ISEsp1

  • Family IS66
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP012999 ND Enterobacter sp.
Enterobacter sp. E20
DNA section
IS Length : 2494 bp

Ends


IR Length : 16/21

IRL : GTAAGCGTCAAGCCACTGCCGCCTGTTGCGATTACTAACGATTGACGATG
IRR : GTAAGCGTTAAGTGAGCGCCGTATTGACGGCTATTTATTGGTGAGATCTA

Insertion site


Left flankDirect repeatRight flankDR Length
CTAAACCGGGGATACTTTGC0

DNA sequence

GTAAGCGTCAAGCCACTGCCGCCTGTTGCGATTACTAACGATTGACGATGATAGAGTCCTCTTATTAACGTTAATGGACTCTATCAATGTCAAACACTCT
TCAGCCCCGCAGGGCGCGGGCGTCCTACTCAATGGACTTTAAGCTGGCTCTCGTCGAAAAGTCATATCAGCCTGGAGCCTGTGTTGCCCGGTTGGCGCGG
GATAATGGAATTAATGACAATCTGCTGTTTACCTGGCGCCAGCGTTACAGACATCTTCTGCCCGATGAAATACAACGGTCAATCAGAGAGCAAGACTCTG
TTATCCCCGTTGTCCTGCCTGATATGGCCCTGTCACACCATGCTGAGCCGCACTATGAACCCGCCGCTCCAGCCTGCCGCGAGGCCATGACATGCGAGGT
GACTGTCGGCGGTGCCAGCCTGCGTCTGTCCGGGGATTTATCACCTGCACTTCTGAAAACGCTGATCCGCGAGCTGACCGGGAGGAGCCGATGATACCCT
TACCGTCAGGCACTCGTATCTGGCTGGTTGCCGGGGTCACCGATATGCGTAAGTCCTTCAATGGTCTGGGCGAACTGGTCCAGCATGTTCTTGATGACAA
TCCGTTCTCCGGCCACCTGTTTATCTTCCGTGGTCGTAAAGGTGACACCGTGAGGATCCTCTGGGCTGATGCTGACGGTCTGTGTCTGTTTACCAAACGT
CTGGAAGAGGGACAGTTCGTCTGGCCTGCTGTACGCGACGGCAAAATCGCCATCACCCGCTCACAACTCGCCATGCTCCTCGATAAGCTGGACTGGCGGC
AACCTAAAACTGCACGCCTTAACTCACTGACGATGTTGTAAAAAGCGCATGACCGCATTATAAATGGGGTCATGAGTCAGGACTATCTCGCCCGTATCGC
TGCGCTGGAAGACGCGCTTCGCCAGAAAGACAGCCAGCTCAGTCTCGTTGCTGAGACTGAGTCGTTCCTGCGTTCGGCGCTGGCCCGCGCAGAAGAGAAA
ATAGAGAACGAAGAGCGTGAAATAGAATATCTGCGGGCTCAGATAGAAAAACTGCGCCGAATGCTGTTCGGTACCCGTTCAGAAAAGCTACGCCGGCAGG
TCGAAGAAGCCGAAGCCCTGCTGAAACAGCAGGAGCAGCAAAGCGATCGTTACAACGGCCGGGACAATGATCAGCAGGTTCCGCGTCAGTTGCGCCAGTC
CCGTCATCGTCGCCCGTTACCGGAACATCTTCCCCGCGAAATAAACAGACTGGAGCCAGCTGAAACCAGCTGTCCTGGTTGCGGTAGTGATATGGCCTAT
CTCAGCGAAGTCAGCGCGGAGCAACTGGAGCTGGTCTCCAGCGCCCTGAAAGTGATCCGCACGGTCAGAGTGAAAAAGGCCTGTACCCGATGCGACTGCG
TCGTTGAAGCGCCAGCGCCCTCACGTCCTATCGACCGGGGCATCGCCGGGCCGGGTCTGCTGGCCCGCGTGTTAACGGCCAAATACTGTGAACACCTGCC
GCTGTATCGCCAGTGCGAAATCTTTGCCCGTCAGGGTGTGGATCTGAGTCGTGCGCTGCTCTCCAACTGGGTGGATGCGTGCTGCCGGTTAATGGCCCCG
CTGGATGAAGCCCTCTACCACTACGTGATGGACTGCCGCAAACTGCATACGGATGACACTCCGGTGCCCGTGCTGGCGCCGGGCAGAAAGAAGACGAAAA
CCGGGCGTATCTGGACATATGTCCGTGATAACAGAAGCGCGGGTTCATCAGATCCGCCAGCGGCATGGTTCGCCTTCTCACCGGACCGACAGGGGAAACA
CCCTCAGCAACATCTTCGGCACTATCATGGCGTGCTGCAGGCAGATGCCTTCGCAGGGTACGACAGGTTGTTCAGCGCAGAGCGTGAAGGTGGCCCGTTG
ACAGAAGCGGCATGCTGGGCTCATGCGCGGCGCAAAATCCATGACGTCTATATCAGCACCCGGACGGCCACAGCAGAGGAGGCTCTGAAGCGCATCAGTG
AGTTATACGCGATAGAAGAGGAAATACGCGGCCTTCCGGCATCTCAGCGGCTGGCCGCCAGACGGTCCCGAAGTAAACCGTTGCTGATATCCCTGCATGA
CTGGTTGGTGGAGAAAAGAGCCACTCTGTCGAAAAAATCCCGGTTAGGCGAGGCGTTCGCTTATGCACTGAACCAGTGGGATGCCCTGTGTTACTACTGC
GATGATGGTCTGGCAGAGCCGGATAATAACGCTGCTGAGCGCGCGCTACGAGCGGTCTGTCTGGGCAAGAAAAACTACATCTTCTTCGGCAGTGATCATG
GTGGTGAACGTGGTGCCCTGCTGTATGGTCTGATCGGAACGTGCAGGCTGAACGGTATCGATCCAGAGGGTTACCTTCGCCATATCCTGAGCGTATTGCC
GGAGTGGCCCATCAACAAAGTGGCCGAACTGCTGCCATGGAACGTAGATCTCACCAATAAATAGCCGTCAATACGGCGCTCACTTAACGCTTAC
Protein section
ORF number : 3

 

ORF 1
LengthBeginEndStrandFusion ORF
408 bp135 aa87494+No
ORF function : Accessory Gene
AG : IS66 TnpA

ORF sequence :

MSNTLQPRRARASYSMDFKLALVEKSYQPGACVARLARDNGINDNLLFTWRQRYRHLLPDEIQRSIREQDSVIPVVLPDMALSHHAEPHYEPAAPACREA
MTCEVTVGGASLRLSGDLSPALLKTLIRELTGRSR

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
351 bp116 aa491841+No
ORF function : Accessory Gene
AG : IS66 TnpB

ORF sequence :

MIPLPSGTRIWLVAGVTDMRKSFNGLGELVQHVLDDNPFSGHLFIFRGRKGDTVRILWADADGLCLFTKRLEEGQFVWPAVRDGKIAITRSQLAMLLDKL
DWRQPKTARLNSLTML

 

Blast result :
ORF 3
LengthBeginEndStrandFusion ORF
1593 bp530 aa8722464+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSQDYLARIAALEDALRQKDSQLSLVAETESFLRSALARAEEKIENEEREIEYLRAQIEKLRRMLFGTRSEKLRRQVEEAEALLKQQEQQSDRYNGRDND
QQVPRQLRQSRHRRPLPEHLPREINRLEPAETSCPGCGSDMAYLSEVSAEQLELVSSALKVIRTVRVKKACTRCDCVVEAPAPSRPIDRGIAGPGLLARV
LTAKYCEHLPLYRQCEIFARQGVDLSRALLSNWVDACCRLMAPLDEALYHYVMDCRKLHTDDTPVPVLAPGRKKTKTGRIWTYVRDNRSAGSSDPPAAWF
AFSPDRQGKHPQQHLRHYHGVLQADAFAGYDRLFSAEREGGPLTEAACWAHARRKIHDVYISTRTATAEEALKRISELYAIEEEIRGLPASQRLAARRSR
SKPLLISLHDWLVEKRATLSKKSRLGEAFAYALNQWDALCYYCDDGLAEPDNNAAERALRAVCLGKKNYIFFGSDHGGERGALLYGLIGTCRLNGIDPEG
YLRHILSVLPEWPINKVAELLPWNVDLTNK

 

Blast result :
Comments
ISEsp1 is 96% aa (transposase) similar to ISEcl6.
References
1] Dongsheng Zhou (2020) Direct submission.
2] Liu,Y., Cao,G., Chen,R., Ren,Z., Du,J., Xiang,C., Song,L., Wang,J., Liu,G. and Wang,G. (2019) Direct GenBank submission.