ISRor5

  • Family IS5
  • Group IS5
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Raoultella ornithinolytica
Raoultella ornithinolytica
Citrobacter freundii 18-1 plasmid pBKPC18-1
DNA section
IS Length : 1150 bp

Ends


IR Length : 15/16

IRL : GGCAATGCTGATCAAGGTCCACCGTTGTCGCTTCTCAAACGTTATCCGCA
IRR : GGCAATGCTGAACAAGTAACGTCATATCCATCGCACAGCCATTTGAATGC

Insertion site


Left flankDirect repeatRight flankDR Length
TCGGCAGCAGTTAAATCCATCGGT4

DNA sequence

GGCAATGCTGATCAAGGTCCACCGTTGTCGCTTCTCAAACGTTATCCGCAGATGAAGCAGCAGACCCTGGCAATGGCCGCAGATCAAAACAACGGATTCG
AGCAGTCGCGCAAGCCCACCCGACGTGAAGAGTTCTTGCGGACCATGGAGACAATAGTGCCTTGGGCCGCCCTGTGCCAGGTGATAGAGCCGCACTACCC
CAAGGCCGGCAACGGCCGCCCGCCCATTGGCCTAGAGCGCATGCTGCGCATCCATTTCCTGCAGCACTGGTTCAACCTGGCCGATCTGGCGTGCGAGGAG
GCTCTGTATGACAGTGCCAGTCTGCGCCGCTTTGCGGGCATTGACCTGGGTCGTGAACGGGTGCCCGATGCCACCACGCTGCTGAAGTTTCGCAAACTGC
TCCATGAGCACAAACTGGGCGAAGCCCTGTTTGCCAAGGTAGGCCAGCAATTGCAGGAGCGCGGCTTGAAGGTCAATACCGGCACCATCGTGGATGCCAC
CATCATCGCCGCGCCCAGTTCTACCAAGAACGCCGACAAGGCGCGCGACCCCGACATGCACCAGACCCGCAAAGGCCAGCAATGGTATTTCGGCATGAAG
CTGCACATTGGGGTGGACAGCCAAAGCGGGCTGGCGCACAGCGCCGTGGTGACGGCGGCCAACGTGCACGACAAACACCCACTGCCCGATCTGCTGCATG
GCAATGAGCGACGCGTGTACGGCGACTCGGCCTATGCCAGCCAGAAAACACTGATAGCGAGCAAAGCCCCCAGGGCCAAGGACTTCACCAACCAGCGCAC
CCGCCGTGCGGGCGAGGTGGACGAAGTTCAGCGGGCCAAGAACCGCAACAAGTCACGGGTGCGCGCTCGGGTCGAGCATGTCTTTGCGGTGGTAAAGCGC
CTGTGGGGATTCACCAAGGTGCGCTATCGCGGGCTGCAAAAGAACGCCACGCGTGCGTTCACGGCCTTGGCGCTGGCCAACATCTACCTTGCCCGAGGGC
GCCTGCAGGGACAGGTGCGCCCGTAAGGGTCCGAAAGGGGCTCAAAGGCTCCCGAAACAGGCCCTGTGGGGCAAAGCACAGTATCTTTGCGGGCCATTTG
GCATTCAAATGGCTGTGCGATGGATATGACGTTACTTGTTCAGCATTGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
975 bp324 aa521026+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MKQQTLAMAADQNNGFEQSRKPTRREEFLRTMETIVPWAALCQVIEPHYPKAGNGRPPIGLERMLRIHFLQHWFNLADLACEEALYDSASLRRFAGIDLG
RERVPDATTLLKFRKLLHEHKLGEALFAKVGQQLQERGLKVNTGTIVDATIIAAPSSTKNADKARDPDMHQTRKGQQWYFGMKLHIGVDSQSGLAHSAVV
TAANVHDKHPLPDLLHGNERRVYGDSAYASQKTLIASKAPRAKDFTNQRTRRAGEVDEVQRAKNRNKSRVRARVEHVFAVVKRLWGFTKVRYRGLQKNAT
RAFTALALANIYLARGRLQGQVRP

 

Blast result :
Comments
ISRor5 is 89% aa similar to IS881.
References
1] Ting Yu (2020) Direct submission.
2] Zheng,B. (2017) Direct GenBank submission.