ISEfa17

  • Family ISL3
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP019993 ND Enterococcus faecium
Enterococcus faecium
Enterococcus faecium 2014-VREF-268 plasmid p268-1
DNA section
IS Length : 1493 bp

Ends


IR Length : 20/27

IRL : GGCTCTATAATTTCTAGGACTGATAGAAAATCATTCTATCGGTCCCTTTT
IRR : GGCTCTTTGTCAAATAGGACTGATAGAGTGAGATAAGAACATCTAAGGTA

Insertion site


Left flankDirect repeatRight flankDR Length
ACCTAATATTACGGTGAGGAATTG/TTTTTCTACCGACATAAACAA7

DNA sequence

GGCTCTATAATTTCTAGGACTGATAGAAAATCATTCTATCGGTCCCTTTTGAGCATGAAAAAACAAAACATACAGAAGCTCCGTTAGAATTGAATCACCA
CAACACAATCAAAGGAGCGTTCTGTATGCCTGATCTTCATCATATCAAACTACTACTTGGAATCAAAGATAAAAACATTTTCATCACAAATGTGGAATCG
AAGAGCATTAAGAATATCAAGAGTCTTGTTGTTTCTGCGACGTTAAGTAAAGAAATTCGTCGCTGTCCTTTGTGTAAACAGATGAATCATGAAGGCATGA
TCGTTAAGAACGGAAAGAAAAAATCGCTCATTCAACTTAATAAATGTGCGAACCAACTGACTTATCTTGCTTTAGCGAAACAACGCTACCACTGTCGTGG
CTGCCACACCTATTTTACGGCGAATACCTACATTGTCGATAGAAACTGCTTTATCGCTAAACAAGTGCGCTATAAAATTTTAGAAGAGCTAACTGAAAAA
CAAGCAATGACGACAATTGCTAAGCATTGCGGCGTTTCTTGGTCGACCGTTTCTCGGACACTCGCTTCTCTGATCCCCATGACAAAAGTAAAAAGAAATT
GGTTACCGCGTTGTTTATTAATGGATGAATTTCGTTCACTGAAAAATCAAGTCGGTCCCTACTCCTTTTCTTGTATGGATGGCGATACTGGAAAATTACT
GGATATTCTTCCTTCACGGAAGAAAAAGGCTCTCGTTTCTTATTTTATGCAATTTGAACGACGCGCACGATTGAAGGTAAAGGTCATCGTGACGGACATG
AATGTTTCTTATGCCTCTCTGATAAAGGAATGTTTTCCAAAGGCAAAACTCGTTGTGGATCGTTTTCACATTGTCAAACATCTCATTCGTAAATTTGAGG
ATATTCGCGTACGAATCATGAAAAGCTTTGATCGAAACGATCCAACACAAGCCAAATATTATCGACAATTAAAGGCGTTGTCTCGGCTTCTGATCAAACG
ACAGGACAAGCTTGTTTATGACAAATGGACCAAATGGCGCAATTTTGGTTGGGCGTATCTCACCGAAAGTGAAGTGGTGGATCGTCTGCTTTCGATCTCT
GACGAATTACGAATCGCCTATTTTTACTATCAAGAAATTCTTCAAGCGTTTCACGACAAAGAGGCGGACACTTTCTTTAAACTTGTAAGAACGATGCCCA
ATTCCGTTCCAAAAGAACTGCATTCTATAAAAAAAGCTTTTATAAACTATGAATCCGGCATTCGTTTAGCCCTCGAATTGCCTTATTCAAATGCCAAAAT
AGAAAATCTGCATACCCACATCAAAGCATTGAAACGAGTCGCTTATGGCTTTCGAAGCTTTCGGAAAATGAAGACCAGAATTTTCTTACTAAATAATCTG
ATTACCTATGAATCAAAAAACATCTAAAGTAGAAAAGGAATTCTACCTTAGATGTTCTTATCTCACTCTATCAGTCCTATTTGACAAAGAGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1302 bp433 aa1261427+No
ORF function : Transposase
Chemistry : Unknow

ORF sequence :

MPDLHHIKLLLGIKDKNIFITNVESKSIKNIKSLVVSATLSKEIRRCPLCKQMNHEGMIVKNGKKKSLIQLNKCANQLTYLALAKQRYHCRGCHTYFTAN
TYIVDRNCFIAKQVRYKILEELTEKQAMTTIAKHCGVSWSTVSRTLASLIPMTKVKRNWLPRCLLMDEFRSLKNQVGPYSFSCMDGDTGKLLDILPSRKK
KALVSYFMQFERRARLKVKVIVTDMNVSYASLIKECFPKAKLVVDRFHIVKHLIRKFEDIRVRIMKSFDRNDPTQAKYYRQLKALSRLLIKRQDKLVYDK
WTKWRNFGWAYLTESEVVDRLLSISDELRIAYFYYQEILQAFHDKEADTFFKLVRTMPNSVPKELHSIKKAFINYESGIRLALELPYSNAKIENLHTHIK
ALKRVAYGFRSFRKMKTRIFLLNNLITYESKNI

 

Blast result :
Comments
ISEfa17 is 60% aa similar to ISEfa11.
References
1] Moutusee ISlam (2020) Direct submission.
2] Kim,H.M. (2017) Direct GenBank submission.