ISHgi6

  • Family IS607
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Haloferax gibbonsii
Haloferax gibbonsii
DNA section
IS Length : 2425 bp

Ends


IR Length : 0

IRL : TAGTGCACCTGCTACGTAATTCGACATTTATAAGTAGTGAACAGCAGTAA
IRR : ACCGTTCCTATTTTCGGCAGTAAACAGCAGTCTGCTTAACGAATTGAGAC

Insertion site


Left flankDirect repeatRight flankDR Length
CTTCGCGGGGTCAGGTCGCCCT0

DNA sequence

TAGTGCACCTGCTACGTAATTCGACATTTATAAGTAGTGAACAGCAGTAAACAACAGTAATGACAAAGGTGTACTCCATCGGAGAGTTCGCAGATGAACT
TGGAGTCCACCCAGAAACCGTCAAAAAGTGGTGTCGCGAAGACCAAATTCAATATTCTCGAACTCCCGGTGGGCACCGACGGATTCCACATACCGAACTC
CAACGACTCACAGGCAAACCCTCACGGAGAACCGATAAAGTTGCCATCTACGGGAGAGTCTCAGGTCATGCCCAGAAACAGGACGGCAACCTCGACCGCC
AACTAAACTCTCTCACCCAATACGCCCACGACCACGGGTGGAGTATCGAAAACAAATACTCCGACGTGGGAAGTGGCCTCAACGAGAATCGGCGGGGACT
GAACAAACTCTTGGACGACGCAGAGAACGCCGACTACGGGCGCGTCCTCGTCACGTATCAAGACCGACTCACCCGATTTGGATTCTCCTACATCGAACGC
CTCCTCGACGAATATGGCGTCGAAATCACCGTCATCAACGAGGAAACCGACAAGACTGCACACGAAGAACTCGTGGACGATCTCTTGCAACTCGTCGCCA
GTTTCGCAGGCAAACTCTACGGGGTGCGTTCTTCAAAACGCAAGCGGATCGTCGAATCGGTGGAAGCAGAGGTGGAAACAGATGAGTAGCCACCTCTCAC
TCCCGGTACGACTCCCATTCGATGCGCGAGAGCGCCACGCCCGGTTAGATGTACTCACGAAACTCGTTGCAAATACGCTCATCGAGCGATACTGGACGCC
CGAACATCTCACCGGGATTGACGACTATTCCTATCAAGCGTGGAAATACTTTGACGAAAACGAAGCGTTCGCAGACGTTGACTTGTACCTCCCGAGCCGG
TACAAACGGTGCGTGATGCAGAAAGTCGGAGAAACACTCCGAAGCCACGCCGACAAACAAGAAGCGTTTCAATCCATCCAATCCGTCCTTCCAGACCACA
AGATTCGCCGTATCCACACCCGGAGAATCAAAGAACAACTGTGGGACTCAGAGGAATACATCAAATCTGGGTACGTTGAGCTACTCATCGGCCAACTCAA
CTCGTACTACGACCGTCACGGTCGGTTCCCTGACTCGTATTTCGACATGCAGGACTGCCCCACGTACTCGAAAGGCGTGTTGCCGTACTCCGCAGACGAC
GGGCCAACGAGTGGACAGGCTGTCAAATACGAGTACACCCAAGACACACAGACGCTCACAGTCAAACTCAAAACCCCCGACACACTCGAACCTGAGACTC
GTGGGGATTGGACGTGGACAAAACACGAACTTGAGGGATACGAAGCGTTCCACGAACTCCTCGATCATGGCAGTCTCTCCGCACCCTCCTTCCACCCCAC
ACAGACCAAAACGGGGAGCGACTACCACGAACTCTCGTTCTCAATCGAAGTCGAACACCAAGAGAAATCAGACGACGTGAAAACCGTTTTAGCGATTGAC
GGAGGTCTCCGCAAGGACGCAACTGCTATCGTTGTGAACGAGGATGGCGGGCAACTCTCTGTTCCGTATTTCATCCAGAATACGGAGCGAGAACAGATGC
GGAACCTTGCTCGAGAACGTAATCAACTCAACTCCAAACTCGCGTACCTGCGTCGGAATGGACGCAACCACAGAGACTCGTTCAGACACGTCCAAGCAGA
GTACGAGCGAGTGAACAACAAGATTCGGCACAAGCGAGAGCAGTTAGTTCACGACGTGGCGAATCAAGTCCTCGCACTCGCGTTGGTGTACGATGTGGAC
GCGATTGTTCACGAAGACCTGCGAAGTCTGTCACCACCTCGTGGTGAGGGGCAACTCTCGTGGGAACTCAGTTCGTGGGCACGTCGTGAGATAATTTCGA
AACTCGAGTATCGGGCTGAAATCGCCGGACTGCACGTGGAGAAAGTGTGTCCGGGAAACACGTCTCGGTCGTGCCCCCGATGTGGCGCGACGGGTCACAC
TACGAAGTCTCCCGACCACTCTTTTGAGGTGTGGTGGGGAGGGCACTTCCGCTGTGACAACGCTCGGTGTGGCTTCCAAGCCGACCGAGACTACGTTGGT
GCAGTCAACGTAGCTCGCGTGTTCTTCAGCGAGACGGCAACGCTGGAACACGGTTTCACGTCTTCCTATACGGGGGATGTTGAAATCGTGCCAGCAAGCC
GTTCCGCTGGCCCGCGTCTCGCGTTCGGTGAAGCACCAATTGTGTTTACCGGACAGTCGAAAGTGGTGACTGCTGGTGGCGGGTCGTGCTTCATAGCGCC
CGCTGTCACCCCGACAGAGACGAAAACCAATAGCAGTAACACCAATTCAGTGTCAAGCCCAGCGACACACAGTGCGTCTCAATTCGTTAAGCAGACTGCT
GTTTACTGCCGAAAATAGGAACGGT
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
630 bp209 aa60689+No
ORF function : Transposase
Chemistry : Serine

ORF sequence :

MTKVYSIGEFADELGVHPETVKKWCREDQIQYSRTPGGHRRIPHTELQRLTGKPSRRTDKVAIYGRVSGHAQKQDGNLDRQLNSLTQYAHDHGWSIENKY
SDVGSGLNENRRGLNKLLDDAENADYGRVLVTYQDRLTRFGFSYIERLLDEYGVEITVINEETDKTAHEELVDDLLQLVASFAGKLYGVRSSKRKRIVES
VEAEVETDE

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
1737 bp578 aa6822418+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MSSHLSLPVRLPFDARERHARLDVLTKLVANTLIERYWTPEHLTGIDDYSYQAWKYFDENEAFADVDLYLPSRYKRCVMQKVGETLRSHADKQEAFQSIQ
SVLPDHKIRRIHTRRIKEQLWDSEEYIKSGYVELLIGQLNSYYDRHGRFPDSYFDMQDCPTYSKGVLPYSADDGPTSGQAVKYEYTQDTQTLTVKLKTPD
TLEPETRGDWTWTKHELEGYEAFHELLDHGSLSAPSFHPTQTKTGSDYHELSFSIEVEHQEKSDDVKTVLAIDGGLRKDATAIVVNEDGGQLSVPYFIQN
TEREQMRNLARERNQLNSKLAYLRRNGRNHRDSFRHVQAEYERVNNKIRHKREQLVHDVANQVLALALVYDVDAIVHEDLRSLSPPRGEGQLSWELSSWA
RREIISKLEYRAEIAGLHVEKVCPGNTSRSCPRCGATGHTTKSPDHSFEVWWGGHFRCDNARCGFQADRDYVGAVNVARVFFSETATLEHGFTSSYTGDV
EIVPASRSAGPRLAFGEAPIVFTGQSKVVTAGGGSCFIAPAVTPTETKTNSSNTNSVSSPATHSASQFVKQTAVYCRK

 

Blast result :
Comments
ISHgi6 is 84% aa (transposase) similar to ISNma20.
References
1] Friedhelm Pfeiffer (2020) Direct submission.
2] Tittes, C., Schwarzer, S., Pfeiffer, F., Dyall-Smith, M., Oksanen, H., Quax, T. (in preparation)