGTGCGGAGCGGTCATTACGGCCCATCGCCCTGGGTCGGAAAAACTACCTGTTTGCCGGCTCTGT
TGGCGGAGGGGAACGTGCCGCTGTGCTGTATTCGATACTTGGCACCGCCAAGCTCAATGGCATCAATCCCAATGCGTACTTAACTGCCGTGTTAAAACGT
ATCGGTAATCATCCGATCAACCGTATTGATGAACTGTTACCCTGGAACATCGACTTATCTGCCCAGCCAGGTGATGCTATCTAAGACACTAAGTGTCCAC
TAAAAATTAAGTGGACACTTAAATTAGAACACCTACCTGTGATCGCCGGACGCTTAC
Protein section
ORF number : 3

 

ORF 1
LengthBeginEndStrandFusion ORF
378 bp125 aa84461+No
ORF function : Accessory Gene
AG : IS66 TnpA

ORF sequence :

MPALKHPDVRRVFSPEFKWQIVRESKERILSVSELARKYDVNTNQVFRWMREAEAGQALWVRRAKGEPDTPVAASAFLPVSVRPANAAAPVLPKPAITVS
FRSGHQLMLHEATPAMLAQLVAALS

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
348 bp115 aa458805+No
ORF function : Accessory Gene
AG : IS66 TnpB

ORF sequence :

MMMLSHDVRIWLCAGYTDMRKGFDGLAAMAQHVLQKDPFSGHVFVFRGRRSDRVKLLWWDGQGLCLFYKRLEQGQFVWPVAKSGAVHLTQAELALLLEGL
DWRPPARKNTPKNTA

 

Blast result :
ORF 3
LengthBeginEndStrandFusion ORF
1521 bp509 aa8642384+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MAPTLPNDPKQLQAIILQLQETLAQQDTVIASLRHQLAVLKRARFGRSSEHLDKQIHQLELQLEELEMQTAALPKLTDGAVEEKATARRRVTLPAQLPRE
EKRVDAPCQCPACQGELTHIGEDVSEMLDVVPASYRVIRIVRPKFSCQHCDTLVQGQAPERVIKKGLASAALLTQVIVDKYLDHQPLYRQAERMAREGID
IERSTLADWVGQSGALLTPLAEAIGRHVKAGQHIFADDTTAPTLSPGKGRTQTGRYWTYVRDGRSWGDTTPPAVWLQYSEDRKSLHPTAHLTGYKGSLQA
DAYAGYNALYQNHITQHGCWAHVRRKFYDITQSGPSPLAEEALTIIQSLYVIEKQARGQPPDERQHLRSLQAKPILVQFNNWLQTTLRTLSKGSALSKAI
QYALKQWDALVAYVDNGYAEIDNNSAERSLRPIALGRKNYLFAGSVGGGERAAVLYSILGTAKLNGINPNAYLTAVLKRIGNHPINRIDELLPWNIDLSA
QPGDAI

 

Blast result :
Comments
ISPrre11 is 79% aa similar (transposase) to ISSpu24.
References
1] Dongsheng Zhou (2020) Direct submission.